mRNA_8437 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165231
Unique NamemRNA_8437
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A835YVT9_9STRA (Ha-tagged protein kinase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT9_9STRA)

HSP 1 Score: 598 bits (1541), Expect = 3.410e-216
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 1 
Query:    1 MTASAAGGIGITTRGNGGDACLAAPQVAHGKGQGVGEWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
            MTASAAGGIGITTRGNGGDACLAAPQVAHGKGQGVGEWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL
Sbjct:    1 MTASAAGGIGITTRGNGGDACLAAPQVAHGKGQGVGEWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 293
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BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: I2CPJ7_NANGC (Ha-tagged protein kinase domain of mitogen-activated protein kinase kinase kinase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ7_NANGC)

HSP 1 Score: 289 bits (739), Expect = 3.310e-94
Identity = 148/260 (56.92%), Postives = 183/260 (70.38%), Query Frame = 1 
Query:  106 GEWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELR-AVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDR-DISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
            G W    +LGRGA G VY  RL  SGE VAVK + ++   + E+  AV  EI + R L H ++V YLG       LNIFLEY   GSLR ML+  G L+E  T   T+QIL GLR+LH   I HRDVKGAN+LV R+G++KLADFGA+KR+GHES+  GLKGTPHWMAPE+I+G + + GW KADVWS+GCTVVEMLTGRMPWP+  NP+AAMY IANG+ PP+ R D+SP A  FV  CC+ DP  R S++ L+Q  F+
Sbjct:   16 GFWRKLSLLGRGAHGSVYLGRLTKSGELVAVKQVLVNKRVDREMAGAVVQEIGLTRSLSHVHIVRYLGTHQCGSCLNIFLEYCPRGSLRHMLQSEGALTERQTGIYTRQILMGLRYLHENGIAHRDVKGANVLVSREGAMKLADFGASKRLGHESLMSGLKGTPHWMAPEIIKGAKTSEGWKKADVWSLGCTVVEMLTGRMPWPDHPNPIAAMYHIANGQSPPIHREDVSPLAREFVAWCCTLDPNLRPSIEDLLQHPFV 275
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BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A6H5JLC6_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLC6_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 1.400e-90
Identity = 140/257 (54.47%), Postives = 196/257 (76.26%), Query Frame = 1 
Query:  109 EWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
             WV    LGRGA G VY+A ++ + +++AVK I +  + ++EL+  ENEI ++R L HPNVV +LG++    HLNIFLEY+DGGSLR+ L++ GP+ E  TA  T+++L GL +LH+ NITHRD+KGAN+L+ + G++KLADFG +K M  +SV  GLKGTP+WMAPEVI+ Q +  GW +ADVWSVGCTVVEMLTG+MPWPN+ NP+ AM++I +G+KPP++R+IS EAS+F+ +C S  P +R +V+QLM   F+
Sbjct:   77 RWVKCEELGRGAHGTVYRALVLGTSDSIAVKQILMTRMQKSELQVAENEIGVLRRLRHPNVVPFLGVQRVGDHLNIFLEYMDGGSLRRRLDREGPMCERQTAVVTRKVLCGLAYLHSNNITHRDIKGANVLLSKKGAVKLADFGTSKPMDQDSVVSGLKGTPNWMAPEVIKNQLLPGGWLQADVWSVGCTVVEMLTGKMPWPNMPNPLCAMFKIVSGDKPPVNRNISREASSFMAACLSTKPPERYTVEQLMGHPFV 333
