mRNA_8421 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165223
Unique NamemRNA_8421
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165223 vs. uniprot
Match: A0A835YUM6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM6_9STRA)

HSP 1 Score: 317 bits (812), Expect = 1.120e-109
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 MNNRDKAAKRAGAASKKARVEIDKKDLLTSLRQLHRIKLLDGGFAYTEYRYARGASSGRLFIKGAGLQNLARPARHYLCAGFFRDWDMVSCHHAILLQLCGRHGIPCPKLAKYVENPKAFREKVRDALGCDYDTAKEFLIGLTYGAAPKLEGVP 462
            MNNRDKAAKRAGAASKKARVEIDKKDLLTSLRQLHRIKLLDGGFAYTEYRYARGASSGRLFIKGAGLQNLARPARHYLCAGFFRDWDMVSCHHAILLQLCGRHGIPCPKLAKYVENPKAFREKVRDALGCDYDTAKEFLIGLTYGAAPKLEGVP
Sbjct:    1 MNNRDKAAKRAGAASKKARVEIDKKDLLTSLRQLHRIKLLDGGFAYTEYRYARGASSGRLFIKGAGLQNLARPARHYLCAGFFRDWDMVSCHHAILLQLCGRHGIPCPKLAKYVENPKAFREKVRDALGCDYDTAKEFLIGLTYGAAPKLEGVP 154
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BLAST of jgi.p|Trimin1|165223 vs. uniprot
Match: A0A835YJ71_9STRA (Herpes_ori_bp domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ71_9STRA)

HSP 1 Score: 172 bits (435), Expect = 9.270e-47
Identity = 91/154 (59.09%), Postives = 103/154 (66.88%), Query Frame = 1 
Query:    1 MNNRDKAAKRAGAASKKARVEIDKKDLLTSLRQLHRIKLLDGGFAYTEYRYARGASSGRLFIKGAGLQNLARPARHYLCAGFFRDWDMVSCHHAILLQLCGRHGIPCPKLAKYVENPKAFREKVRDALGCDYDTAKEFLIGLTYGAAPKLEGVP 462
            MNN DKA KRA A++KK   EIDKKDL T LRQL RI+  DG +  TE                           HYLCAG+FRDWD+ +CHHAIL+QLC R+GIPCPK  KYVENPKA REKVR+ALG DYDTAKE LIGLT+G APK + VP
Sbjct:   35 MNNHDKATKRAAASTKKEMAEIDKKDLWTLLRQLARIQPKDG-YVNTE---------------------------HYLCAGYFRDWDIAACHHAILVQLCARYGIPCPKRIKYVENPKAIREKVRNALGFDYDTAKELLIGLTFGKAPKWDDVP 160
[Close]
BLAST of jgi.p|Trimin1|165223 vs. uniprot
Match: A0A835Z0Z4_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Z4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.420e-12
Identity = 44/127 (34.65%), Postives = 59/127 (46.46%), Query Frame = 1 
Query:   91 LRQLHRIKLLDGGFAYTEYRYARGASSGRLFIKGAGLQNLARPARHYLCAGFFRDWDMVSCHHAILLQLCGRHGIPCPKLAKYVENPKAFREKVRDALGCDYDTAKEFLIGLTYGA----APKLEGV 459
            LR+L    L      Y    Y RG S GRL   G  LQ+  RP R+ +  GF  D D+  CH  +  Q   + G   P +  Y  + KA+R +V +  GCDY+ AK  L    YG     AP L+ +
Sbjct:   61 LRRLTEYLLKADECGYVRVTYKRGRSFGRLTAVGPSLQSFPRPIRYLITFGFLYDVDIDCCHPMLFWQYVEKLGGAAPLMKAYSLDAKAYRARVMEEAGCDYEEAKALLQSACYGVPSSLAPSLQAL 187
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165223 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YUM6_9STRA1.120e-109100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YJ71_9STRA9.270e-4759.09Herpes_ori_bp domain-containing protein n=1 Tax=Tr... [more]
A0A835Z0Z4_9STRA1.420e-1234.65DUF5906 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:862113..862574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165223|e_gw1.36.10.1
Hectar predicted targeting categoryother localisation
TranscriptId165545
TrackFilteredModels1
ProteinId165223
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165223gene_8421Tribonema minus UTEX_B_3156 geneContig_36 862113..862574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8421_1exon_8421_1Tribonema minus UTEX_B_3156 exonContig_36 862113..862574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8421CDS_8421Tribonema minus UTEX_B_3156 CDSContig_36 862113..862574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165223Trimin1|165223|e_gw1.36.10.1Tribonema minus UTEX_B_3156 polypeptideContig_36 862113..862574 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8421 ID=mRNA_8421|Name=jgi.p|Trimin1|165223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_36:862113..862574- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACCGCGACAAGGCCGCCAAGAGGGCGGGCGCCGCCAGCAAGAA
GGCGAGGGTGGAGATCGACAAGAAGGATCTGCTGACGTCGCTGCGCCAGC
TGCACCGCATCAAACTCCTCGACGGAGGCTTTGCCTACACGGAGTACCGC
TACGCCAGGGGCGCCAGTTCCGGCAGACTCTTCATCAAGGGGGCGGGGCT
GCAGAACCTGGCCAGGCCCGCGAGGCACTACCTGTGCGCGGGATTCTTCC
GCGACTGGGACATGGTCTCCTGCCACCACGCCATCCTCCTGCAGCTCTGC
GGCCGCCATGGCATTCCCTGTCCCAAGCTCGCCAAGTACGTGGAGAATCC
GAAGGCCTTCCGCGAGAAGGTGCGAGACGCGCTGGGCTGCGACTACGACA
CGGCGAAGGAGTTCCTCATCGGGCTCACCTACGGCGCGGCACCCAAACTG
GAGGGAGTGCCG
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protein sequence of jgi.p|Trimin1|165223

