mRNA_8479 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A836C9J5_9STRA (HSP20-like chaperone n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J5_9STRA) HSP 1 Score: 308 bits (790), Expect = 7.080e-105 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1
Query: 64 MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALTAFPLGGSMNIHRGIGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALTAFPLGGSMNIHRGIGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK
Sbjct: 1 MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALTAFPLGGSMNIHRGIGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 158
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A835ZC62_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC62_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 8.490e-22 Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 82 PQDRFRTGFDRLLQDFENDFLFPTAALTAFPLGGSMNIHRGIGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKD 474
P FR GFDRL QD EN + T GG + GG+L D+ +T+ F++ D+PG+ K++IN+ VD+++N++T++ ERK E E GWL+RER G+ RT LP+TADL KA E KD
Sbjct: 9 PLGMFRGGFDRLFQDLENSMM---GGGTTPMRGGGARANVYGGGMLLCDMCETDNEFKVCCDVPGLPKDQINVAVDDTHNTMTLSCERKPAAAMEKEEGWLMRERPCGRFSRTLALPETADLEKASAEFKD 136
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A836CLK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.900e-20 Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 1
Query: 61 IMSLSHRPQDRFRTGFDRLLQDFENDFLFPTAAL-----TAFPLG-GSMNIHRG-----------IGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETE-----GGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
+M + P RFR FDR+ +D D P + T P+ G++ RG +G +L D++D + +E++VD PGVSKE+INI+VD+S+N+IT+ R +E ++E E G +L RE GK R LP AD++KA+V +GTL TVPK + L IK
Sbjct: 499 MMDPTVEPLSRFRNDFDRMWEDMTADMFGPEMGMGEEWGTQVPVSTGAVAPGRGRRRMRMPGARRLGKVLNMDIRDVDNRYEVRVDCPGVSKEDINISVDDSDNTITVEAMRPQEHEKEGEEKGKQGSYLTREIPHGKMHRICPLPADADVNKAEVTFNNGTLRMTVPKSGAAAGKRLDIK 679
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A835YUR0_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUR0_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 5.550e-20 Identity = 43/108 (39.81%), Postives = 73/108 (67.59%), Query Frame = 1
Query: 214 LLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
+L D+++T+T ++M+ D+PGV+K++I ++VDE+ + T++TE++ EK++ GW RER+ G+A RT LP +D +K V ++G LH PK E P R L+I+
Sbjct: 58 MLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 165
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A0C1YKJ8_9BURK (Stress protein n=2 Tax=Noviherbaspirillum TaxID=1344552 RepID=A0A0C1YKJ8_9BURK) HSP 1 Score: 82.0 bits (201), Expect = 4.670e-16 Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 217 LRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
+R D+ +TE A+ +K D+PGV K++I I+++ N+++I E KEEK+E+ EG + ER FG+ R+ LPQ D SKAQ + +DG L T+PK+ S+ ++I+
Sbjct: 44 IRMDVAETEQAYMVKADIPGVKKDDIKISIE--GNTVSIRAETKEEKQEKMEGNMMRSERYFGEQYRSFTLPQEVDESKAQAKYQDGVLSLTLPKKAGATSKQITIQ 148
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A6I1HCZ3_9BURK (Hsp20 family protein n=3 Tax=unclassified Janthinobacterium TaxID=2610881 RepID=A0A6I1HCZ3_9BURK) HSP 1 Score: 80.1 bits (196), Expect = 2.510e-15 Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 214 LLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
L+R D+ +TE A+ +K ++PGV KE+I + +D N ++ITTE K+E+++E G + ER +G+ R+ LPQ D SKA+ DG L T+PK+ G RTL I+
Sbjct: 44 LIRVDMSETEQAYMLKAEVPGVQKEDIKVAID--GNQVSITTEVKKEERQEN-GNMVRNERYYGQQYRSFSLPQEVDESKAEARCHDGILELTLPKKPGGGGRTLHIQ 148
