mRNA_8311 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349032
Unique NamemRNA_8311
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: A0A835YY09_9STRA (Nucleoside phosphorylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY09_9STRA)

HSP 1 Score: 476 bits (1226), Expect = 3.610e-170
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL
Sbjct:    1 MEAEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 233          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: A0A6H5JA26_9PHAE (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA26_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 7.460e-89
Identity = 138/233 (59.23%), Postives = 171/233 (73.39%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEA PLI+ L L  D   FPA+AP KC++    G  ++VVTNGKC R GVD VGTVA GL+ WLS+E  KPDLVINAGTAGGF +   AIGDVF+S+   NHDRRI IPG+ E+G+G  ++ PT ++   LG+K GVV+T +S D  + D K M  N+A VKDME AAVAWACEQH  TP FCIKVVTD+VDG     EEFL+NL AA+ SLQ+A+P+ LDFV+ ++L+EL
Sbjct:   98 MEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQVGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVSTGSSFDHTKTDDKMMEENDARVKDMEAAAVAWACEQHG-TPLFCIKVVTDLVDGGGVGEEEFLQNLKAASDSLQQAMPRVLDFVLSRQLAEL 329          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: D8LCX1_ECTSI (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX1_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 1.200e-88
Identity = 136/231 (58.87%), Postives = 167/231 (72.29%), Query Frame = 1
Query:    7 AEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            AEA PLI+ L L  D   FPA+AP KC++    G  ++VVTNGKC R GVD +GTVA GL+ WLS+E  KPD+VINAGTAGGF +   AIGDVF+S+   NHDRRI IPG+ E+G+G  ++ P  ++   LG+K GVVTT +S D  E D K M  N+A VKDME AAVAWACEQH  TP FCIKVVTD+VDG     EEFL+NL AA+ SLQEA+P+ LDFV+ +RL +L
Sbjct:   18 AEACPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDIVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPAPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHG-TPLFCIKVVTDLVDGGGVGEEEFLQNLKAASDSLQEAMPRVLDFVLARRLDDL 247          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: I0YN20_COCSC (Purine and uridine phosphorylase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YN20_COCSC)

HSP 1 Score: 246 bits (628), Expect = 3.910e-79
Identity = 127/234 (54.27%), Postives = 163/234 (69.66%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELD-EAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEA PL++ L L+ D        AP   YT E+ G T+HVV NGKC+ HGVD+VGTV   + A+L++ +FKPDLVI+ GTAGGF   GAAIGDVF+++   NHDRRI IPG+ ++GV + DAVP   LR AL  K GVV++ NSLD+ +ED   + ANEA+VK+ME A ++W    HN  PF  +K +TDIVDGDRP  EEFLENL AAA++LQ  +   L+FV GK + EL
