mRNA_8340 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165252
Unique NamemRNA_8340
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A836CDJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ9_9STRA)

HSP 1 Score: 706 bits (1821), Expect = 1.020e-257
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1 
Query:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRKLMMFGNIEFEALHPRCKCWQRTHI 981
            MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRKLMMFGNIEFEALHPRCKCWQRTHI
Sbjct:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRKLMMFGNIEFEALHPRCKCWQRTHI 327
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835Z6H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H5_9STRA)

HSP 1 Score: 527 bits (1358), Expect = 1.150e-186
Identity = 242/303 (79.87%), Postives = 270/303 (89.11%), Query Frame = 1 
Query:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRK 909
            M SRY+ NQH+EWLHLNTFGDRPCARSG S+VVV  KIYVFGGCDGV  YNDLH FDTV HEWSV+H+EGGPTPRAAFGMCAGPG EDFTIACGSNTQ+MSA++  W ++TRRR WT++FESPKALYGVSICW+G +LLMYAGTTGS+Y NHLYAFD R +GV KVST+G CPSRRYKHES +V+D MY+ GGG FAPTE CM+I++L+LRSL W+QV V+ DTS  RTA SCCVDPETLKVWVFGGFDADNTR+QAFQNYDLTSNEW VVQTVCSPDARAFHS+IY QGSLYLMLGANGKRK
Sbjct:    1 MRSRYLWNQHQEWLHLNTFGDRPCARSGHSAVVVGGKIYVFGGCDGVAVYNDLHRFDTVTHEWSVIHAEGGPTPRAAFGMCAGPGEEDFTIACGSNTQHMSAFADIWRFNTRRRAWTKMFESPKALYGVSICWYGRMLLMYAGTTGSKYSNHLYAFDARTSGVAKVSTTGVCPSRRYKHESFVVNDDMYVFGGGCFAPTEGCMFISRLDLRSLEWKQVDVEGDTSVARTAVSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKRK 303
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835ZA21_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA21_9STRA)

HSP 1 Score: 508 bits (1309), Expect = 3.970e-179
Identity = 233/303 (76.90%), Postives = 267/303 (88.12%), Query Frame = 1 
Query:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRK 909
            M S+ +LN+HREW+ LNTFGD PCARSG ++VVVR KIYVFGGCDGVV YNDLH FDT  HEWS +HSEGGPTPRAAFGMCAGPG +DFTIACGS+TQYMSA+S  WS++TRRR WT+LFESPKALYGVSICW+G +LLMYAGTTG EYCNHLYAFD   + VVKVST+G CPSRRYKHES I+DD MY+ GGG FAPTE CM+I++LNLRSL W+QV+VQNDTS PRTAFSCC+DPETLKVWVFGGFDADNTR+QAFQ YD+   +W+ V +VCSP +RAFHS+IY+QGSL+LMLGANGKRK
Sbjct:    1 MYSKSLLNRHREWVLLNTFGDPPCARSGHAAVVVRGKIYVFGGCDGVVVYNDLHWFDTATHEWSAIHSEGGPTPRAAFGMCAGPGEDDFTIACGSDTQYMSAFSDIWSFNTRRRTWTKLFESPKALYGVSICWYGRMLLMYAGTTGLEYCNHLYAFDSLTSSVVKVSTTGVCPSRRYKHESFILDDDMYVFGGGCFAPTEGCMFISRLNLRSLEWKQVQVQNDTSIPRTAFSCCMDPETLKVWVFGGFDADNTRLQAFQCYDMQLRKWENVASVCSPPSRAFHSMIYSQGSLFLMLGANGKRK 303
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835Z2J9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J9_9STRA)

