mRNA_8415 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A836CFE2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFE2_9STRA) HSP 1 Score: 463 bits (1192), Expect = 1.870e-163 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 Query: 1 MPRKLLDLNVKFPGMPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTWDLDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLKEQKLIYESLGGMMSEEDFLRKLHLYTLAPHSYMFVDLWADKTKKARKKVVLVKKPKT 702 MPRKLLDLNVKFPGMPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTWDLDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLKEQKLIYESLGGMMSEEDFLRKLHLYTLAPHSYMFVDLWADKTKKARKKVVLVKKPKT Sbjct: 1 MPRKLLDLNVKFPGMPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTWDLDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLKEQKLIYESLGGMMSEEDFLRKLHLYTLAPHSYMFVDLWADKTKKARKKVVLVKKPKT 234
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A835ZKI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI0_9STRA) HSP 1 Score: 370 bits (950), Expect = 4.790e-127 Identity = 193/246 (78.46%), Postives = 200/246 (81.30%), Query Frame = 1 Query: 43 MPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTWDLDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLK------------------------------------------EQKLIYESLGGMMSEEDFLRKLHLYTLAPHSYMFVDLWADK 654 MPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRM+RAEGSINK+FLISPTADSNSIYKAILTPEDKTWDLDKNAFQHIQEVVQECEADAAKYRHDLEY+IAYKKFV G+ ISHVEENLLETGGFREI PKRPSPALVLDD+QGSILMSQSARNPLVNLVLK EQKLIYESLGGMMSEE+F RKLHLYTLAPHSY+FVDLWADK Sbjct: 1 MPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMMRAEGSINKVFLISPTADSNSIYKAILTPEDKTWDLDKNAFQHIQEVVQECEADAAKYRHDLEYEIAYKKFVSGETISHVEENLLETGGFREIKPKRPSPALVLDDIQGSILMSQSARNPLVNLVLKSRHIGEGLGLSIFFMVQTLTGCPKPIRLNVTHWAIWKTHSTREQKLIYESLGGMMSEEEFQRKLHLYTLAPHSYLFVDLWADK 246
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A835YP98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP98_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.200e-40 Identity = 82/181 (45.30%), Postives = 116/181 (64.09%), Query Frame = 1 Query: 1 MPRKLLDLNVKFPGMPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPE-DKTWD-LDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLKEQ 537 MPRKL DL KFP + L S+YLSRVPTI A+ TG GK+F + LI+++R E SI +F+ISPTA SN+IY+AI PE D+ +D L F ++++ A Y L Y +A+++FV G+ +S +E LLE GG+R+I +RPS AL++DD Q S + S+ N NLVL+ + Sbjct: 1 MPRKLPDLLSKFPKIEPLTSRYLSRVPTICTAVGGTGSGKTFCLVALIKLMRREKSITHLFIISPTAHSNTIYRAIFDPETDQLFDDLGVKVFDTLRQIQDTMNGIADGYETQLRYALAFERFVRGEDVSTTDEQLLEEGGYRKIAVRRPSFALLIDDAQNSAIFSRHKNNGFPNLVLRSR 181
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A835YYT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT5_9STRA) HSP 1 Score: 144 bits (364), Expect = 3.920e-37 Identity = 75/180 (41.67%), Postives = 118/180 (65.56%), Query Frame = 1 Query: 4 PRKLLDLNVKFPGMPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTWDLDK----NAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLK 531 PR L D+ +P LES+YLSR+PTI + STG GK++ ++L+++LR EG+++ ++L+SPT SN +YK+++ E K K ++ ++ + + +A A ++R ++EY IA++K G ++ E NLLE GFR+I+P+RP PALV+DD QGS+L S S RN L LVL+ Sbjct: 116 PRALPDITAGLNMLPALESRYLSRLPTICGFVGSTGSGKTYLCLSLLKLLRREGTLDTVYLVSPTGASNVLYKSVIR-EGKDHVFTKPNSPQIWKDLEWIEGDVQAQADRWRDEMEYDIAHRKHTAGQTLNPHETNLLERFGFRKIVPRRPCPALVIDDAQGSLLFSPSPRNYLSQLVLR 294
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A835YZW4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW4_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.350e-36 Identity = 71/161 (44.10%), Postives = 107/161 (66.46%), Query Frame = 1 Query: 58 SKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTW-DLDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLKEQ 537 S+YLSR+P I + TG GKS+ LI++++ EG+I +F+ISPTA+SN++Y+ I+ +DK + D+ F+ ++E+V CEA A YR DLEY IA K+ G+ +++ +E LLE GF ++PKRPS L DD QGS + S+ +RN NLVL+ + Sbjct: 148 SRYLSRIPAIVTLVGHTGSGKSYLATALIQLMQREGTITHLFIISPTANSNTLYQNIVKTDDKLYSDIGPAVFKSLEEIVASCEAIADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGFMPVVPKRPSFCLFCDDCQGSAIFSRGSRNSFPNLVLRSR 308
