mRNA_8477 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A836C9J5_9STRA (HSP20-like chaperone n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J5_9STRA) HSP 1 Score: 291 bits (744), Expect = 3.480e-97 Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 2
Query: 65 MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALNSLPLGGSMVTHRGIGGLLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRMLTIK 538
MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAAL + PLGGSM HRGIGGLLRTDL+DTETAFEMKVDMPGVSKEEININVD+SNNSITITTERKEEKKEET+GGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSR L+IK
Sbjct: 1 MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALTAFPLGGSMNIHRGIGGLLRTDLQDTETAFEMKVDMPGVSKEEININVDESNNSITITTERKEEKKEETEGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRTLSIK 158
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A835ZC62_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC62_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.170e-21 Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 2
Query: 83 PQDRFRTGFDRLLQDFENDFLFPTAALNSLPLGGSMVTHRGIGGLLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKD 475
P FR GFDRL QD EN + + GG+ G GG+L D+ +T+ F++ D+PG+ K++IN+ VDD++N++T++ ERK E + GWL+RER G+ RT LP+TADL KA E KD
Sbjct: 9 PLGMFRGGFDRLFQDLENSMM--GGGTTPMRGGGARANVYG-GGMLLCDMCETDNEFKVCCDVPGLPKDQINVAVDDTHNTMTLSCERKPAAAMEKEEGWLMRERPCGRFSRTLALPETADLEKASAEFKD 136
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A836CLK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.450e-20 Identity = 65/181 (35.91%), Postives = 97/181 (53.59%), Query Frame = 2
Query: 62 IMSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALNS-----LPLG-GSMVTHRG-----------IGGLLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETD-----GGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRMLTIK 538
+M + P RFR FDR+ +D D P + +P+ G++ RG +G +L D++D + +E++VD PGVSKE+INI+VDDS+N+IT+ R +E ++E + G +L RE GK R LP AD++KA+V +GTL TVPK + L IK
Sbjct: 499 MMDPTVEPLSRFRNDFDRMWEDMTADMFGPEMGMGEEWGTQVPVSTGAVAPGRGRRRMRMPGARRLGKVLNMDIRDVDNRYEVRVDCPGVSKEDINISVDDSDNTITVEAMRPQEHEKEGEEKGKQGSYLTREIPHGKMHRICPLPADADVNKAEVTFNNGTLRMTVPKSGAAAGKRLDIK 679
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A835YUR0_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUR0_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 7.220e-20 Identity = 44/121 (36.36%), Postives = 76/121 (62.81%), Query Frame = 2
Query: 176 LGGSMVTHRGIGGLLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRMLTIK 538
+GG + +L D+++T+T ++M+ D+PGV+K++I ++VD++ + T++TE++ EK++ GW RER+ G+A RT LP +D +K V ++G LH PK E P R L I+
Sbjct: 45 MGGPLARSVMAPNMLAMDIRETDTGYDMRFDVPGVTKDDIRVSVDENRRTATVSTEKRTEKEDWDPAGWHTRERSAGRAMRTIALPWDSDSNKVDVRYENGVLHMMCPKSETPPGRRLAIR 165
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A0C1YKJ8_9BURK (Stress protein n=2 Tax=Noviherbaspirillum TaxID=1344552 RepID=A0A0C1YKJ8_9BURK) HSP 1 Score: 83.2 bits (204), Expect = 3.890e-16 Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 2
Query: 218 LRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRMLTIK 538
+R D+ +TE A+ +K D+PGV K++I I+++ N+++I E KEEK+E+ +G + ER FG+ R+ LPQ D SKAQ + +DG L T+PK+ S+ +TI+
Sbjct: 44 IRMDVAETEQAYMVKADIPGVKKDDIKISIE--GNTVSIRAETKEEKQEKMEGNMMRSERYFGEQYRSFTLPQEVDESKAQAKYQDGVLSLTLPKKAGATSKQITIQ 148
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A835Z9D8_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D8_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.710e-15 Identity = 65/189 (34.39%), Postives = 98/189 (51.85%), Query Frame = 2
Query: 38 SYPSQATLIMSLSHRPQDR--FRTGFDRLLQDFENDFL---FPTAALNSLPLGG-------SMVTHRGIGGLLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDG--------GWLVRERTFGKAQRTQVLPQTADLSKAQ-VELKDGTLHFTVPKRE-VPGSRMLTIK 538
S + T + L+ +D R GFD L + FE DF P ++ PL G SM + + D++ T+ A+ + V++PG+ K+++ I VDD N++T+T EEK +T G+L+RER++G+ R+ LP AD+ K Q ELKDG LH VPK+E +R L IK
