mRNA_837 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157109
Unique NamemRNA_837
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: A0A835Z6C1_9STRA (HNHc domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.190e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 MLTLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK 222
            MLTLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK
Sbjct:    1 MLTLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK 74
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: C5WI97_STRDG (Putative endodeoxyribonuclease n=5 Tax=root TaxID=1 RepID=C5WI97_STRDG)

HSP 1 Score: 55.1 bits (131), Expect = 1.910e-7
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192
            +GY  A +Y+DN      +H+L AE F+  + ++K TVDHID NRKNN + NLR AT
Sbjct:   36 NGYLMADLYKDNKSEKVPIHRLVAEAFIP-NPENKATVDHIDGNRKNNSIDNLRWAT 91
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: F0YNE8_AURAN (AP2/ERF domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNE8_AURAN)

HSP 1 Score: 53.1 bits (126), Expect = 7.740e-7
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   16 DASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQVIYQEK 222
            D  GY + ++ +  V+    VH+L A  F++ +TD+K  VDHID +R NN++SNLR ATK E    Q K
Sbjct:   33 DKDGYLQVNLSKSGVRKTVRVHRLVALAFIE-NTDNKPFVDHIDRDRTNNNISNLRWATKSENQANQTK 100
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: C5WGV2_STRDG (Putative endodeoxyribonuclease n=1 Tax=Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124) TaxID=486410 RepID=C5WGV2_STRDG)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   10 LQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192
            +   +GY    +Y++N      +H+L AE F+Q + ++K TVDHID NR+NN +SNLR AT
Sbjct:   32 INKGNGYLIVDLYQNNRAEKVPIHRLVAEAFIQ-NPENKATVDHIDGNRRNNSISNLRWAT 91
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: U2VYH7_STRPY (HNHc domain-containing protein n=6 Tax=root TaxID=1 RepID=U2VYH7_STRPY)

HSP 1 Score: 51.2 bits (121), Expect = 5.410e-6
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192
            +GY    +Y+DN      +H+L AE F+  + ++K TVDHID +RKNN ++NLR AT
Sbjct:   36 NGYLIVDLYKDNKSEKVPIHRLVAEAFIP-NLENKATVDHIDGDRKNNSINNLRWAT 91
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: A0A847D594_9LACT (HNH endonuclease n=1 Tax=Trichococcus flocculiformis TaxID=82803 RepID=A0A847D594_9LACT)

HSP 1 Score: 51.2 bits (121), Expect = 5.410e-6
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    7 TLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQ 204
            TL   +GY    +Y+ N +    VH+L AE F+  + ++K TVDHID NR NN + NLR AT  EQ
Sbjct:   32 TLNKRNGYLVLDLYQGNKREKVPVHRLVAEAFIP-NPENKLTVDHIDGNRDNNSIGNLRWATYGEQ 96
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: UPI000E3EB696 (HNH endonuclease n=1 Tax=Streptococcus sp. LQJ-218 TaxID=2283190 RepID=UPI000E3EB696)

HSP 1 Score: 50.8 bits (120), Expect = 7.630e-6
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192
            +GY    +Y++N      +H+L AE F+  + ++K TVDHID NRKNN ++NLR AT
Sbjct:   36 NGYLIVDLYKNNKSEKVPIHRLVAETFIP-NPENKLTVDHIDGNRKNNSINNLRWAT 91
[Close]
BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: A0A3S6QAE1_9CAUD (HNH endonuclease n=1 Tax=Lactobacillus phage Lpa804 TaxID=2059850 RepID=A0A3S6QAE1_9CAUD)

HSP 1 Score: 50.1 bits (118), Expect = 1.390e-5
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    4 LTLQDASG-YWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMATKREQ 204
            + LQD +G Y   ++Y++ V     VH+  A  F+  + D K+TVDHID N+ NN VSNLR A K EQ
Sbjct:   54 ILLQDTTGRYHMVTLYKNGVAKNVTVHRQVAIAFID-NPDSKETVDHIDRNKDNNRVSNLRWANKLEQ 120
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BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: UPI00064324AB (HNH endonuclease n=1 Tax=Enterococcus cecorum TaxID=44008 RepID=UPI00064324AB)

HSP 1 Score: 50.1 bits (118), Expect = 1.470e-5
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192
            + Y    +Y +N      +H+L AE F+  + ++K TVDHID NR+NND+SNLR AT
Sbjct:   36 NNYLMVDLYENNQPKKVPIHRLIAEAFIP-NPENKATVDHIDGNRQNNDISNLRWAT 91
[Close]
BLAST of jgi.p|Trimin1|157109 vs. uniprot
Match: UPI002005EB74 (HNH endonuclease n=2 Tax=Lactobacillales TaxID=186826 RepID=UPI002005EB74)