Sbjct:    1 MEAEALPLVNILDLKEDVPPRIAPPAPAVSYTGEKFGITVHVVRNGKCQLHGVDNVGTVPAAVTAYLAVHEFKPDLVISVGTAGGFKARGAAIGDVFLATAFANHDRRIPIPGFDKYGVWRIDAVPAPNLREALSLKEGVVSSGNSLDYSKEDWDQLHANEAAVKEMEAAGISWVAHLHN-VPFLALKSITDIVDGDRPPQEEFLENLHAAAQALQRVISPVLEFVAGKSVKEL 233          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: A0A7S2V4K5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4K5_9STRA)

HSP 1 Score: 246 bits (629), Expect = 9.780e-79
Identity = 134/247 (54.25%), Postives = 166/247 (67.21%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELDEAAFPAS--------------APCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEA PL++HL L   E     S               P   Y  E N   + VVTNGK  ++GVD+VGTV  GL  +LS+    PD+VINAGT GGF   GA +GDVF+SS   NHDRRIAIPG++EWG+G   AVPT  L   LGYK GVVTT NSLD + +D + M AN+ASVKDMEGAA+A   E +N TP F +KVVTD+VDGD+PT +EFL+NL AAA SL+EA+PK +DFV+ K +++L
Sbjct:   27 MEAEAAPLVEHLGLTKCECNGDESNGDGGQSANILSGPMPAVVYEGEVNECKIFVVTNGKDPKYGVDNVGTVCAGLVTYLSLLAISPDIVINAGTCGGFISKGAQVGDVFISSAFKNHDRRIAIPGFSEWGIGDYAAVPTPNLVKELGYKTGVVTTGNSLDHVPKDDEIMAANDASVKDMEGAAIAAVAEMYN-TPCFGVKVVTDLVDGDKPTEDEFLQNLSAAANSLKEAMPKVIDFVLNKPIADL 272          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: E1ZMX0_CHLVA (PNP_UDP_1 domain-containing protein (Fragment) n=2 Tax=Chlorella TaxID=3071 RepID=E1ZMX0_CHLVA)

HSP 1 Score: 244 bits (623), Expect = 2.320e-78
Identity = 127/234 (54.27%), Postives = 161/234 (68.80%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELDEA-AFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEA P++  L L+ D+    P  APC  ++ E  G  +HVV  GKC+  GVD+VGTV   L  +L+I+ FKPD+   AGTAGGF    AAI DVFVS+  VNHDRRI IPG+ ++GVG  DAVPT  L+ AL  K GVVT+ NSLD+  ED   M+ +EA+VK+ME AAVAW+ +     P FCIK VTDIVDG+RP HEEFLENL  AA +LQ  +P+ ++F+ GK +SEL
Sbjct:    2 MEAEAMPMVKALGLQPDDPPVVPPPAPCHSFSGEHGGAQVHVVCFGKCKATGVDNVGTVPAALTTYLAIQAFKPDIQPRAGTAGGFRSRSAAIADVFVSTGMVNHDRRIPIPGFEKYGVGAFDAVPTPHLQKALNLKSGVVTSGNSLDYTAEDMARMVQHEAAVKEMEAAAVAWSADLFG-CPVFCIKSVTDIVDGERPAHEEFLENLHKAADALQHVVPQVIEFIAGKHVSEL 234          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: A0A1D1ZX64_AUXPR (PNP_UDP_1 domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX64_AUXPR)

HSP 1 Score: 245 bits (626), Expect = 3.370e-78
Identity = 126/234 (53.85%), Postives = 161/234 (68.80%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELDEA-AFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEA PLI  L L  D     P  APC  ++    G  +HVV NGKC +HGVD+VGTV   L A+L+++ F PDLVI+ GTAGGF   GAAIGDVF+S+ TVNHDRRI IPG+ ++G+G   A+PT QL+ ALG K G+V++ NSLD++E D + M  ++ SVK+ME AA+AW+       P F +K +TDIVDG RP  +EFLENL  AA SLQ+ LP+ L +V GKR  EL