[Close]
BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A7S2RVT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVT5_9STRA)

HSP 1 Score: 288 bits (738), Expect = 1.530e-89
Identity = 139/254 (54.72%), Postives = 182/254 (71.65%), Query Frame = 1 
Query:  112 WVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDRDISPEASAFVDSCCSADPMQRKSVDQLMQSA 873
            W   +++GRG FG VY   +  +G+ +AVKTI I G+N  ELR +ENEI M+R L H ++V YLGM+     LNIFLEY  GGSLR++L++ G LSE  T+  T QIL+GL +LH+   THRD+KGAN+L+  +G  KLADFGA K +   S   GLKGTPHWMAPEVIRG+Q  SGW KAD+WSVGCTV+EMLTG+ PWP++ NP+AA+YRIA+G+ PP+  D+SPEA  F+  CC  D   R +   LM+++
Sbjct:   51 WEREQIIGRGGFGTVYLGTIQETGQQMAVKTILIQGMNTKELRNIENEIRMIRDLRHRHIVRYLGMQKTATDLNIFLEYAAGGSLRQLLQEKGGLSEEETSRYTYQILQGLHYLHSNEKTHRDIKGANVLLSAEGFCKLADFGACKHVEATSYVSGLKGTPHWMAPEVIRGEQ-GSGWQKADIWSVGCTVIEMLTGQAPWPDLPNPIAALYRIAHGDSPPIHVDVSPEAREFIRLCCQQDASSRPTASWLMENS 303
[Close]
BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A7S3HB88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HB88_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.950e-78
Identity = 123/263 (46.77%), Postives = 167/263 (63.50%), Query Frame = 1 
Query:  109 EWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDRDI------SPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
            +W    ++G+G    VYKA +  +G  VAVK I IDGL+++++  ++ EI  M+ L HPN++ YLG +  P  + IFLEY D GSLR      GPLSE       + I+ GL +LH   I HRD+K AN L+  +G +KLADFGA+KR   +S+  GLKGTPHWMAPEVI+G QM +GW KADVWS+GCTVVEM T ++P+    NPM AMY+IA+GE P            S +  +F+ +CC+ +P  R   DQL++ A L
Sbjct:    6 DWEHVAVVGKGGSSTVYKALIKSTGGFVAVKQIEIDGLSKDQISGIKGEIETMKDLSHPNILRYLGTQQSPNRVFIFLEYADRGSLRHFYSNRGPLSESQITFCLQGIVAGLNYLHENGIAHRDIKCANCLLGSEGVVKLADFGASKRFESDSIVSGLKGTPHWMAPEVIKGTQMTTGWMKADVWSLGCTVVEMFTAKVPYAEYENPMTAMYKIASGEVPSFKPSTLQPNMPSEDLVSFIHTCCAVEPATRPGADQLLKHALL 268
[Close]
BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A6T5VXF8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VXF8_9STRA)

HSP 1 Score: 253 bits (645), Expect = 7.570e-76
Identity = 120/253 (47.43%), Postives = 168/253 (66.40%), Query Frame = 1 
Query:  112 WVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDR-DISPEASAFVDSCCSADPMQRKSVDQLMQ 867
            W + +++G+G    VYK R   +G+ +A+K INIDG N+ ++ A+ NEI  ++ L H N++ + G +     +NIFLE+   GSL+   +K GP+ E      TKQIL GL +LH + I HRD+K AN L+   G +KLADFGA+K+   ES+  GLKGTP+WMAPEVIRG QM SGW KADVWSVGCT+VEMLT ++P+    NPM AMY IANG+ P L   D + +   F+  CCS++P  R ++ +L++
