mRNA_8568 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350127
Unique NamemRNA_8568
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350127 vs. uniprot
Match: A0A836CC91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC91_9STRA)

HSP 1 Score: 412 bits (1059), Expect = 1.660e-145
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1 
Query:    1 MRCRTASLLLLLGAVLLVNAKIFKTDVPSNLADEINDVALAKLASSHSCMAPHRFAVQGMRCQRAIEKVRHEATTSPRLIPCLAERLEIDLITGCSAYVTADYRPERGRKRKHKGAGKDDKPKHDHHRRHSCEKAYFTFHTKDMDCEEAKTRVEKVISKSSHKSQCMANASVEVLQGCDAPRTKDYRVSRVVLLCDTATNTVCADATNG 627
            MRCRTASLLLLLGAVLLVNAKIFKTDVPSNLADEINDVALAKLASSHSCMAPHRFAVQGMRCQRAIEKVRHEATTSPRLIPCLAERLEIDLITGCSAYVTADYRPERGRKRKHKGAGKDDKPKHDHHRRHSCEKAYFTFHTKDMDCEEAKTRVEKVISKSSHKSQCMANASVEVLQGCDAPRTKDYRVSRVVLLCDTATNTVCADATNG
Sbjct:    1 MRCRTASLLLLLGAVLLVNAKIFKTDVPSNLADEINDVALAKLASSHSCMAPHRFAVQGMRCQRAIEKVRHEATTSPRLIPCLAERLEIDLITGCSAYVTADYRPERGRKRKHKGAGKDDKPKHDHHRRHSCEKAYFTFHTKDMDCEEAKTRVEKVISKSSHKSQCMANASVEVLQGCDAPRTKDYRVSRVVLLCDTATNTVCADATNG 209
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350127 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CC91_9STRA1.660e-145100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_57contigContig_57:111938..113743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350127|estExt_Genemark1.C_Ctg_570019
Hectar predicted targeting categorysignal peptide
TranscriptId350449
TrackFilteredModels1
ProteinId350127
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350127gene_8568Tribonema minus UTEX_B_3156 geneContig_57 111938..113743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350127Trimin1|350127|estExt_Genemark1.C_Ctg_570019Tribonema minus UTEX_B_3156 polypeptideContig_57 111938..113743 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8568_2exon_8568_2Tribonema minus UTEX_B_3156 exonContig_57 111938..112246 -
exon_8568_1exon_8568_1Tribonema minus UTEX_B_3156 exonContig_57 113423..113743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8568CDS_8568Tribonema minus UTEX_B_3156 CDSContig_57 113423..113743 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8568 ID=mRNA_8568|Name=jgi.p|Trimin1|350127|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=630bp|location=Sequence derived from alignment at Contig_57:111938..113743- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTGCAGAACGGCGTCGCTGCTGCTGCTCTTGGGTGCGGTCCTGCT
CGTCAACGCGAAGATTTTCAAAACTGATGTGCCCTCCAACCTAGCCGACG
AGATCAACGATGTTGCGCTGGCGAAGTTGGCTTCAAGCCATAGCTGCATG
GCGCCGCATCGATTCGCCGTACAGGGCATGCGATGTCAAAGGGCGATCGA
GAAGGTCCGGCACGAAGCGACCACGAGTCCCAGGTTGATACCGTGCCTAG
CTGAGCGCCTTGAGATCGATCTGATAACTGGCTGCTCCGCCTACGTGACC
GCCGACTACCGGCCCGAGCGAGGGCGCAAGAGGAAGCACAAGGGTGCAGG
CAAGGATGACAAGCCTAAGCACGACCACCACCGAAGACACTCGTGCGAGA
AAGCTTACTTCACCTTCCACACCAAAGATATGGACTGCGAGGAAGCTAAG
ACGCGGGTGGAGAAGGTGATCAGCAAGTCCAGCCATAAGAGCCAGTGCAT
GGCGAATGCCAGCGTCGAGGTGCTGCAGGGCTGCGACGCCCCCAGGACGA
AGGACTATAGGGTCTCGCGGGTGGTGCTGCTGTGTGATACAGCCACCAAC
ACTGTGTGTGCTGACGCCACCAACGGGTAA
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protein sequence of jgi.p|Trimin1|350127