Sbjct:   46 MEAEAAPLIQALGLVQDTPRVIPEPAPCVSFSGSHAGAHVHVVVNGKCGKHGVDNVGTVPAALTAYLALQAFDPDLVISTGTAGGFGAQGAAIGDVFLSTATVNHDRRIPIPGFDQYGLGLHAALPTPQLQAALGLKAGLVSSGNSLDYVERDMEIMREHDTSVKEMEAAAIAWSASLFG-VPMFSVKAITDIVDGKRPAQDEFLENLATAAASLQQVLPQVLHYVSGKRYREL 278          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: A0A7S0S4A1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4A1_9CHLO)

HSP 1 Score: 243 bits (619), Expect = 2.250e-77
Identity = 126/234 (53.85%), Postives = 160/234 (68.38%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELDEAAFPAS-APCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEAQPLI  L L  D+       APC  Y+       +HVV NG+C  HGVD+VGTV   L+ +L+++ FKPDLVI+AGTAGGF   GA+IGD+FVS+  VNHDRRI +P + ++G+GK   +PT  +  +LG K GVVT+ NSLD+ ++    M  +EA+VK+ME AA+AW       TP  C+K VTDIVDG RPT EEFLENLGAAA +LQ  LPK L+FV GK L+ L
Sbjct:   29 MEAEAQPLITRLGLVKDDPPKVLQPAPCVTYSGSLGSLAVHVVWNGRCGTHGVDNVGTVPAALSTYLAVQAFKPDLVISAGTAGGFKSQGASIGDIFVSTHVVNHDRRIPLPSFDQYGLGKASTLPTPNMVTSLGLKTGVVTSGNSLDYTDKCMDIMKEHEAAVKEMEAAAIAWVTALFG-TPLVCVKAVTDIVDGGRPTQEEFLENLGAAAAALQGVLPKVLEFVAGKALTAL 261          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: B8C9U6_THAPS (Methylthioadenosine/S-adenosyl homocysteine nucleosidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9U6_THAPS)

HSP 1 Score: 241 bits (616), Expect = 4.350e-77
Identity = 129/239 (53.97%), Postives = 162/239 (67.78%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHG--VDHVGTVAGGLAAWLSIEKFKP----DLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEA P ++HL+LE     FP   P K +  + N   + VVTNGK   H   VD+VGTV   +A +L+++K       DL+INAGT GGF R GA+IGDVF+++   NHDRRIAIP +T +G+G+ ++   E L   +  K GV TT NSLD+ E D+ HMLAN+ASVKDME AA+AWA E  N    F +KVVTD+VDGD+P+HEEFLENLG AA SLQEALPK +DFV  K   EL
Sbjct:   12 MEAEAMPFVNHLQLESVPDFFPPQTPFKAFRGKHNSCELTVVTNGKDTIHNTNVDNVGTVPAAMATFLALQKMNTEGVADLLINAGTCGGFQRKGASIGDVFLTTAVANHDRRIAIPDFTPYGIGRIESTSVENLASHINAKLGVCTTGNSLDYHEVDSHHMLANDASVKDMEAAAIAWAAEMWN-VKHFGVKVVTDVVDGDKPSHEEFLENLGKAAVSLQEALPKVIDFVCDKSHDEL 249          
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Match: A0A835W7S0_CHLIN (PNP_UDP_1 domain-containing protein n=5 Tax=Chlamydomonas TaxID=3052 RepID=A0A835W7S0_CHLIN)

HSP 1 Score: 238 bits (607), Expect = 8.290e-76
Identity = 121/234 (51.71%), Postives = 162/234 (69.23%), Query Frame = 1
Query:    1 MEAEAQPLIDHLKLELD-EAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEALPKTLDFVMGKRLSEL 699
            MEAEAQPLI  L L+ D  A     APC  ++ E  G  +HVV NGKC+ HGVD+VGTV   L+ +L++  FKPD+VI+AGT GGF   GAAIGDVF+ +  +NHDRRI +P + ++G+G    + T  L+ ALG K GVV++ NSLD+ ++  + M ++ A++K+ME AA+AWAC  +   P  C+K VTDIVDGDRPT EEFLENL +AA +LQ  LPK L ++ GK L+ L