HSP 1 Score: 50.1 bits (118), Expect = 1.470e-5
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   22 SGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDTNRKNNDVSNLRMAT 192
            +GY    +Y++N      +H+L AE F+  + + K TVDHID +RKNN +SNLR AT
Sbjct:   36 NGYLMVDLYQNNKSEKVPIHRLVAEAFIP-NPEKKATVDHIDGDRKNNSISNLRWAT 91
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157109 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A835Z6C1_9STRA1.190e-44100.00HNHc domain-containing protein (Fragment) n=1 Tax=... [more]
C5WI97_STRDG1.910e-749.12Putative endodeoxyribonuclease n=5 Tax=root TaxID=... [more]
F0YNE8_AURAN7.740e-743.48AP2/ERF domain-containing protein n=1 Tax=Aureococ... [more]
C5WGV2_STRDG1.420e-644.26Putative endodeoxyribonuclease n=1 Tax=Streptococc... [more]
U2VYH7_STRPY5.410e-645.61HNHc domain-containing protein n=6 Tax=root TaxID=... [more]
A0A847D594_9LACT5.410e-645.45HNH endonuclease n=1 Tax=Trichococcus flocculiform... [more]
UPI000E3EB6967.630e-645.61HNH endonuclease n=1 Tax=Streptococcus sp. LQJ-218... [more]
A0A3S6QAE1_9CAUD1.390e-545.59HNH endonuclease n=1 Tax=Lactobacillus phage Lpa80... [more]
UPI00064324AB1.470e-545.61HNH endonuclease n=1 Tax=Enterococcus cecorum TaxI... [more]
UPI002005EB741.470e-545.61HNH endonuclease n=2 Tax=Lactobacillales TaxID=186... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1558619..1558840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157109|e_gw1.2.365.1
DescriptionHNH endonuclease
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E552@1|root,2SBZD@2759|Eukaryota
Evalue1.27e-07
Seed ortholog44056.XP_009041934.1
Hectar predicted targeting categoryother localisation
TranscriptId157431
TrackFilteredModels1
ProteinId157109
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157109gene_837Tribonema minus UTEX_B_3156 geneContig_2 1558619..1558840 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_837_1exon_837_1Tribonema minus UTEX_B_3156 exonContig_2 1558619..1558840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_837CDS_837Tribonema minus UTEX_B_3156 CDSContig_2 1558619..1558840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157109Trimin1|157109|e_gw1.2.365.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1558619..1558840 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_837 ID=mRNA_837|Name=jgi.p|Trimin1|157109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_2:1558619..1558840- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGACATTGCAGGACGCATCCGGGTATTGGAGAGCGTCGATGTACAG
AGACAACGTCAAATTTGCTACAATGGTCCATCAGTTGGCAGCTGAAGAGT
TTCTCCAATTGGATACTGATGACAAAAAGACTGTCGATCACATTGATACT
AATCGAAAGAACAACGACGTCAGCAATTTAAGGATGGCAACAAAACGCGA
ACAGGTGATATACCAAGAAAAA
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protein sequence of jgi.p|Trimin1|157109

>Trimin1|157109|e_gw1.2.365.1 ID=Trimin1|157109|e_gw1.2.365.1|Name=jgi.p|Trimin1|157109|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
MLTLQDASGYWRASMYRDNVKFATMVHQLAAEEFLQLDTDDKKTVDHIDT
NRKNNDVSNLRMATKREQVIYQEK
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mRNA from alignment at Contig_2:1558619..1558840-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_837 ID=mRNA_837|Name=jgi.p|Trimin1|157109|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_2:1558619..1558840- (Tribonema minus UTEX_B_3156 )
ATGTTGACATTGCAGGACGCATCCGGGTATTGGAGAGCGTCGATGTACAG
AGACAACGTCAAATTTGCTACAATGGTCCATCAGTTGGCAGCTGAAGAGT
TTCTCCAATTGGATACTGATGACAAAAAGACTGTCGATCACATTGATACT
AATCGAAAGAACAACGACGTCAGCAATTTAAGGATGGCAACAAAACGCGA
ACAGGTGATATACCAAGAAAAA
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Coding sequence (CDS) from alignment at Contig_2:1558619..1558840-

>mRNA_837 ID=mRNA_837|Name=jgi.p|Trimin1|157109|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_2:1558619..1558840- (Tribonema minus UTEX_B_3156 )
ATGTTGACATTGCAGGACGCATCCGGGTATTGGAGAGCGTCGATGTACAG
AGACAACGTCAAATTTGCTACAATGGTCCATCAGTTGGCAGCTGAAGAGT
TTCTCCAATTGGATACTGATGACAAAAAGACTGTCGATCACATTGATACT
AATCGAAAGAACAACGACGTCAGCAATTTAAGGATGGCAACAAAACGCGA
ACAGGTGATATACCAAGAAAAA
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