mRNA_8514 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|84894
Unique NamemRNA_8514
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|84894 vs. uniprot
Match: A0A835YNC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC2_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.350e-47
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 2 
Query:  140 MLEASAPTLLLHLISSLTQGLALRRRDLAAAVLPRPHSRHTVRGGHGVRGVLHPRSRRGARRREHRGRRRVHARHRAASADAGGL 394
            MLEASAPTLLLHLISSLTQGLALRRRDLAAAVLPRPHSRHTVRGGHGVRGVLHPRSRRGARRREHRGRRRVHARHRAASADAGGL
Sbjct:    1 MLEASAPTLLLHLISSLTQGLALRRRDLAAAVLPRPHSRHTVRGGHGVRGVLHPRSRRGARRREHRGRRRVHARHRAASADAGGL 85
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|84894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNC2_9STRA1.350e-47100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_68contigContig_68:480746..481905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|84894|CE84893_17
Hectar predicted targeting categorysignal peptide
TranscriptId85216
TrackFilteredModels1
ProteinId84894
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|84894gene_8514Tribonema minus UTEX_B_3156 geneContig_68 480746..481905 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8514_1exon_8514_1Tribonema minus UTEX_B_3156 exonContig_68 480746..480941 +
exon_8514_2exon_8514_2Tribonema minus UTEX_B_3156 exonContig_68 481673..481905 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8514UTR5_8514Tribonema minus UTEX_B_3156 five_prime_UTRContig_68 480746..480884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8514CDS_8514Tribonema minus UTEX_B_3156 CDSContig_68 480885..480941 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8514UTR3_8514Tribonema minus UTEX_B_3156 three_prime_UTRContig_68 481874..481905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|84894Trimin1|84894|CE84893_17Tribonema minus UTEX_B_3156 polypeptideContig_68 480885..481873 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8514 ID=mRNA_8514|Name=jgi.p|Trimin1|84894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=429bp|location=Sequence derived from alignment at Contig_68:480746..481905+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGACAACCTTCATGCAGCAGATGTCCTGCGCAATGCGCTGGGGGTGTTTG
GCATCACGCAAAACGCTCGGAGCAGGCTTGTACTTGCGCTCGCTGACAAC
ACGACGGTGATTGCGACCGATGGTGAACTGCGGAGGCTGATGCTCGAGGC
CAGTGCGCCAACGCTGCTGCTGCATCTCATCTCATCACTGACCCAGGGTC
TGGCGCTTCGAAGACGTGACCTGGCCGCAGCAGTTCTTCCACGCCCTCAC
AGTCGTCATACTGTGCGCGGTGGACACGGGGTGCGCGGCGTTCTTCATCC
TCGCAGCCGGCGCGGGGCACGACGCCGCGAGCATCGCGGTCGGCGCCGTG
TTCATGCTCGCCATCGTGCTGCTTCAGCTGACGCAGGTGGATTATAGCGT
CCTCGCCGTAGCGTCCTTCGTCACCTCCG
back to top

protein sequence of jgi.p|Trimin1|84894

>Trimin1|84894|CE84893_17 ID=Trimin1|84894|CE84893_17|Name=jgi.p|Trimin1|84894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
MLEASAPTLLLHLISSLTQGLALRRRDLAAAVLPRPHSRHTVRGGHGVRG
VLHPRSRRGARRREHRGRRRVHARHRAASADAGGL*
back to top

mRNA from alignment at Contig_68:480746..481905+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8514 ID=mRNA_8514|Name=jgi.p|Trimin1|84894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1160bp|location=Sequence derived from alignment at Contig_68:480746..481905+ (Tribonema minus UTEX_B_3156 )
CGACAACCTTCATGCAGCAGATGTCCTGCGCAATGCGCTGGGGGTGTTTG
GCATCACGCAAAACGCTCGGAGCAGGCTTGTACTTGCGCTCGCTGACAAC
ACGACGGTGATTGCGACCGATGGTGAACTGCGGAGGCTGATGCTCGAGGC
CAGTGCGCCAACGCTGCTGCTGCATCTCATCTCATCACTGACCCAGGTGC
GGTGTGTGTTCTTGCGTACATACTTCTATATGTACGTAGTGCACTGTAGT
GCTCGCTTGTGGCCGCCCATAGGCAATGGCCGCTTTGCTTGCCGTGCCTG
GGCAGTGTGCCTGTGTGTTGCCACCCACTGATCCACCCTAAAAGGCTGTA
TGAGGCTTGAAATATGTGTACATGCTGCAAGGGCCGCCTCGGTGAGCGCA
GTCTAAAGCCACTTGACTAGCTTGCATACTCTTCAGAGGCCTGAGATAGA
ATGACTGAAATGCACAGCTTTCTGAAGCAACAGTTGAGCTCAGTGTTAAT
GGCCGTGCAGATGTGTGCCGGCCGCGGCGGCTGTTTAGTGATCAGCAGTA
TGTTCCTTACCTGCTTCTACCGCTGGCACGTATTCTCTGCTGGCGCAGCT
GACCCGGCCAAACCCAACTCCATTTCGTTTACCCAATCGCTGAGCATTGC
TGTTCACAGATGCTCCCAAATACAGCTACTCAGCCGACGATCTGCAGAGA
ATTGCAGAGGCCTACCTGGTCGCCGGGATGCTGATAGCCACGCTGGGGTT
CACAGCACTCACGACCAGCCCCCCCAGCCTCGCGGCCGACGGTGCTGCAC
CACCAGTCGCGGCGTCGCCCCCTCAGATGCCGGAGATGGTGGCCTACCTC
CTGTGCGCACAGCTGTCCTTCTACTTCTCCGTGGTCACCATTGTCGGGTC
GCTGTACCTGGTACGCGTGTTCAACAGGGTCTGGCGCTTCGAAGACGTGA
CCTGGCCGCAGCAGTTCTTCCACGCCCTCACAGTCGTCATACTGTGCGCG
GTGGACACGGGGTGCGCGGCGTTCTTCATCCTCGCAGCCGGCGCGGGGCA
CGACGCCGCGAGCATCGCGGTCGGCGCCGTGTTCATGCTCGCCATCGTGC
TGCTTCAGCTGACGCAGGTGGATTATAGCGTCCTCGCCGTAGCGTCCTTC
GTCACCTCCG
back to top

Coding sequence (CDS) from alignment at Contig_68:480746..481905+

>mRNA_8514 ID=mRNA_8514|Name=jgi.p|Trimin1|84894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_68:480746..481905+ (Tribonema minus UTEX_B_3156 )
ATGCTCGAGGCCAGTGCGCCAACGCTGCTGCTGCATCTCATCTCATCACT
GACCCAGGGTCTGGCGCTTCGAAGACGTGACCTGGCCGCAGCAGTTCTTC
CACGCCCTCACAGTCGTCATACTGTGCGCGGTGGACACGGGGTGCGCGGC
GTTCTTCATCCTCGCAGCCGGCGCGGGGCACGACGCCGCGAGCATCGCGG
TCGGCGCCGTGTTCATGCTCGCCATCGTGCTGCTTCAGCTGACGCAGGTG
GATTATAG
back to top