Sbjct:   10 WEIIKLVGKGGSSSVYKGRFTDTGKLIAIKQINIDGFNKEQILAINNEINTIKGLSHSNIIIFYGTQQTNNKINIFLEFATLGSLQSYYKKKGPMKENQAINCTKQILNGLEYLHNKGIAHRDIKCANCLLTSKGVVKLADFGASKKYESESIVSGLKGTPNWMAPEVIRGTQMTSGWMKADVWSVGCTIVEMLTAKLPFSEYDNPMTAMYHIANGKSPSLQNVDCTDDLKEFIHICCSSEPEVRPNISELVR 262
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BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: F0YC78_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC78_AURAN)

HSP 1 Score: 238 bits (607), Expect = 1.670e-74
Identity = 128/269 (47.58%), Postives = 167/269 (62.08%), Query Frame = 1 
Query:  109 EWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHES-----------VCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEK-PPLDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
             W  G M+G+GAFG VY +  + +GE +AVK ++   ++  E  A+ENE+ MM+ L HPN+V YLG+++    L IFLEYV GGSLR +L+K G L E      ++QIL GL +LH   I HRD+K AN+LV  DGS+KLADFGA+KRM   S             GG KGTP WMAPEVI+    + GW KADVWSVGCTV+EM TGR PW   SNP+ AMY IA  E+ P +  ++S +   F+  C   +P  R  V  L+   F+
Sbjct:    2 RWQRGEMIGKGAFGSVYLSLNLDTGELMAVKHLDCAEVSSRERSALENEVSMMKGLCHPNIVRYLGVDSSNDALAIFLEYVPGGSLRSLLDKFGKLEEDIVRLYSRQILLGLEYLHGNAIAHRDIKAANVLVSNDGSVKLADFGASKRMAAPSNLNGGGAVGALQTGGAKGTPLWMAPEVIKAAPKSQGWRKADVWSVGCTVIEMSTGRPPWSQYSNPVTAMYHIACVEELPDMPPNLSDDGIQFLWLCFQREPRLRPEVTALLLQGFV 270
[Close]
BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A024U8T7_9STRA (STE/STE11 protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8T7_9STRA)

HSP 1 Score: 241 bits (614), Expect = 4.750e-74
Identity = 121/260 (46.54%), Postives = 170/260 (65.38%), Query Frame = 1 
Query:  109 EWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTG-PLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGS-LKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPP-LDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
            +W+    +G+GA G VY+     +G  VA+K +NI GL+++E+ A+ +E  +M+ L H ++V Y G+    + L I +EY+ GGSL   +   G  L+   T   T Q+L  ++ LH   I HRD+K AN+L+  D S +KLADFGA K +G  SV GGLKGTPHWMAPEVI+ QQ + GW KAD+WS+GCTV+EMLTGR PW   SNP+ AMY+I + E  P +  D+  EA++F++SC   DP +R S  +L+ SAFL
Sbjct:   20 KWIKKEKIGQGAQGTVYRCVDAATGRIVAMKEVNIKGLSDHEIDALTSEATVMKSLSHKHIVQYYGVRHKKRTLEISMEYMPGGSLSAYIRSVGGSLTLDRTKSYTWQLLRAVQFLHDHRIAHRDIKSANVLLTDDQSQIKLADFGALKEIGSVSVVGGLKGTPHWMAPEVIKEQQTSEGWMKADIWSLGCTVLEMLTGRTPWQEYSNPLTAMYKIVSSESTPQVPSDLPLEATSFLESCFQRDPTKRPSASELLHSAFL 279
[Close]
BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A7S0P7A6_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P7A6_CAFRO)

HSP 1 Score: 236 bits (603), Expect = 5.620e-72
Identity = 119/264 (45.08%), Postives = 163/264 (61.74%), Query Frame = 1 