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A835Z9D8_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D8_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.730e-15 Identity = 60/167 (35.93%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 97 RTGFDRLLQDFENDFL---FPTAALTAFPLGG-------SMNIHRGIGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEG--------GWLVRERTFGKAQRTQVLPQTADLSKAQ-VELKDGTLHFTVPKRE-VPGSRTLSIK 537
R GFD L + FE DF P ++ PL G SM + + D++ T+ A+ + V++PG+ K+++ I VD+ N++T+T EEK +T G+L+RER++G+ R+ LP AD+ K Q ELKDG LH VPK+E +R L IK
Sbjct: 107 RRGFDDLFRSFEQDFFGSPSPFPSVFGSPLAGFTPSTILSMPAPPALPAM-SMDVRATDGAYNISVELPGLDKKDLRIEVDDERNALTLTATH-EEKPADTSXXXXXXXXPGYLLRERSYGRVTRSVFLPDDADMKKIQEAELKDGVLHVMVPKKEEAQTTRPLEIK 271
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: A0A257N4D8_9GAMM (HSP20 family protein n=1 Tax=Methylococcaceae bacterium NSM2-1 TaxID=1917482 RepID=A0A257N4D8_9GAMM) HSP 1 Score: 78.6 bits (192), Expect = 1.330e-14 Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 124 DFENDFL---FPTAALTAFPLGGSMNIHRGIGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
+F +DFL +P + FP G G + D+ D + E++ +PGV KE++++ + SN +ITI T KEEKKEE +G + RE T G+ QRT LP D + A+ KDG L T+PK E +T+ IK
Sbjct: 31 NFFDDFLSRRWPRLSDWNFPAGFER-------GFPKVDIIDHDNEVEVQAALPGVKKEDLDVTI--SNQTITIRTSTKEEKKEEEKGKYFRREITRGEFQRTLSLPDNVDDANAKASFKDGILTVTIPKSEKSKRKTIEIK 162
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: UPI001FAD8E4F (Hsp20/alpha crystallin family protein n=1 Tax=Methylobacter sp. S3L5C TaxID=2839024 RepID=UPI001FAD8E4F) HSP 1 Score: 77.4 bits (189), Expect = 3.630e-14 Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = 1
Query: 97 RTGFDRLLQDFENDFLFPTAALTAFPLGGSMNIHRGIG-GLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
RT + LL E D F +P N+ G G + D+ D + E++ +PGV KE++++ + +N ++TI T KEEKKEE +G + RE T G+ QRT LP D + A+ KDG L T+PK E + + IK
Sbjct: 17 RTPSENLLSFDEFDNFFDDFLSRRWPRLLDFNLPAGFDRGFPKIDILDHDNEIEVQAALPGVKKEDLDVTI--NNQTLTIRTSTKEEKKEEEKGKYFRREITRGEFQRTVSLPDNVDDNNAKAAFKDGILTITIPKTEKSKRKNIEIK 162
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Match: UPI0010A3EA89 (Hsp20/alpha crystallin family protein n=1 Tax=Herbaspirillum sp. ST 5-3 TaxID=2567936 RepID=UPI0010A3EA89) HSP 1 Score: 77.0 bits (188), Expect = 3.670e-14 Identity = 40/107 (37.38%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 217 LRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 537
+R D+ +TE A+++K D+PGV KE+I + +D N ++I E KEEK+E+ EG + +ER +G+ R+ LPQ D SK + + +DG L +PK+ ++ ++I+
Sbjct: 44 IRMDVSETEQAYQIKADIPGVKKEDIKVAID--GNVVSIRAETKEEKEEKMEGNMVRKERHYGEQYRSFTLPQDVDESKVEAKYQDGVLSLMLPKKAGGTTKQITIQ 148 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|84712 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8479 ID=mRNA_8479|Name=jgi.p|Trimin1|84712|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=702bp|location=Sequence derived from alignment at Contig_68:288361..289632- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCAACACAACCAACGACAAGCAGAAGACAGCTACATATTACTCAGCTCAback to top protein sequence of jgi.p|Trimin1|84712 >Trimin1|84712|CE84711_168 ID=Trimin1|84712|CE84711_168|Name=jgi.p|Trimin1|84712|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALTAFPLGGSMNIHRGIGGback to top mRNA from alignment at Contig_68:288361..289632- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8479 ID=mRNA_8479|Name=jgi.p|Trimin1|84712|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1272bp|location=Sequence derived from alignment at Contig_68:288361..289632- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_68:288361..289632- >mRNA_8479 ID=mRNA_8479|Name=jgi.p|Trimin1|84712|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=477bp|location=Sequence derived from alignment at Contig_68:288361..289632- (Tribonema minus UTEX_B_3156 )back to top |