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A835Z5J4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J4_9STRA) HSP 1 Score: 138 bits (347), Expect = 4.230e-36 Identity = 67/156 (42.95%), Postives = 102/156 (65.38%), Query Frame = 1 Query: 73 RVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTW-DLDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLKEQ 537 R+P I + TG GKS+ LI+M++ EG+I +F+ISPTA+SN++Y +L P+DK + D+ F+ ++E+V CEA A YR DLEY IA K+ G+ +++ +E LLE G+ ++PKRPS L DD QGS + S+ ++N NLVL+ + Sbjct: 1 RIPAIVTLVGHTGSGKSYLATALIQMMQREGTITHLFIISPTANSNTLYSNVLKPDDKVYSDIGPAVFKSLEEIVASCEAVADVYRKDLEYCIALAKYTSGEPVTYFDEALLEARGYMPVVPKRPSFCLFCDDCQGSAIFSRGSKNSFPNLVLRSR 156
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A835YL54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL54_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.430e-34 Identity = 83/259 (32.05%), Postives = 131/259 (50.58%), Query Frame = 1 Query: 1 MPRKLLDLNVKFPGMPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTWD-LDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVL--------------------------------------------KEQKLIYESLGGMMSEEDFLRKLHLYTLAPHSYMFVDL 642 M RK +DL + L S+ +SRVP + A+ TG GKS+ + LI+ ++ E +I ++F+ISPTA SN+IYK I+ D+ +D L + ++E+ C+++A Y H+L+ AY ++ G + + + LLE G+R++IPKRP+ A+ DD S L S S +NP N L KE + ++E++ +S +DF RKL L+TL H Y+F DL Sbjct: 1 MKRKDIDLLKDIAKVEPLTSRVVSRVPCLCIAVGHTGAGKSWKIVELIKRMQMERTITRLFIISPTAASNTIYKNIVREGDRVYDDLSPKIYASLEEIESVCKSEAYVYAHELKCAAAYLRYANGLPLDYPDTQLLEQIGWRQMIPKRPAFAVFADDCSHSALFSTSRKNPWSNFCLRCRHAGNGLGDSVFMVSQTMRSGVPKALRENATHFFYVGGSMNRKEVESMWETVSSFVSFDDFERKLRLFTLENHGYLFCDL 259
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A835Z465_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z465_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.320e-29 Identity = 77/214 (35.98%), Postives = 116/214 (54.21%), Query Frame = 1 Query: 94 ALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTW-DLDKNAFQHIQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPKRPSPALVLDDVQGSILMSQSARNPLVNLVLKEQKLIY-ESLGGMMSEEDF---------LRKLHLYTLAPHSYMFVDLWADKTKKARKKVVLVKKPKT 702 A GKS+ LI M++ EG+I +F+ISPTA+SN++Y IL P+DK + D+ N F+ + E+V CEA YR DLEY IA+ K+ G+ +++ +E LLE GF ++PKRPS L D QGS + S+ RN N VL+ + + + L +++ + L H HS + +D ++ RKK VK+ KT Sbjct: 104 AALRASSGKSYLATALIAMMQREGTITHLFIISPTANSNTLYSNILKPDDKVYSDIGPNVFKSLDEIVAACEAVGDAYRKDLEYAIAHAKYTNGELVTYFDEALLEQRGFMPVVPKRPSFCLFCDACQGSAIFSRGGRNTFPNCVLRSRHVAGGQGLSVILAAQTMRSGVPRALRLDSTHFILFNTHSRVELDEMYEEKVLYRKKKKAVKRKKT 317
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Match: A0A5C7LHA9_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A5C7LHA9_9SPIR) HSP 1 Score: 67.4 bits (163), Expect = 4.520e-9 Identity = 46/154 (29.87%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 82 TIFCALASTGGGKSFTTINLIRMLRAEGSINKIFLISPTADSNSIYKAILTPEDKTWDLDKNAFQH-IQEVVQECEADAAKYRHDLEYQIAYKKFVGGDRISHVEENLLETGGFREIIPK-RPSPALVLDDVQGSILMSQSARNPLVNLVLKEQ 537 T+ + S G GK+ L + GS K++LISPT +SN ++K + + D A Q I +++ + DA+ + Y+ A+ K+ + EE LL + + E P +PSP +++DD+ S L A NP +NLVL+ + Sbjct: 110 TLVGFVGSCGRGKTNAVYLLAKRYLDYGSFTKVYLISPTYESNMLWKQLPKLDKSDVYQDVAAAQAAIADILAKIAQDASVFEFHQLYKTAWDKWKANKELKPEEETLLNSMEYVEPQPVIQPSPLIIIDDMSNSPLFRTGASNPFINLVLRHR 263 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349115 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8415 ID=mRNA_8415|Name=jgi.p|Trimin1|349115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=840bp|location=Sequence derived from alignment at Contig_36:845056..846842+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCGCGCAAGCTGCTGGATCTGAACGTGAAATTTCCTGGCATGCCTCGback to top protein sequence of jgi.p|Trimin1|349115 >Trimin1|349115|estExt_Genemark1.C_Ctg_360089 ID=Trimin1|349115|estExt_Genemark1.C_Ctg_360089|Name=jgi.p|Trimin1|349115|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=280bp MPRKLLDLNVKFPGMPRLESKYLSRVPTIFCALASTGGGKSFTTINLIRMback to top mRNA from alignment at Contig_36:845056..846842+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8415 ID=mRNA_8415|Name=jgi.p|Trimin1|349115|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1787bp|location=Sequence derived from alignment at Contig_36:845056..846842+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_36:845056..846842+ >mRNA_8415 ID=mRNA_8415|Name=jgi.p|Trimin1|349115|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=840bp|location=Sequence derived from alignment at Contig_36:845056..846842+ (Tribonema minus UTEX_B_3156 )back to top |