Query:  109 EWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCG------GLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPPLDRD-ISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
             W  G  LG GA G V++   V +GE +A+K I+   L+  EL A+E E+ ++R   HPN+V YLG +     L +FLEYV GGS++++LE+ G   E      T+ +L GL +LH   I HRD+KG N+LV  DG +KLADFGA+KR+    + G      G+KGTP WMAPEV+R Q+  +GW +AD+WSVGCTV+EM TGR PW   +NP+ AMY IA  +KPP   D +S     F+ +C   DP +R  V  L+   F+
Sbjct:   12 RWRKGERLGAGAVGTVFQGLNVDTGELMAIKQIDSADLSARELAALEQEVSLLRSFRHPNIVRYLGAQREGDTLCVFLEYVPGGSVKRVLERFGGFEEGLVRRYTRHLLVGLEYLHRNGIAHRDIKGGNVLVALDGVIKLADFGASKRISAPPLAGASRTGTGVKGTPQWMAPEVVREQEAETGWRRADIWSVGCTVIEMATGRPPWSEFANPVTAMYHIAVTDKPPAFPDSLSAVGHDFLSACLQLDPRRRPDVSALLLHPFV 275
[Close]
BLAST of jgi.p|Trimin1|165231 vs. uniprot
Match: A0A6G0WUE4_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUE4_9STRA)

HSP 1 Score: 236 bits (601), Expect = 7.030e-72
Identity = 121/260 (46.54%), Postives = 165/260 (63.46%), Query Frame = 1 
Query:  109 EWVLGRMLGRGAFGVVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHYLGMEAHPKHLNIFLEYVDGGSLRKMLEKTG-PLSEPHTACNTKQILEGLRHLHTRNITHRDVKGANILVCRDGS-LKLADFGAAKRMGHESVCGGLKGTPHWMAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRIANGEKPP-LDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL 879
             W     +G+GA G VY+     +G TVA+K IN  GL+++E+ A+ +E  +M+ L H ++V Y G++   + L I +E++ GGSL   +   G  L+   T   T Q+L  ++ LH   I HRD+K AN+L+  D S +KLADFGA K +G  SV GGLKGTPHWMAPEVI+ QQ + GW KAD+WS+GCTV+EMLTGR PW   SNP+ AMY+I + +  P +  D+  EA AFV SC   DP +R     L+ SAFL
Sbjct:   19 RWHEKEKIGQGAQGTVYRCVEAATGRTVAIKEINTKGLSDHEIEALMSEATVMKSLQHKHIVQYHGVKQKKRTLEISMEFMPGGSLSAYIRTVGGSLTLERTKNYTWQLLRAVQFLHEHRIAHRDIKSANVLLSEDQSQIKLADFGALKEIGSISVVGGLKGTPHWMAPEVIKEQQTSEGWMKADIWSLGCTVLEMLTGRTPWQEYSNPLTAMYKIVSSDSTPQVPEDLPSEAIAFVQSCFQRDPAKRPEAGDLLHSAFL 278
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165231 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YVT9_9STRA3.410e-216100.00Ha-tagged protein kinase (Fragment) n=1 Tax=Tribon... [more]
I2CPJ7_NANGC3.310e-9456.92Ha-tagged protein kinase domain of mitogen-activat... [more]
A0A6H5JLC6_9PHAE1.400e-9054.47Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A7S2RVT5_9STRA1.530e-8954.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3HB88_9STRA1.950e-7846.77Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6T5VXF8_9STRA7.570e-7647.43Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
F0YC78_AURAN1.670e-7447.58Protein kinase domain-containing protein (Fragment... [more]
A0A024U8T7_9STRA4.750e-7446.54STE/STE11 protein kinase n=1 Tax=Aphanomyces invad... [more]