Sbjct:   11 MEAEAQPLIQALGLKEDVPAKIVGPAPCVTFSGEHEGLAVHVVWNGKCKDHGVDNVGTVPASLSTYLAVLAFKPDVVISAGTCGGFKAQGAAIGDVFLGTAVINHDRRIPLPAFDKYGLGHAALLATPHLQAALGLKSGVVSSGNSLDYTDKCMEIMTSHGAALKEMEAAAIAWACALYK-VPLMCVKAVTDIVDGDRPTAEEFLENLHSAAAALQTTLPKVLAYLAGKELAAL 243          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349032 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YY09_9STRA3.610e-170100.00Nucleoside phosphorylase domain-containing protein... [more]
A0A6H5JA26_9PHAE7.460e-8959.23PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
D8LCX1_ECTSI1.200e-8858.87PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
I0YN20_COCSC3.910e-7954.27Purine and uridine phosphorylase n=2 Tax=Coccomyxa... [more]
A0A7S2V4K5_9STRA9.780e-7954.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
E1ZMX0_CHLVA2.320e-7854.27PNP_UDP_1 domain-containing protein (Fragment) n=2... [more]
A0A1D1ZX64_AUXPR3.370e-7853.85PNP_UDP_1 domain-containing protein n=1 Tax=Auxeno... [more]
A0A7S0S4A1_9CHLO2.250e-7753.85Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
B8C9U6_THAPS4.350e-7753.97Methylthioadenosine/S-adenosyl homocysteine nucleo... [more]
A0A835W7S0_CHLIN8.290e-7651.71PNP_UDP_1 domain-containing protein n=5 Tax=Chlamy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:719161..723551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349032|estExt_Genemark1.C_Ctg_340071
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00063,RC00318
KEGG ReactionR01401
KEGG ModuleM00034
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG koko:K01244
EC3.2.2.16
GOsGO:0000003,GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008477,GO:0008652,GO:0008930,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009888,GO:0009987,GO:0010087,GO:0016020,GO:0016053,GO:0016787,GO:0016798,GO:0016799,GO:0017144,GO:0019509,GO:0019752,GO:0032502,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048856,GO:0071265,GO:0071267,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Descriptionmethylthioadenosine nucleosidase activity
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28MG5@1|root,2QTZK@2759|Eukaryota
Evalue1.97e-89
Seed ortholog2880.D8LCX1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleoside phosphorylase domain
Ec32 orthologEc-07_007230.1
TranscriptId349354
TrackFilteredModels1
ProteinId349032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349032gene_8311Tribonema minus UTEX_B_3156 geneContig_34 719161..723551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349032Trimin1|349032|estExt_Genemark1.C_Ctg_340071Tribonema minus UTEX_B_3156 polypeptideContig_34 719161..723551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8311_6exon_8311_6Tribonema minus UTEX_B_3156 exonContig_34 719161..719301 -