HSP 1 Score: 481 bits (1237), Expect = 3.400e-167
Identity = 220/283 (77.74%), Postives = 249/283 (87.99%), Query Frame = 1 
Query:   61 DRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRK 909
            DRPCARSGQS+V+V DKIYVFGGCDGVV YNDLHCFDTV HEW V+HSEGGPTPRAAFGMC GPG EDFTIACGSNTQ+MSAYS  WS++TR R WT+LFESPKALYGVSICW+G ILLMYAGTTG EYCNHLYAF+   + VVKVST+G CPSRRYKHES I++D MY+ GGG FAPTE CM+I++LNLRSL W+Q+ V  DTS  RTAFSCC DPETLKVWVFGGFDADNTR+QAFQ+YD+ S +W+ V +VCSP +RAFHS+IY+QGSL+LMLGANGKRK
Sbjct:   85 DRPCARSGQSAVLVGDKIYVFGGCDGVVVYNDLHCFDTVTHEWRVVHSEGGPTPRAAFGMCVGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTKLFESPKALYGVSICWYGRILLMYAGTTGLEYCNHLYAFNSLASSVVKVSTTGICPSRRYKHESFILNDNMYVFGGGCFAPTEGCMFISRLNLRSLEWKQLHVDGDTSVARTAFSCCADPETLKVWVFGGFDADNTRLQAFQSYDMQSRKWENVASVCSPPSRAFHSMIYSQGSLFLMLGANGKRK 367
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835Z6E7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E7_9STRA)

HSP 1 Score: 417 bits (1072), Expect = 1.460e-144
Identity = 193/267 (72.28%), Postives = 223/267 (83.52%), Query Frame = 1 
Query:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNE 801
            M S+ +LN+HREW+ LNTFG+ PCARSG ++V+VR KIYVFGGCDG V YNDLHCFDTV HEW V+ SEG PTPRAAFGMCAGPG EDFTIACGSNTQ+MSAYS  WS++TR R WT+LFESPKALYGVSICW+G +LLMYAGT G EYCNHLYAF    + V+KVST+G CPS  YKHES  V+D MY+ GGG FAPTE  M+I+ L+LRSL W+QV+VQNDTS PRTAFS CV PET KVWVFGGFDADNT +Q+FQ+YD+ S +
Sbjct:    1 MYSKCLLNRHREWVLLNTFGNPPCARSGHAAVIVRGKIYVFGGCDGDVVYNDLHCFDTVTHEWRVIMSEGAPTPRAAFGMCAGPGDEDFTIACGSNTQFMSAYSDVWSFNTRHRTWTQLFESPKALYGVSICWYGRMLLMYAGTAGLEYCNHLYAFHSLTSSVIKVSTTGVCPSIWYKHESFAVNDDMYVFGGGCFAPTEGRMFISWLDLRSLEWKQVQVQNDTSIPRTAFSSCVGPETSKVWVFGGFDADNTCLQSFQSYDMLSRK 267
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835YR08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR08_9STRA)

HSP 1 Score: 356 bits (914), Expect = 7.350e-121
Identity = 167/177 (94.35%), Postives = 170/177 (96.05%), Query Frame = 1 
Query:  379 YGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRK 909
            YGVSICWHGHILLMYAGTTGSEY NHLYAFD R AGVVKVSTSGSCPSRRYKHES IVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDP TLKVWVFGGFD DNTR+QAFQNYDLTSNEW+VVQTVCSPDARAFHS+IY QGSLYLMLGANGKRK
Sbjct:   13 YGVSICWHGHILLMYAGTTGSEYSNHLYAFDSRTAGVVKVSTSGSCPSRRYKHESFIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPGTLKVWVFGGFDVDNTRLQAFQNYDLTSNEWEVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKRK 189
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835YN69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN69_9STRA)

HSP 1 Score: 344 bits (883), Expect = 3.220e-114
Identity = 157/301 (52.16%), Postives = 201/301 (66.78%), Query Frame = 1 
Query:    4 CSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKR 906
            CSR  L  H EW  LNT GD PCARSGQ +VVV D +Y+FGGCDG    ND+  F     EW  +  + GP+ R +FG+C GPG ED T+ACG N     A +  WS++ R R WT+ F+SP+ALYGVS+CW+   LLMY G+TG  Y + LYAF L+   V K+ TSG  PS RYK E  +VD+ +Y+ GGG+FAP    M + +LNL SL W  ++ +ND STPR AFSCCVD ET K W+FGGF   N R+QAFQ +D+  N W  VQT+CSP  RAFHS++  +GSL L+LG++G +
Sbjct:    5 CSRCELESHNEWRQLNTVGDAPCARSGQGAVVVDDVVYIFGGCDGEAVSNDIRAFYIHTSEWQKITHQLGPSARTSFGICLGPGVEDVTVACGCNLDTPGALADIWSFNVRHRTWTKRFDSPRALYGVSVCWNDDNLLMYGGSTGVAYSDTLYAFSLKTGNVAKIKTSGEGPSERYKQEMFVVDENLYMCGGGAFAPAAGRMQMFKLNLTSLSWHVLEAENDISTPRAAFSCCVDSETSKAWIFGGFSVHNNRLQAFQTFDIQRNVWNDVQTLCSPPPRAFHSMVLCKGSLLLLLGSDGDK 305
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A836CD99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD99_9STRA)