A0A7S0P7A6_CAFRO5.620e-7245.08Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A6G0WUE4_9STRA7.030e-7246.54Protein kinase domain-containing protein n=2 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:990573..996370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165231|e_gw1.36.64.1
DescriptionMAP kinase kinase kinase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0198@1|root,KOG0198@2759|Eukaryota
Evalue4.8e-89
Seed ortholog2880.D8LT93
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMEKK and related serine/threonine protein kinases
Ec32 orthologEc-12_005680.1
TranscriptId165553
TrackFilteredModels1
ProteinId165231
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165231gene_8437Tribonema minus UTEX_B_3156 geneContig_36 990573..996370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165231Trimin1|165231|e_gw1.36.64.1Tribonema minus UTEX_B_3156 polypeptideContig_36 990573..996370 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8437_1exon_8437_1Tribonema minus UTEX_B_3156 exonContig_36 990573..990812 +
exon_8437_2exon_8437_2Tribonema minus UTEX_B_3156 exonContig_36 992911..993099 +
exon_8437_3exon_8437_3Tribonema minus UTEX_B_3156 exonContig_36 993783..993840 +
exon_8437_4exon_8437_4Tribonema minus UTEX_B_3156 exonContig_36 994532..994695 +
exon_8437_5exon_8437_5Tribonema minus UTEX_B_3156 exonContig_36 996143..996370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8437CDS_8437Tribonema minus UTEX_B_3156 CDSContig_36 990573..990812 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8437 ID=mRNA_8437|Name=jgi.p|Trimin1|165231|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_36:990573..996370+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCATCAGCAGCAGGGGGAATCGGCATCACCACCAGGGGGAACGG
AGGCGATGCATGTCTTGCGGCGCCACAGGTGGCTCACGGGAAAGGGCAGG
GGGTTGGCGAGTGGGTGCTGGGCCGGATGCTGGGCAGGGGGGCGTTCGGC
GTGGTGTACAAAGCGCGGCTGGTTCCCAGCGGCGAGACTGTCGCTGTGAA
GACGATCAACATTGACGGTCTCAATGAGAACGAGCTCAGGGCTGTGGAGA
ATGAGATCATGATGATGCGCCACCTGCACCACCCCAACGTGGTGCACTAC
CTGGGCATGGAGGCGCACCCAAAGCACCTCAACATCTTCCTGGAGTACGT
TGATGGCGGCAGCCTGCGTAAAATGCTGGAGAAGACAGGCCCGCTGTCAG
AGCCGCACACCGCGTGCAATACCAAACAGATTCTAGAAGGCCTGCGACAC
CTCCACACCAGAAACATCACCCATAGAGATGTGAAAGGCGCCAACATATT
GGTGTGTCGCGACGGCAGCCTGAAGCTGGCAGACTTTGGTGCGGCCAAGC
GCATGGGACACGAGAGTGTGTGTGGTGGCCTCAAAGGCACTCCCCACTGG
ATGGCCCCAGAGGTCATTAGGGGGCAGCAGATGGCCAGCGGCTGGTTCAA
GGCGGACGTGTGGAGCGTCGGCTGCACGGTTGTGGAGATGCTCACGGGGC
GCATGCCCTGGCCCAACATCTCCAACCCCATGGCCGCCATGTACCGCATT
GCCAATGGCGAGAAGCCCCCGCTCGACAGGGACATCAGCCCGGAGGCCAG
CGCGTTTGTGGACAGCTGCTGCAGCGCCGATCCCATGCAGCGCAAGTCGG
TGGACCAGCTCATGCAGTCAGCGTTCCTG
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protein sequence of jgi.p|Trimin1|165231