exon_8311_5exon_8311_5Tribonema minus UTEX_B_3156 exonContig_34 719973..720083 -
exon_8311_4exon_8311_4Tribonema minus UTEX_B_3156 exonContig_34 721602..721835 -
exon_8311_3exon_8311_3Tribonema minus UTEX_B_3156 exonContig_34 722622..722733 -
exon_8311_2exon_8311_2Tribonema minus UTEX_B_3156 exonContig_34 723197..723293 -
exon_8311_1exon_8311_1Tribonema minus UTEX_B_3156 exonContig_34 723545..723551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8311CDS_8311Tribonema minus UTEX_B_3156 CDSContig_34 723545..723551 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8311 ID=mRNA_8311|Name=jgi.p|Trimin1|349032|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=702bp|location=Sequence derived from alignment at Contig_34:719161..723551- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCGGAGGCACAGCCGCTGATAGATCACTTGAAGCTGGAGCTGGA
TGAAGCGGCGTTCCCCGCCAGCGCTCCTTGCAAGTGCTACACTAGCGAGC
GCAATGGCTACACCATGCACGTGGTGACCAACGGCAAGTGCAGACGCCAC
GGAGTGGACCACGTGGGCACGGTGGCTGGGGGACTTGCGGCGTGGCTGTC
GATAGAAAAGTTCAAGCCGGACTTGGTGATCAACGCGGGCACCGCCGGCG
GCTTTAATCGCATGGGCGCTGCGATAGGGGACGTATTCGTGTCATCACGC
ACGGTAAACCACGACCGGCGCATCGCCATCCCCGGGTGGACGGAGTGGGG
CGTTGGCAAGACGGACGCGGTGCCCACGGAGCAGCTGCGCGGAGCGCTGG
GGTACAAGCACGGCGTGGTCACGACCTCCAACAGCCTTGATTTCATCGAG
GAGGACGCCAAGCACATGTTGGCCAACGAGGCGTCCGTCAAGGACATGGA
GGGGGCGGCGGTGGCGTGGGCATGCGAGCAGCACAACAACACCCCCTTCT
TCTGCATCAAGGTTGTCACAGACATTGTCGACGGCGACCGACCAACCCAC
GAGGAGTTCCTTGAAAACTTGGGCGCTGCTGCGCGCTCTCTACAGGAGGC
GCTGCCCAAGACTCTGGACTTTGTCATGGGCAAGCGCCTGTCAGAGCTAT
GA
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protein sequence of jgi.p|Trimin1|349032

>Trimin1|349032|estExt_Genemark1.C_Ctg_340071 ID=Trimin1|349032|estExt_Genemark1.C_Ctg_340071|Name=jgi.p|Trimin1|349032|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MEAEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRH
GVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSR
TVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIE
EDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTH
EEFLENLGAAARSLQEALPKTLDFVMGKRLSEL*
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mRNA from alignment at Contig_34:719161..723551-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8311 ID=mRNA_8311|Name=jgi.p|Trimin1|349032|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4391bp|location=Sequence derived from alignment at Contig_34:719161..723551- (Tribonema minus UTEX_B_3156 )