>Trimin1|350127|estExt_Genemark1.C_Ctg_570019 ID=Trimin1|350127|estExt_Genemark1.C_Ctg_570019|Name=jgi.p|Trimin1|350127|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=210bp
MRCRTASLLLLLGAVLLVNAKIFKTDVPSNLADEINDVALAKLASSHSCM
APHRFAVQGMRCQRAIEKVRHEATTSPRLIPCLAERLEIDLITGCSAYVT
ADYRPERGRKRKHKGAGKDDKPKHDHHRRHSCEKAYFTFHTKDMDCEEAK
TRVEKVISKSSHKSQCMANASVEVLQGCDAPRTKDYRVSRVVLLCDTATN
TVCADATNG*
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mRNA from alignment at Contig_57:111938..113743-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8568 ID=mRNA_8568|Name=jgi.p|Trimin1|350127|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1806bp|location=Sequence derived from alignment at Contig_57:111938..113743- (Tribonema minus UTEX_B_3156 )
ATGAGGTGCAGAACGGCGTCGCTGCTGCTGCTCTTGGGTGCGGTCCTGCT
CGTCAACGCGAAGATTTTCAAAACTGATGTGCCCTCCAACCTAGCCGACG
AGATCAACGATGTTGCGCTGGCGAAGTTGGCTTCAAGCCATAGCTGCATG
GCGCCGCATCGATTCGCCGTACAGGGCATGCGATGTCAAAGGGCGATCGA
GAAGGTCCGGCACGAAGCGACCACGAGTCCCAGGTTGATACCGTGCCTAG
CTGAGCGCCTTGAGATCGATCTGATAACTGGCTGCTCCGCCTACGTGACC
GCCGACTACCGGCCCGAGCGAGTAAGGATCTTCTGTAACCCAGCCACGGA
CACCGTCTGCCGAGATGCTGTGACCGGCTAGGGGACGGTGCTCGACGCTC
CATCTTCACCATGGACTATATAAGAGGAGCCCCCATCAGAGCAGCAACAG
AGCAAAGTGATGTGTGGTTTACTGAGACAGGCAGGGACGGAAGCAGAAGC
CAGGCAAGACTGATTTTACTCAAGCCCATGCAGCAAACCTCATGCAAGTA
GTGTGCATCACTACCACCATACCACCAGCATCCGTCAGCACAAGGGAATG
TCAAGTTTCATGGACCGGGCACCTACACTGCGAGGAAACTCGTCATGACT
GAACAAAATCTCGTTGTGCAGCGGATGCGTACAGGGAATATCTCCTCACA
ATAATCAGAGGTCATCAGGATGAAATGACTCCATCGTCCAGATGATGCCA
GTGGTCATGCATGAATGCACGCACGCATGCCTTCACGCAAGAAGACGTCA
GGACTCTGGAAACATTGCTCATGTCCTTGCGGCCGCTGACAGCTGCACAG
TAAATGAAGCACACGGCCCTTGCACTGCAACGCCAACGTCGCCTGCTCTC
CCATACTCTTGTTGTACTGGATGCTTTTGTTGTTGGTCTGCAGACACAAG
CTTTGTCTTGCACAGCCGTGTTTCAGCAGTGTCATCGCGGTGCCATAGAT
TCATGATGATGTGTCTTGCAGCTCATTGCATGTACACCAACGTTATTGCA
CAACAGTGTGAAGGAGCCGTGCGTTGAGCTTGGCGCCTCATACGACTGAC
TGTTGAGCCTCAATGAGGGGATGCTGTTTAATTTGTTCAAGTGCCCTGCT
CTGCTTGTGAAAATGGACATGGACAGAGCCAGTTCAAAACACGGACTTTG
AAAAAGGAACCACACCTGCAACTGATTTCCTCAGGTTCTGAGCTACTTCA
ACCCTCACTAAGTCAGGCCGACCCTATACCAGTTTCATAGGCGCAGTTTG
CTCGGCCGCTCGAATAGAAGCTGCAAGGGAGAGGTCGTCCACTGCCCGGC
GAGACAAACACATCAACGCTATCAAATCACCTACGGGGGCAGGTGCAAGC
CATGGTCAAATACAACAGCTGTATCTTGTTAATCTTGGCTGTCTTGGGCG
TCCTAAGCATCACGGCGGGGGCAAATAACGCCATACCTTACATAAAGGGG
CGCAAGAGGAAGCACAAGGGTGCAGGCAAGGATGACAAGCCTAAGCACGA
CCACCACCGAAGACACTCGTGCGAGAAAGCTTACTTCACCTTCCACACCA
AAGATATGGACTGCGAGGAAGCTAAGACGCGGGTGGAGAAGGTGATCAGC
AAGTCCAGCCATAAGAGCCAGTGCATGGCGAATGCCAGCGTCGAGGTGCT
GCAGGGCTGCGACGCCCCCAGGACGAAGGACTATAGGGTCTCGCGGGTGG
TGCTGCTGTGTGATACAGCCACCAACACTGTGTGTGCTGACGCCACCAAC
GGGTAA
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Coding sequence (CDS) from alignment at Contig_57:111938..113743-

>mRNA_8568 ID=mRNA_8568|Name=jgi.p|Trimin1|350127|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=630bp|location=Sequence derived from alignment at Contig_57:111938..113743- (Tribonema minus UTEX_B_3156 )
ATGAGGTGCAGAACGGCGTCGCTGCTGCTGCTCTTGGGTGCGGTCCTGCT
CGTCAACGCGAAGATTTTCAAAACTGATGTGCCCTCCAACCTAGCCGACG
AGATCAACGATGTTGCGCTGGCGAAGTTGGCTTCAAGCCATAGCTGCATG
GCGCCGCATCGATTCGCCGTACAGGGCATGCGATGTCAAAGGGCGATCGA
GAAGGTCCGGCACGAAGCGACCACGAGTCCCAGGTTGATACCGTGCCTAG
CTGAGCGCCTTGAGATCGATCTGATAACTGGCTGCTCCGCCTACGTGACC
GCCGACTACCGGCCCGAGCGAGGGCGCAAGAGGAAGCACAAGGGTGCAGG
CAAGGATGACAAGCCTAAGCACGACCACCACCGAAGACACTCGTGCGAGA
AAGCTTACTTCACCTTCCACACCAAAGATATGGACTGCGAGGAAGCTAAG
ACGCGGGTGGAGAAGGTGATCAGCAAGTCCAGCCATAAGAGCCAGTGCAT
GGCGAATGCCAGCGTCGAGGTGCTGCAGGGCTGCGACGCCCCCAGGACGA
AGGACTATAGGGTCTCGCGGGTGGTGCTGCTGTGTGATACAGCCACCAAC
ACTGTGTGTGCTGACGCCACCAACGGGTAA
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