>Trimin1|165231|e_gw1.36.64.1 ID=Trimin1|165231|e_gw1.36.64.1|Name=jgi.p|Trimin1|165231|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MTASAAGGIGITTRGNGGDACLAAPQVAHGKGQGVGEWVLGRMLGRGAFG
VVYKARLVPSGETVAVKTINIDGLNENELRAVENEIMMMRHLHHPNVVHY
LGMEAHPKHLNIFLEYVDGGSLRKMLEKTGPLSEPHTACNTKQILEGLRH
LHTRNITHRDVKGANILVCRDGSLKLADFGAAKRMGHESVCGGLKGTPHW
MAPEVIRGQQMASGWFKADVWSVGCTVVEMLTGRMPWPNISNPMAAMYRI
ANGEKPPLDRDISPEASAFVDSCCSADPMQRKSVDQLMQSAFL
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mRNA from alignment at Contig_36:990573..996370+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8437 ID=mRNA_8437|Name=jgi.p|Trimin1|165231|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5798bp|location=Sequence derived from alignment at Contig_36:990573..996370+ (Tribonema minus UTEX_B_3156 )
ATGACAGCATCAGCAGCAGGGGGAATCGGCATCACCACCAGGGGGAACGG
AGGCGATGCATGTCTTGCGGCGCCACAGGTGGCTCACGGGAAAGGGCAGG
GGGTTGGCGAGTGGGTGCTGGGCCGGATGCTGGGCAGGGGGGCGTTCGGC
GTGGTGTACAAAGCGCGGCTGGTTCCCAGCGGCGAGACTGTCGCTGTGAA
GACGATCAACATTGACGGTCTCAATGAGAACGAGCTCAGGGTGAGTTTGG
GTGGCTTTTGCTGCATATTTGGGTAAAAATCATCAGATAGATAAGTACTG
CGGAGGTCCACATCGTTGTCAATTCTGCTATGACTGTGGCGTTGTTGAAC
TGGTGGAGTATTGCAGCGCGACGTAAAGTTGCTGCTGGGACATGGCGAGT
CTCACCGCAGTTATTCCAGCCATTAAGCCCTGTTTGACAACATCATGACT
GCAAGTCTTTTGATTGTCCTGGGGTGGCTGCACCCGCTTGTGGTGCCATG
TGTCCAACATGCTGCGGCATGGATAGACCGCACTTGAGTCGATTAACGTC
GCCATAGTCTTTCTGATACATTACAAACTGCCCTTAGACTGTACATCAGT
ACCTGCTGCAAGCAGAAGAAGGTTACCAACTCGGTCAGGAACCTATGGTT
CCGTGCTGTAGCTGATGTTCACGTGCACAAGAGCGCTGTGCTTGACAACA
TCAAAGTCATCAGAGTGCTGGTGGCCCCATATGCGCTCAGTGAACTCATA
CTTCTATATGGCTTGCTTCTGTTGAGAGCTGACGATGTCTGCTTGACAAC
AAGGAGAAGAGAGAAAAAACAGAACGCGCTGCCCTGCTAATCAAGTTCAA
GCAGCGTCGGTGACGACATGCAAGCACGGTCTGTTGAAGCATATGCTTAT
CGCACTATGCCAGTTTGCTGAGGGCATCATGGAGTTGCTACTGATGCCGC
TGTGGCTCTTTGACTGAGCTCAGCCAGCAGCAGCCCTTCTATGAGCTTTG
CGGATAGCTCCGTTTACAACAGAGCCTCATTCCGGATGATGCTCCAGTAG
CACTGAAGTACCAGAGGACAGTTGGGTCACCGTGCGCGCTGCATGCATCC
CTGATCTGGTGCTGAAGTGTAGCCGGTTGAGGTAGTTAGGGCAGCTGGCG
TGGCTGCTTCGGATCTGAGTCATAGCACAAGTGCAAGGCAAGGCAACGCC
GCCTTGCAGGCATTATGGTGACGTGCAGCACCCACATCAATGTGTATTCG
CAGATTGTTCCTTCGGAACAAGGCAGACCTCTGAGCTTGTCTCATTGCAG
CGCTGAATACTTCGCCGCTGTTGATTTGTGTATACCCAGTGGTCTCGCTG
TGGACGCTGCTCTGCATCGTCTGCATGTTCCGGCTGCTGCCAACATGACA
TTGAAAGTCTGACTTCAGCATACCTGACATGATGTGGCCTGACTCGTCAG
CGTAGTGGTATGCAGCCTGTCTTCGTACATGGTCTGACTGCTGATTTCAA
GCTGCCAGTGTACTGCAGCCAGTGACTGTACCTGACTGCTTGACTATCTG
AATGTTGACGAGGGGTCATATTAAAATGGGGATTGTTCTAGCGTGACGTG
ATGGTGCATGCTGGCCACTCCACACCTCTGAACAGTATGTGCTACAGGCT
GCATGCGGACTCACCAACAGCGGCGGTATGAATAGCGTGCCACGACGACA
TCGCATCAGCACAGTGCTCTAGCCAGCAACACCTGTGTGCACCAGCTTCA
TCCACGACTATCTGCTCTGCAGAGGCTACTCTTCTCTTTTTGCTGGTTGG