>Trimin1|165223|e_gw1.36.10.1 ID=Trimin1|165223|e_gw1.36.10.1|Name=jgi.p|Trimin1|165223|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=154bp
MNNRDKAAKRAGAASKKARVEIDKKDLLTSLRQLHRIKLLDGGFAYTEYR
YARGASSGRLFIKGAGLQNLARPARHYLCAGFFRDWDMVSCHHAILLQLC
GRHGIPCPKLAKYVENPKAFREKVRDALGCDYDTAKEFLIGLTYGAAPKL
EGVP
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mRNA from alignment at Contig_36:862113..862574-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8421 ID=mRNA_8421|Name=jgi.p|Trimin1|165223|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=462bp|location=Sequence derived from alignment at Contig_36:862113..862574- (Tribonema minus UTEX_B_3156 )
ATGAACAACCGCGACAAGGCCGCCAAGAGGGCGGGCGCCGCCAGCAAGAA
GGCGAGGGTGGAGATCGACAAGAAGGATCTGCTGACGTCGCTGCGCCAGC
TGCACCGCATCAAACTCCTCGACGGAGGCTTTGCCTACACGGAGTACCGC
TACGCCAGGGGCGCCAGTTCCGGCAGACTCTTCATCAAGGGGGCGGGGCT
GCAGAACCTGGCCAGGCCCGCGAGGCACTACCTGTGCGCGGGATTCTTCC
GCGACTGGGACATGGTCTCCTGCCACCACGCCATCCTCCTGCAGCTCTGC
GGCCGCCATGGCATTCCCTGTCCCAAGCTCGCCAAGTACGTGGAGAATCC
GAAGGCCTTCCGCGAGAAGGTGCGAGACGCGCTGGGCTGCGACTACGACA
CGGCGAAGGAGTTCCTCATCGGGCTCACCTACGGCGCGGCACCCAAACTG
GAGGGAGTGCCG
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Coding sequence (CDS) from alignment at Contig_36:862113..862574-

>mRNA_8421 ID=mRNA_8421|Name=jgi.p|Trimin1|165223|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=462bp|location=Sequence derived from alignment at Contig_36:862113..862574- (Tribonema minus UTEX_B_3156 )
ATGAACAACCGCGACAAGGCCGCCAAGAGGGCGGGCGCCGCCAGCAAGAA
GGCGAGGGTGGAGATCGACAAGAAGGATCTGCTGACGTCGCTGCGCCAGC
TGCACCGCATCAAACTCCTCGACGGAGGCTTTGCCTACACGGAGTACCGC
TACGCCAGGGGCGCCAGTTCCGGCAGACTCTTCATCAAGGGGGCGGGGCT
GCAGAACCTGGCCAGGCCCGCGAGGCACTACCTGTGCGCGGGATTCTTCC
GCGACTGGGACATGGTCTCCTGCCACCACGCCATCCTCCTGCAGCTCTGC
GGCCGCCATGGCATTCCCTGTCCCAAGCTCGCCAAGTACGTGGAGAATCC
GAAGGCCTTCCGCGAGAAGGTGCGAGACGCGCTGGGCTGCGACTACGACA
CGGCGAAGGAGTTCCTCATCGGGCTCACCTACGGCGCGGCACCCAAACTG
GAGGGAGTGCCG
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