ATGGAAGGTGAGAGTCATTGGATGATGTCGCTGTTGTAGGTTTGAATTGT TTTGAATATGTTCCGATGCATCTTTGTCAGGTGATCAATCATGCACTGTA CCTGAATCACTAATATTGTTCAACGATGAATCTGTGCTCAGTGCATTGTA TCCGCGAGTTATCTCTGCTTCCTTTTAAGCTCTCTTGCCGTTTCAGAATT CTGAGAGCACATTGCTCACATTTCCCATACTTGCTGCTGCTTGTTCACGA CGCTGCAGCGGAGGCACAGCCGCTGATAGATCACTTGAAGCTGGAGCTGG ATGAAGCGGCGTTCCCCGCCAGCGCTCCTTGCAAGTGCTACACTAGCGAG CGCAAGTACGTGGCAGGCCGCATGTGTCATGTTGTATGCGTTCAATCTGC TACAGCCGCAGTAGCTCACTAACCTACACATGTATGGATTATTCCACATC CGCATAGGTCAAGTGCTTGCATTGAAACAAGCACAATTGCGCAAATTGAA CAATGCAGCAGCTGATGCACTGCGATGACCCAGGCTTTATGATTGCCCTT CACGCGCCTGTGGCTGTAGTGTGCGCCAACGTCTCTGCGAGCAGCAGCAT CTGACAAATCTCGACAACACAGTGCACGCAGTCACTGAGTCTCCCGCATC AGCGCTGGCCTTGCATGCACAGCCTGCCGACCTTGCATTTGTACTCCATC GCCACAATATATGATTGTGTGGCGCACCAGCCGGAAGGCTGGGACGAAAC TCTGTGTTGCCTGATGGCAATTCCTCTCTGCGCTAAGCGGCCTGTCATTT CTATTTCCCTTTCTACAGTGGCTACACCATGCACGTGGTGACCAACGGCA AGTGCAGACGCCACGGAGTGGACCACGTGGGCACGGTGGCTGGGGGACTT GCGGCGTGGCTGTCGATAGAAAAGTTCAAGGTACGATTTACAGTACCCTA GCTGCTGCTGGCTGAAAGGGGTTTGCCTCACATGTCTGCAGATTAGTCCT CACTGTGAACTACCTCCTTGCTTCAATGGGCGATCATTGCCAAATTGGCG CGATTTCAGCGCAGGCGCCTGCTGCCGATACAAAGTAGCCTATTCTCACT GTCAGCTACCCCCTTGCTTGAATGATCAAAGTGCGTGTTTCTTACAAGGT TCTAGATTAGGTGCCAGCAAAAAAGCCTCTGTGGTGCTCACCATTGCAGC GAGCGCTGCTGTGAGCTAGCTGACACGCGCACACTGCCGGTGAGTTCGCA AGTGGCATCGCGGCGTGGTTGCACTTTTGAACAGACCTACAGGCACAGCT GCGCACATATCAGTCGCGTTGACCACGTCATCTGCATGATGGTCACCATC CTCTCCTCAAATGTGCGCATCCTGCACTCAACGCGTAGCCCGTTTTGGTG ATCAATGCGACATGCAAAACTTTCAAAAAATGGATTCGGGACGCATTTGC ACCCCTGCAAGAAAGTTCAGCCAGCTCCGCATTTGACACTTGATCTGCGT GAGAGCCACCAGCGCCTCTTCAACTCTGTATATGCTGCGCTCACTCCGCA GCTGGACTCCGTGATCAACGCGACACCCATCGTGTTGAGGTTCAGGGTTG GGGCGCGCGTTCGCACGGAACACAAACAGCTGCACGCACACCATCATTGC TCTGATGATCTGTGTGAGAGTCACCAACGCCTCTTCGAATCTGTGTGTGC CACACTTACCTCGCAGCCGGACTTGGTGATCAACGCGGGCACCGCCGGCG GCTTTAATCGCATGGGCGCTGCGATAGGGGACGTATTCGTGTCATCACGC ACGGTAAACCACGACCGGCGCATCGCCATCCCCGGGTGGACGGAGTGGGG CGTTGGCAAGACGGACGCGGTGCCCACGGAGCAGCTGCGCGGAGCGCTGG GGTACAAGCACGGCGTGGTCACGACCTCCAACAGCCTTGATTTCATCGAG GTGGGTATTTTTTGTGGCAGCCGCGCTGGGCATGTATATTTGTGAATCAT GTGTCATGGGAACGGTGTCCGTTGCAGTACTCACGTTGTGGGTGCAGCTG CGCACAGCGCTGCGGTACAAGCACGGCGTTGGTACGACCTCAGAAAGCCT CGATTTCATTGAGGCACGCTTGTGCGTGCGGCATGTGTTGCGTACTGTAC TCCCTGAAGTACTTCAAAGTACGTGTCGTCGGACCGGTTCAGAGCATGTG TGGTGGGACCGTTTTTCGTCGCAGAGCTCACATAGTAAGTGCAGCTGCAC GGAGCGCTAGGGTACAGGTACGGCGTGGTGACGACCTCTAACATACTGGA CGTTGTTGGGATAGGTATGCTTGCGCGGTATGGGTATGGTATTTGAGAAG TATGTGTTTGTGAAGCTTTATTTGGAGGCACGTTTGTGTGTGGCACTGCT CGTACGGCAAGGTCAGCAGTCAGCTGGCAGCACATTTTTGTACAGATGCA CAGGCACGTCGTGGCTACAATGTCCAGTAGCGTGGGCTTCATTGTTCGAA GTAGGCATGCTTACGCAGCAGATGACGATGTCTGTCGTTGCTGTGACCAC ACAAATTATTGCAAGTTGATGGGTGGCCCACCCATATATCTAGTTGTGCT CTCTCCGCACAGTCTGTAAATGCTGATACTGGCTGCACTGATGCAGACCG GATGCTCATACGTGCCAGTACCTGAAGTTGGCATTACAAAAGACATGTAC TAGCAAGACAGCCGATTTTGAGACTTTTGGTTAACCTTAAATTACCCCTG GTGCCAGTACCTGAAGTTGACATTACAAAAGTCATGTACTAGCAAGACAG