AGCATGAAGCAAGTCGTGGGAGCTGAAATCGCAGCACCTGCAGGGTGTTC
GTCTGCGTATTGCCTATTCCTGCCTTTGTATTATCTAGCACTTGACCACA
CTGCACTTGTGTCCTCATGGCAGATGCTACATAGCTGCCCTCGCCGCCTC
GCACTCTCACCCAACCCCTGGTATCTTATTGCAGCTGAGTGCTGCAGTGT
ATTGCTCACTTGCACGCTCACTCACTCACTCACTCACTCACTCACTCCCT
GTGCTTGCGCAGCCACTGGCCCACGTAAGCCAGCCTGTAACATGGCATTC
CTGACGCATTCGCATAGTCTGGCGCTACATATAAACTTCAATCACAGTTT
GTGGCAGTTACAACTTGATTTTTTGGTCCAACATCTGACCGGTGTAACGC
ATCTTGTACCGCGCCGCGTAGTGCCTACACAATGCTCACTGCTATTCTCA
TTTGCATACTTTTGTGGTCACTGACATTCTTATTTGTGTATTTTTGTCGT
CACTGACATTCTCCTGTACACACCTTGCTGGTCACCAGGCTGTGGAGAAT
GAGATCATGATGATGCGCCACCTGCACCACCCCAACGTGGTGCACTACCT
GGGCATGGAGGCGCACCCAAAGCACCTCAACATCTTCCTGGAGTACGTTG
ATGGCGGCAGCCTGCGTAAAATGCTGGAGAAGACAGGCCCGCTGTCAGAG
CCGCACACCGCGTGCAATACCAAACAGGTGCGTGCTTGGCTTCCTTCACA
AGGTGACTCACACATATCAGAGCCGCACGGTGCGTGCAATACTAAGCAGG
TGCGTGCTTGACTTCCTTCACGAGTCGAATTATGCCTATCAGAGCCGCAC
ACTGCGTGCAATACCAAGCAGGTGCGTGCTTGACTTCCTTCACGAGTCGA
ATTACACCTATCAGAGCCGCACACCGCGTGCAACACCAAACAGGTACGTG
CCTTCACCTCTTTCACAAGTGGAATCGCAACTGTCTGCAAAGTGGGCCAG
TGGGCGTTTAGCCTGTCGGGGCAGTGTTATAGCCCACACACAACATGTAC
ACTCGTCATGGGAGGAGCCAAGTGCACATGTCGGTTTGTACATACAGTAG
ATCAAAGTGTGCATCTATAACAGCACACTGACCACAGTTGTGGCTTGCAT
CAGCATGGCTGGGTTGACGTATTGCAGGCAGTCTGTGTTGGTGTGATGGC
ATGAGACGCTTCTAATGTGACAACCAGGCACGTTGTTGTCACCCATGCGA
ATGTACGCAGCTCCATCAGAACTGGCCGTGTGTGCTTGCATTTGTTTAAG
TTCTGCTTCTGCCTCAGCTCCCCCTGCGTGTGGCGGTGGACTTCTGCACT
GGGACTCCCATCCTTACCTACCTGCTTTGGCCTCACCTGCCCCTGATTCG
TTGTGTGCAGATTCTAGAAGGCCTGCGACACCTCCACACCAGAAACATCA
CCCATAGAGATGTGAAAGGTGAGAGTGGGGGGTGGCAAAGTGCGCTGTCG
TGACACGTGTACCTTGACTCAAAGCAAGGTCGATGCAACGCGTTATGTGC
GTCATACATTTATCAGCTCCAGGTTCATTGCATCGCATATGTTGACAGTT
GACATGCGTGCTGCCTGCTGCATAGCTGCTGTGAGGACCCGCATTGAATG
CTTGCTTTCCTACGCACTGCTGATCATCAGCATGACATGTATTTCAGTAA
GTAGGTATCTCTAGGTCTGTGCATCATGTCTGTCGGCTGAATGACAGGCA
AAGTCATTGCCGATACTAGCGACTTCACACTCGCTGCAGTGATGCATGCT
CATATGCAGTGTGCCCCAACTGCCTGACAGCTGCACCCTTGTTGCATTCC
TCTTCGCATGTACTGTTATGTGCAGCGTCAAGTGCATCACTGCGCTCCAA
TGCTGCCATGGGCAATGTATACAGTCTCAATGCCCAGCTGGGGGGTTATG
ATCTGCTCTCAATCCAAACCCTGTCCCTGCACTGGCGCTACCATACATGA
TACTTATCGGAACTTGACCCAATCACTGCCCTCAACTTTGCTCCGATCGC
ACCCCTTCCACTGCTCGATTGTGCCTGCGACTGCATCACTGCACCTCACC
CACCACCAAACTCACCCACTTTCCAACTTCACCTTCTGCATCAACTTCCT
GTGTGGCAGGCGCCAACATATTGGTGTGTCGCGACGGCAGCCTGAAGCTG
GCAGACTTTGGTGCGGCCAAGCGCATGGGACACGAGAGTGTGTGTGGTGG
CCTCAAAGGCACTCCCCACTGGATGGCCCCAGAGGTCATTAGGGGGCAGC
AGATGGCCAGCGGCTGGTTCAAGGTGAACTTAAGAGTGAAGTTTGACAGT
GAAGTTTGAGAGTGATGTTGGAGAGGCCATGATTCAGCACTCTTGTAAAC
TCAATTCAATGTGGAGGCTGATTTGCTTCAACCTGCAAGCATGTGAAGTA
GGCAGGCAAGGGAATACGCGGCCGCTGCAAGCACGTTGATGTAGCCAATA
AGACACAGAATTAAAGTTGTGTTTTTCGACATGGGAAATGTGATTGGGTT
TGAGCACTTGCAGTTGTGGAGTGGACAAGTCATGAAGCTCAACCTCGACC