Sbjct: 85 SPTQRGTSVRRLAQPARDLQDLRRGFDDLFRSFEQDFFGSPSPFPSVFGSPLAGFTPSTILSMPAPPALPAM-SMDVRATDGAYNISVELPGLDKKDLRIEVDDERNALTLTATH-EEKPADTSXXXXXXXXPGYLLRERSYGRVTRSVFLPDDADMKKIQEAELKDGVLHVMVPKKEEAQTTRPLEIK 271
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: UPI0010A3EA89 (Hsp20/alpha crystallin family protein n=1 Tax=Herbaspirillum sp. ST 5-3 TaxID=2567936 RepID=UPI0010A3EA89) HSP 1 Score: 78.2 bits (191), Expect = 2.890e-14 Identity = 40/107 (37.38%), Postives = 69/107 (64.49%), Query Frame = 2
Query: 218 LRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRMLTIK 538
+R D+ +TE A+++K D+PGV KE+I + +D N ++I E KEEK+E+ +G + +ER +G+ R+ LPQ D SK + + +DG L +PK+ ++ +TI+
Sbjct: 44 IRMDVSETEQAYQIKADIPGVKKEDIKVAID--GNVVSIRAETKEEKEEKMEGNMVRKERHYGEQYRSFTLPQDVDESKVEAKYQDGVLSLMLPKKAGGTTKQITIQ 148
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A6I1HCZ3_9BURK (Hsp20 family protein n=3 Tax=unclassified Janthinobacterium TaxID=2610881 RepID=A0A6I1HCZ3_9BURK) HSP 1 Score: 77.8 bits (190), Expect = 4.020e-14 Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 2
Query: 215 LLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRMLTIK 538
L+R D+ +TE A+ +K ++PGV KE+I + +D N ++ITTE K+E+++E G + ER +G+ R+ LPQ D SKA+ DG L T+PK+ G R L I+
Sbjct: 44 LIRVDMSETEQAYMLKAEVPGVQKEDIKVAID--GNQVSITTEVKKEERQEN-GNMVRNERYYGQQYRSFSLPQEVDESKAEARCHDGILELTLPKKPGGGGRTLHIQ 148
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: F3KCP4_9GAMM (Putative small heat shock protein n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KCP4_9GAMM) HSP 1 Score: 77.8 bits (190), Expect = 4.110e-14 Identity = 56/144 (38.89%), Postives = 75/144 (52.08%), Query Frame = 2
Query: 77 HRPQDRFRTGFDRLLQDFENDFLFPTAALNSLPLGGSMVTHRGIGGLLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVRERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKRE 508
H P F GF+ L+ +DFL P A+ V R + R D+K+TETAF++K D+PG+ KE+I + + D SI+ T R +E KEE DG L RER FG+ R L D + +DG L TVPK E
Sbjct: 11 HSPFSVFDDGFNSLM----DDFLLPRRAVG--------VDQRLVP---RIDVKETETAFQVKADLPGMKKEDIELTLQDGVLSISAT--RDDEHKEEADGELLHRERVFGRYVRNISLGNRIDENSVHASFEDGVLEVTVPKLE 137
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Match: A0A031GWS0_9BURK (Heat shock protein Hsp20 n=25 Tax=Janthinobacterium TaxID=29580 RepID=A0A031GWS0_9BURK) HSP 1 Score: 77.4 bits (189), Expect = 5.860e-14 Identity = 54/161 (33.54%), Postives = 87/161 (54.04%), Query Frame = 2
Query: 59 LIMSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALNSLPLGGSMVTHRGIGGLLRTDLKDTETAFEMKVDMPGVSKEEININVDDSNNSITITTERKEEKKEETDGGWLVR-ERTFGKAQRTQVLPQTADLSKAQVELKDGTLHFTVPKREVPGSRMLTIK 538
LI P RF D +++F +DF P L GGS +R D+ +TE A++++ D+PGV+K++I +++D N ++I+ E K+E+ GG VR ER +G+ R+ VLP D + AQ ++G L +PK+E G R L+I+
Sbjct: 5 LIRRDPQNPLARFDPFSD--MEEFMHDFFAPALRLRD---GGS--------ARMRVDISETEQAYQVQADIPGVNKDDIKVSID--GNRVSISAELKDERVTRDGGGKTVRSEREYGQQYRSFVLPHEVDEAGAQARYENGVLLLDLPKKEGTGGRQLSIQ 150 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|84704 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8477 ID=mRNA_8477|Name=jgi.p|Trimin1|84704|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_68:280659..282011+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCTCAACACAACCAACGACAAGTAGAAGACAGTTTAATCCTACCCAAGCCback to top protein sequence of jgi.p|Trimin1|84704 >Trimin1|84704|CE84703_209 ID=Trimin1|84704|CE84703_209|Name=jgi.p|Trimin1|84704|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp MSLSHRPQDRFRTGFDRLLQDFENDFLFPTAALNSLPLGGSMVTHRGIGGback to top mRNA from alignment at Contig_68:280659..282011+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8477 ID=mRNA_8477|Name=jgi.p|Trimin1|84704|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1353bp|location=Sequence derived from alignment at Contig_68:280659..282011+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_68:280659..282011+ >mRNA_8477 ID=mRNA_8477|Name=jgi.p|Trimin1|84704|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=477bp|location=Sequence derived from alignment at Contig_68:280659..282011+ (Tribonema minus UTEX_B_3156 )back to top |