HSP 1 Score: 327 bits (838), Expect = 1.120e-107
Identity = 157/304 (51.64%), Postives = 205/304 (67.43%), Query Frame = 1 
Query:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYCNHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTESCMYINQLNLRSLVWQQVKVQND-TSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTV---CSPDARAFHSVIYAQGSLYLMLGANG 900
            M S    + H  WL L TFGD P  RSGQ + VV   +Y+FGGCD V+  ND++ FD   HEW  +  + GP+PRAAFGMC+GPG  DFT+ACG      SA S  WS+D RRR+W +LFESP+A YGVSICWHG  LL++ GT+G EY   LYAF L    +V+V+TSG  PS+RYKH S +  + MY+ GGG+F+PTE  M +++LNL +LVWQ++    +  S  RTA +CC D E+ K WVFGGFD+D  R+QAFQ +D+ SN W  V  V    SP  RAFHS++  +G+L++ LGA+G
Sbjct:    1 MLSAKPQHSHHRWLRLRTFGDVPTLRSGQGAAVVAGSVYIFGGCDAVMQ-NDIYRFDVDTHEWCAVTCDDGPSPRAAFGMCSGPGQYDFTVACGCGLGERSAQSDIWSFDVRRRRWRKLFESPRAAYGVSICWHGSTLLLWGGTSGVEYYASLYAFTLHTGSIVRVNTSGCGPSKRYKHVSFVYGNDMYVCGGGTFSPTERSMGMHKLNLTTLVWQRLGDDREGVSIGRTACTCCFDVESSKAWVFGGFDSDAKRLQAFQTFDVVSNAWAEVGGVKAETSPAPRAFHSMVLCRGALFMFLGADG 303
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835YYR4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR4_9STRA)

HSP 1 Score: 266 bits (679), Expect = 1.140e-86
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 1 
Query:    1 MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGS 441
            M S+ IL +H+EW+HL T+GDRPCARSGQS+V+VRDKIYVFGGCDGVV YNDLHC DTV HEWSV+HS+GGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSA+S  WSYDTR R WT++FE+PKALYGVSICWH   LLMYAGTTG+
Sbjct:    1 MYSKCILIRHQEWVHLGTYGDRPCARSGQSAVLVRDKIYVFGGCDGVVVYNDLHCLDTVTHEWSVIHSKGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAFSDIWSYDTRHRTWTKMFEAPKALYGVSICWHDRTLLMYAGTTGA 147
[Close]
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Match: A0A835YQY7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQY7_9STRA)