CCAACCCACCCTGACCCTAACTCTTCCCTGCAAGAAAGCTGCAATGTGAG
GTTTGTTGTTGAAATGGGGTCATCATGTTCACCAGGTGACACTACAGTAT
TCACATGTGAAAGTGATCCGCTGACGCTTCAACTACTTCATCCTTTGTAA
ATGAAGTACCGACCGAGTCATGCCAATGCACTTTGCGGTATACAAAGCAA
CCTGTAACGTTCACGTACCGTCTCTGATGAGAAGTGGGTCGCTTGTGGCG
TTAAGCCATTGCCCTCGCTTTGCTTCGGAGTGCGCTCAGTACTAAAGTGC
ACACGCTCACGTCTGTTTTTACCTGCCTACCTCAACATGTGAAGTTTAGT
ACATGCAGTACTAAAAGTGAACTTCGTGCATACCTCTGTAAACGAATTGC
AGGTATCATACAAACGACCTGCAAGTGTCCATGTGAGAGCGCTGTTGGCG
ACTGATGCCACTATATGAAGTTTAGAAGAATTACCATTTGTCGTGAGACA
GGAATCCACTCTTGCAGGCTAGCTTCAAGCCTGGAGGGCATGTTGTGTCC
CACCAAGGCACCACATGCATGTTTGTATACCCTGAAGGCAATCAAATGAA
CAAGCAAATGACAATGCGACATGGCGTTGCATGTGCTTAGCTTAGCCGAG
CGTGTGCAGTATCAGCTACTGCGCGACACAGTAGTGCAATGGCGCAGCAT
CAGCTACTGCGCAATACAGAACTGCAGGTGCCCTGGAAGCACCTATTCAT
GACACATGTCTGTATTGAGCTCTCTCAATTCTCAGCTCGTGTCACATTGT
CGCCGCCCTGTGTCATCATCTTTTGACAACACTTGCTCCAATGCTATGAT
CCAACGAGCGACACGTAAGCATTGTGTAACTGTCATGTGTAACTGTCTGG
CGGATGTGTGGAGCGTCAACGGCCGCGTGACTCATATTAGGACTCGTGAC
TCGTCTCACCATCCCACCATTCACTCACACATGGTGTGCGATCTGTGTAA
CTGTCACGTGTGACTGTCAGGCGGATGTGTGGAGCGTGGGCTGCACGGTG
GTGGAGATGCTCACGGTGTGACTCAAACTTTGACTCATGACTCGCCTCAC
CATTACAAGCCCACCAGTCGCTCGCATGGCGTGCGTGAACCATTGTGTAA
CTGTCATGTGTAACTGTCAGGCGGACGTGTGGAGCGTCGGCTGCACGGTT
GTGGAGATGCTCACGGGGCGCATGCCCTGGCCCAACATCTCCAACCCCAT
GGCCGCCATGTACCGCATTGCCAATGGCGAGAAGCCCCCGCTCGACAGGG
ACATCAGCCCGGAGGCCAGCGCGTTTGTGGACAGCTGCTGCAGCGCCGAT
CCCATGCAGCGCAAGTCGGTGGACCAGCTCATGCAGTCAGCGTTCCTG
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Coding sequence (CDS) from alignment at Contig_36:990573..996370+

>mRNA_8437 ID=mRNA_8437|Name=jgi.p|Trimin1|165231|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_36:990573..996370+ (Tribonema minus UTEX_B_3156 )
ATGACAGCATCAGCAGCAGGGGGAATCGGCATCACCACCAGGGGGAACGG
AGGCGATGCATGTCTTGCGGCGCCACAGGTGGCTCACGGGAAAGGGCAGG
GGGTTGGCGAGTGGGTGCTGGGCCGGATGCTGGGCAGGGGGGCGTTCGGC
GTGGTGTACAAAGCGCGGCTGGTTCCCAGCGGCGAGACTGTCGCTGTGAA
GACGATCAACATTGACGGTCTCAATGAGAACGAGCTCAGGGCTGTGGAGA
ATGAGATCATGATGATGCGCCACCTGCACCACCCCAACGTGGTGCACTAC
CTGGGCATGGAGGCGCACCCAAAGCACCTCAACATCTTCCTGGAGTACGT
TGATGGCGGCAGCCTGCGTAAAATGCTGGAGAAGACAGGCCCGCTGTCAG
AGCCGCACACCGCGTGCAATACCAAACAGATTCTAGAAGGCCTGCGACAC
CTCCACACCAGAAACATCACCCATAGAGATGTGAAAGGCGCCAACATATT
GGTGTGTCGCGACGGCAGCCTGAAGCTGGCAGACTTTGGTGCGGCCAAGC
GCATGGGACACGAGAGTGTGTGTGGTGGCCTCAAAGGCACTCCCCACTGG
ATGGCCCCAGAGGTCATTAGGGGGCAGCAGATGGCCAGCGGCTGGTTCAA
GGCGGACGTGTGGAGCGTCGGCTGCACGGTTGTGGAGATGCTCACGGGGC
GCATGCCCTGGCCCAACATCTCCAACCCCATGGCCGCCATGTACCGCATT
GCCAATGGCGAGAAGCCCCCGCTCGACAGGGACATCAGCCCGGAGGCCAG
CGCGTTTGTGGACAGCTGCTGCAGCGCCGATCCCATGCAGCGCAAGTCGG
TGGACCAGCTCATGCAGTCAGCGTTCCTG
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