CTGAATTAGAGACTTTCGGTTAATCTGAAAGTACTCCTGGCAGTCACATT CGCCGACCGGCATTGATGCGAAGAGGTCCCGTGGGCCTGCGCCGAATTAC TGCACTCAGCTCGCATTTCCTGCAGGTTTTGGCGCACTCATCACCTTCCT GAACCCACACAAGCTGGCGTGATACCGACGCCTGCTTGTGACGTTGGCTC TAGTGAATCCTGCTACCACCACTTCTTTGCTGATGGAAACGGGGGGCTGG TCCCTATCTGGTGCAGTGCAGTGCTCAGCTCATTGTTAGCTGCCTCCAAC GTCGGCCAGCAGCGAGCAGATCGTGTCAATGAATTCGTTGAGCGTTGTGG GGCCATCTGTACTGCTGAGCACTGACTGTGCAGCCCCCTTCTGCGCCTGC CCCCAAGGGCATGCCGCGCGCCGCACTTCGCCACAGCAGGCATGGAACTT CGGACTTGGTTGCAACTTGTGGTACTTGGACGTGTGCCGTCGCCGCGCTG CGCGTCTCTGCAAGAGGCATGGAACTTCGAACTCGACTGCACATTGTGGT ACTCGATGCACCGCCGCTGGCACAAGCGGCAGCGCGCGTTGCGACCGCAG ATGCGACGCGTGTTGCCGAGCGCTGCTGCTGACGCTGCGATACATACCTA CGCTGATGTCCCATGCAGGAGGACGCCAAGCACATGTTGGCCAACGAGGC GTCCGTCAAGGACATGGAGGGGGCGGCGGTGGCGTGGGCATGCGAGCAGC ACAACAACACCCCCTTCTTCTGCATCAAGGTGCTGCGGCAGCCAAAACCA ATGACTCAAATCAAAGTCTCGAACAATATAAAGTGTACACTTTTAGTCCC TACTTGCGCTTCGAGAAGTATACAAGTCTAGTCGTGCTTATCAACATGCA CGCACAAGTGTACTTTGGAGTATACTGCCGAAGTGTGTATATACTTCAAG TATGCAACCGGCAGTGCTTGCAAACCCTTCTTCTTCCGCATGGGGTTTGA CACGGCTGCAACGCAGTGCGACTGCGACTTGTGCTTCTCGTGGGAATTCA ACCGATATGACATGCACATGGAACTCGCATATCCTGAGCCTTGGTGATTT CGCAACTGCAACAGCATCCGCAGCGTGCACCACGTAACTCTAAGAAGGCC GTTGCGCAGAGCGCTTCAACCTGCTCCTGATGTTGATGCGGCACGGCGGA CATGCTCATGCGGTAGTCTGCGCTCTGTGAATCATGTCGACGCCATGAAA AATTCATGCCTTCTCTCTGCGATGGCCATGCACATACGCCACCTACAGTT TCGGCTCGCCGCCGTGCACTGGATGTACCACGGGCCGGACACCACCCCTT CCCAAACTTCAAGGCATGCTATAAAACATTTTTACTTCAAGTGACGTTTC ACCGCCTCACACAGCTCTACCCGCCCGCTGCGTGCGCGTCACTCCGGCAG GTTGTCACAGACATTGTCGACGGCGACCGACCAACCCACGAGGAGTTCCT TGAAAACTTGGGCGCTGCTGCGCGCTCTCTACAGGAGGCGCTGCCCAAGA CTCTGGACTTTGTCATGGGCAAGCGCCTGTCAGAGCTATGA
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Coding sequence (CDS) from alignment at Contig_34:719161..723551-

>mRNA_8311 ID=mRNA_8311|Name=jgi.p|Trimin1|349032|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_34:719161..723551- (Tribonema minus UTEX_B_3156 )
ATGGAAGCGGAGGCACAGCCGCTGATAGATCACTTGAAGCTGGAGCTGGA
TGAAGCGGCGTTCCCCGCCAGCGCTCCTTGCAAGTGCTACACTAGCGAGC
GCAATGGCTACACCATGCACGTGGTGACCAACGGCAAGTGCAGACGCCAC
GGAGTGGACCACGTGGGCACGGTGGCTGGGGGACTTGCGGCGTGGCTGTC
GATAGAAAAGTTCAAGCCGGACTTGGTGATCAACGCGGGCACCGCCGGCG
GCTTTAATCGCATGGGCGCTGCGATAGGGGACGTATTCGTGTCATCACGC
ACGGTAAACCACGACCGGCGCATCGCCATCCCCGGGTGGACGGAGTGGGG
CGTTGGCAAGACGGACGCGGTGCCCACGGAGCAGCTGCGCGGAGCGCTGG
GGTACAAGCACGGCGTGGTCACGACCTCCAACAGCCTTGATTTCATCGAG
GAGGACGCCAAGCACATGTTGGCCAACGAGGCGTCCGTCAAGGACATGGA
GGGGGCGGCGGTGGCGTGGGCATGCGAGCAGCACAACAACACCCCCTTCT
TCTGCATCAAGGTTGTCACAGACATTGTCGACGGCGACCGACCAACCCAC
GAGGAGTTCCTTGAAAACTTGGGCGCTGCTGCGCGCTCTCTACAGGAGGC
GCTGCCCAAGACTCTGGACTTTGTCATGGGCAAGCGCCTGTCAGAGCTAT
GA
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