HSP 1 Score: 233 bits (595), Expect = 2.100e-74
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1 
Query:   37 WLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDYNDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSYGWSYDTRRRKWTELFESPKALY 381
            WLHL+TFGDRPCARSGQSSVVV+DKIYVFGGCDGV+ YNDLHCFDT  HEWSV+HSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYS  WSYDTRRR+WTELFESPKALY
Sbjct:    1 WLHLHTFGDRPCARSGQSSVVVKDKIYVFGGCDGVIVYNDLHCFDTATHEWSVIHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYMSAYSDVWSYDTRRRQWTELFESPKALY 115
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165252 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CDJ9_9STRA1.020e-257100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6H5_9STRA1.150e-18679.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA21_9STRA3.970e-17976.90Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z2J9_9STRA3.400e-16777.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6E7_9STRA1.460e-14472.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YR08_9STRA7.350e-12194.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN69_9STRA3.220e-11452.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD99_9STRA1.120e-10751.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYR4_9STRA1.140e-8680.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQY7_9STRA2.100e-7491.30Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_36contigContig_36:16120..17103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165252|e_gw1.36.84.1
BRITEko00000,ko04131
KEGG koko:K20285
Descriptionnitrile biosynthetic process
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Evalue5.03e-67
Seed ortholog2880.D7FP90
Hectar predicted targeting categoryother localisation
TranscriptId165574
TrackFilteredModels1
ProteinId165252
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165252gene_8340Tribonema minus UTEX_B_3156 geneContig_36 16120..17103 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8340_1exon_8340_1Tribonema minus UTEX_B_3156 exonContig_36 16120..17103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8340CDS_8340Tribonema minus UTEX_B_3156 CDSContig_36 16120..17103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165252Trimin1|165252|e_gw1.36.84.1Tribonema minus UTEX_B_3156 polypeptideContig_36 16120..17103 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8340 ID=mRNA_8340|Name=jgi.p|Trimin1|165252|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_36:16120..17103- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCCAGGTACATATTGAACCAACATCGAGAGTGGCTGCACCTCAA
TACCTTTGGTGACCGTCCGTGTGCAAGAAGTGGCCAGTCTTCAGTAGTCG
TCAGGGATAAAATCTATGTGTTTGGCGGCTGCGACGGTGTTGTGGATTAC
AATGACCTGCATTGTTTCGACACGGTCATGCATGAGTGGAGTGTGATGCA
TTCAGAGGGTGGGCCAACGCCACGTGCTGCATTTGGCATGTGTGCAGGGC
CTGGTGCGGAGGACTTTACGATCGCATGCGGTAGCAATACGCAATACATG
AGCGCATATTCATATGGTTGGTCGTATGACACACGGCGTCGTAAGTGGAC
TGAGCTCTTTGAGTCGCCAAAAGCTCTATATGGTGTTTCGATCTGCTGGC
ATGGTCATATACTGCTCATGTACGCAGGCACAACGGGGTCAGAGTACTGT
AACCACTTGTACGCATTTGATTTGAGAATTGCTGGTGTTGTAAAGGTCAG
TACATCAGGATCATGCCCCTCTAGAAGATACAAGCATGAAAGCGTTATTG
TAGACGACTGCATGTACATCCTAGGCGGTGGCTCCTTCGCACCTACTGAA
AGTTGCATGTATATAAACCAGCTCAATTTGAGATCACTGGTGTGGCAGCA
GGTGAAAGTGCAAAATGACACTTCTACCCCGAGGACAGCCTTCAGTTGTT
GTGTGGACCCCGAAACATTGAAAGTTTGGGTGTTTGGCGGCTTTGATGCT
GACAACACTCGCATACAAGCCTTTCAAAACTATGACTTGACATCAAATGA
GTGGAAGGTTGTGCAGACTGTATGCAGTCCAGACGCCCGTGCCTTTCATT
CCGTGATATACGCCCAGGGTTCCTTGTACCTAATGCTCGGTGCAAACGGC
AAGAGAAAATTAATGATGTTTGGCAATATCGAATTTGAAGCACTCCACCC
ACGCTGCAAATGCTGGCAGCGTACGCATATTTGA
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protein sequence of jgi.p|Trimin1|165252

>Trimin1|165252|e_gw1.36.84.1 ID=Trimin1|165252|e_gw1.36.84.1|Name=jgi.p|Trimin1|165252|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MCSRYILNQHREWLHLNTFGDRPCARSGQSSVVVRDKIYVFGGCDGVVDY
NDLHCFDTVMHEWSVMHSEGGPTPRAAFGMCAGPGAEDFTIACGSNTQYM
SAYSYGWSYDTRRRKWTELFESPKALYGVSICWHGHILLMYAGTTGSEYC
NHLYAFDLRIAGVVKVSTSGSCPSRRYKHESVIVDDCMYILGGGSFAPTE
SCMYINQLNLRSLVWQQVKVQNDTSTPRTAFSCCVDPETLKVWVFGGFDA
DNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANG
KRKLMMFGNIEFEALHPRCKCWQRTHI*
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mRNA from alignment at Contig_36:16120..17103-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8340 ID=mRNA_8340|Name=jgi.p|Trimin1|165252|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_36:16120..17103- (Tribonema minus UTEX_B_3156 )
ATGTGCTCCAGGTACATATTGAACCAACATCGAGAGTGGCTGCACCTCAA
TACCTTTGGTGACCGTCCGTGTGCAAGAAGTGGCCAGTCTTCAGTAGTCG
TCAGGGATAAAATCTATGTGTTTGGCGGCTGCGACGGTGTTGTGGATTAC
AATGACCTGCATTGTTTCGACACGGTCATGCATGAGTGGAGTGTGATGCA
TTCAGAGGGTGGGCCAACGCCACGTGCTGCATTTGGCATGTGTGCAGGGC
CTGGTGCGGAGGACTTTACGATCGCATGCGGTAGCAATACGCAATACATG
AGCGCATATTCATATGGTTGGTCGTATGACACACGGCGTCGTAAGTGGAC
TGAGCTCTTTGAGTCGCCAAAAGCTCTATATGGTGTTTCGATCTGCTGGC
ATGGTCATATACTGCTCATGTACGCAGGCACAACGGGGTCAGAGTACTGT
AACCACTTGTACGCATTTGATTTGAGAATTGCTGGTGTTGTAAAGGTCAG
TACATCAGGATCATGCCCCTCTAGAAGATACAAGCATGAAAGCGTTATTG
TAGACGACTGCATGTACATCCTAGGCGGTGGCTCCTTCGCACCTACTGAA
AGTTGCATGTATATAAACCAGCTCAATTTGAGATCACTGGTGTGGCAGCA
GGTGAAAGTGCAAAATGACACTTCTACCCCGAGGACAGCCTTCAGTTGTT
GTGTGGACCCCGAAACATTGAAAGTTTGGGTGTTTGGCGGCTTTGATGCT
GACAACACTCGCATACAAGCCTTTCAAAACTATGACTTGACATCAAATGA
GTGGAAGGTTGTGCAGACTGTATGCAGTCCAGACGCCCGTGCCTTTCATT
CCGTGATATACGCCCAGGGTTCCTTGTACCTAATGCTCGGTGCAAACGGC
AAGAGAAAATTAATGATGTTTGGCAATATCGAATTTGAAGCACTCCACCC
ACGCTGCAAATGCTGGCAGCGTACGCATATTTGA
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Coding sequence (CDS) from alignment at Contig_36:16120..17103-

>mRNA_8340 ID=mRNA_8340|Name=jgi.p|Trimin1|165252|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_36:16120..17103- (Tribonema minus UTEX_B_3156 )
ATGTGCTCCAGGTACATATTGAACCAACATCGAGAGTGGCTGCACCTCAA
TACCTTTGGTGACCGTCCGTGTGCAAGAAGTGGCCAGTCTTCAGTAGTCG
TCAGGGATAAAATCTATGTGTTTGGCGGCTGCGACGGTGTTGTGGATTAC
AATGACCTGCATTGTTTCGACACGGTCATGCATGAGTGGAGTGTGATGCA
TTCAGAGGGTGGGCCAACGCCACGTGCTGCATTTGGCATGTGTGCAGGGC
CTGGTGCGGAGGACTTTACGATCGCATGCGGTAGCAATACGCAATACATG
AGCGCATATTCATATGGTTGGTCGTATGACACACGGCGTCGTAAGTGGAC
TGAGCTCTTTGAGTCGCCAAAAGCTCTATATGGTGTTTCGATCTGCTGGC
ATGGTCATATACTGCTCATGTACGCAGGCACAACGGGGTCAGAGTACTGT
AACCACTTGTACGCATTTGATTTGAGAATTGCTGGTGTTGTAAAGGTCAG
TACATCAGGATCATGCCCCTCTAGAAGATACAAGCATGAAAGCGTTATTG
TAGACGACTGCATGTACATCCTAGGCGGTGGCTCCTTCGCACCTACTGAA
AGTTGCATGTATATAAACCAGCTCAATTTGAGATCACTGGTGTGGCAGCA
GGTGAAAGTGCAAAATGACACTTCTACCCCGAGGACAGCCTTCAGTTGTT
GTGTGGACCCCGAAACATTGAAAGTTTGGGTGTTTGGCGGCTTTGATGCT
GACAACACTCGCATACAAGCCTTTCAAAACTATGACTTGACATCAAATGA
GTGGAAGGTTGTGCAGACTGTATGCAGTCCAGACGCCCGTGCCTTTCATT
CCGTGATATACGCCCAGGGTTCCTTGTACCTAATGCTCGGTGCAAACGGC
AAGAGAAAATTAATGATGTTTGGCAATATCGAATTTGAAGCACTCCACCC
ACGCTGCAAATGCTGGCAGCGTACGCATATTTGA
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