mRNA_8255 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349000
Unique NamemRNA_8255
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A836CDU4_9STRA (zf-CHCC domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU4_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.140e-39
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 2 
Query:  110 MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAKE 304
            MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAKE
Sbjct:    1 MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAKE 65
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: K3WW26_GLOUD (zf-CHCC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW26_GLOUD)

HSP 1 Score: 64.3 bits (155), Expect = 4.360e-11
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 2 
Query:   92 GAQLQKMSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAK 301
            GA+ Q+ +      D    P      HRSDA QRIA V V+EV+G +A+C GG G LGHP E++ L   K
Sbjct:   29 GARFQQRAGFATIYDVNPTPYEDINRHRSDAEQRIAQVPVVEVEGNIAVCDGGGGALGHPLEYIQLDTVK 98
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A2D4BTY1_PYTIN (zf-CHCC domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTY1_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 8.050e-10
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 2 
Query:   53 LLRRCRVSSALFAGAQLQKMSTSRVKTDFETF-----PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTL 289
            L+R  R S+A  A   +     S+ +  F T      P      HRSDA QRIA V +++V+G++A+C GG G LGHP E++ L
Sbjct:   17 LVRAARRSAATPATRNVMASIASQQRAGFATIYDNKMPYEDVNRHRSDAEQRIAQVPIVDVEGDVAVCDGGGGALGHPLEYIQL 100
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A7S1GQT8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQT8_CYCTE)

HSP 1 Score: 60.5 bits (145), Expect = 1.380e-9
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:  149 PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 295
            P    G HRS+A + I    +IEVDGE+A+C GGAGPLGHP E+++L +
Sbjct:   72 PKYALGKHRSNALELIQQQPIIEVDGEMAVCDGGAGPLGHPLEYISLER 120
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A3R7JAB4_9STRA (zf-CHCC domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JAB4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.240e-9
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 2 
Query:  149 PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTKAK 301
            P      HRSDA QRIA V V+EV G +A+C GG G LGHP E++ L   K
Sbjct:   39 PFEDVNRHRSDAEQRIAQVPVVEVAGNVAVCDGGGGALGHPVEYIQLDTVK 89
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A1E7F2D1_9STRA (zf-CHCC domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2D1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.450e-9
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 2 
Query:  143 TFPTSKY--GTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 295
            T+  S+Y  G HRS+A + I  + ++EV+GE+AIC GG G LGHP E+++L +
Sbjct:    7 TYQESEYKLGKHRSNALELIEKIPIVEVEGEMAICDGGGGALGHPLEYISLQR 59
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A1Z5KNK4_FISSO (zf-CHCC domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNK4_FISSO)

HSP 1 Score: 57.4 bits (137), Expect = 2.400e-8
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  158 KYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 295
            K G HRS+A + +  V +IEV+GE+A+C GG G LGHP E+++L +
Sbjct:   61 KLGKHRSNAMELVHKVPIIEVEGEMAVCDGGGGALGHPLEYISLAR 106
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: B7G589_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G589_PHATC)

HSP 1 Score: 57.4 bits (137), Expect = 2.400e-8
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  158 KYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 295
            K G HRS+A + +  ++ IEVDGE+AIC GG G LGHP E+++L +
Sbjct:   63 KLGKHRSNALELVHKIAPIEVDGEMAICDGGGGALGHPLEYISLAR 108
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BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: F0X2A7_9STRA (Uncharacterized protein AlNc14C931G12647 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2A7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:  170 HRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTL 289
            HRSDA  RIA V V+EV+G LA+C GG G LGHP E++ L
Sbjct:   55 HRSDAEIRIAQVPVVEVEGNLAVCDGGGGALGHPLEYIQL 94
[Close]
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Match: A0A7S1E554_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E554_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.230e-7
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 2 
Query:  149 PTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGPLGHPTEFMTLTK 295
            P   +G HRS+A   I    +IEV+GE+AIC GG G LGHP E+++L +
Sbjct:   69 PKYLHGKHRSNALDLIEKQDIIEVEGEMAICDGGGGSLGHPLEYISLER 117
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349000 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A836CDU4_9STRA2.140e-39100.00zf-CHCC domain-containing protein (Fragment) n=1 T... [more]
K3WW26_GLOUD4.360e-1144.29zf-CHCC domain-containing protein n=1 Tax=Globispo... [more]
A0A2D4BTY1_PYTIN8.050e-1039.29zf-CHCC domain-containing protein (Fragment) n=1 T... [more]
A0A7S1GQT8_CYCTE1.380e-953.06Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A3R7JAB4_9STRA2.240e-952.94zf-CHCC domain-containing protein n=3 Tax=Phytopht... [more]
A0A1E7F2D1_9STRA8.450e-947.17zf-CHCC domain-containing protein n=1 Tax=Fragilar... [more]
A0A1Z5KNK4_FISSO2.400e-850.00zf-CHCC domain-containing protein n=1 Tax=Fistulif... [more]
B7G589_PHATC2.400e-852.17Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
F0X2A7_9STRA3.050e-862.50Uncharacterized protein AlNc14C931G12647 n=1 Tax=A... [more]
A0A7S1E554_9STRA2.230e-748.98Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_34contigContig_34:181912..182847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349000|estExt_Genemark1.C_Ctg_340023
DescriptionNADH dehydrogenase iron-sulfur protein 6, mitochondrial. Source PGD
COG categoryC
Max annot lvl121069|Pythiales
EggNOG OGsKOG3456@1|root,KOG3456@2759|Eukaryota,1MH8X@121069|Pythiales
Evalue1.54e-11
Seed ortholog115417.EPrPW00000021175
Hectar predicted targeting categoryother localisation
TranscriptId349322
TrackFilteredModels1
ProteinId349000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349000gene_8255Tribonema minus UTEX_B_3156 geneContig_34 181912..182847 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8255_1exon_8255_1Tribonema minus UTEX_B_3156 exonContig_34 181912..182159 +
exon_8255_2exon_8255_2Tribonema minus UTEX_B_3156 exonContig_34 182791..182847 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_8255UTR5_8255Tribonema minus UTEX_B_3156 five_prime_UTRContig_34 181912..182020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8255CDS_8255Tribonema minus UTEX_B_3156 CDSContig_34 182021..182159 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8255UTR3_8255Tribonema minus UTEX_B_3156 three_prime_UTRContig_34 182847..182847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349000Trimin1|349000|estExt_Genemark1.C_Ctg_340023Tribonema minus UTEX_B_3156 polypeptideContig_34 182021..182846 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8255 ID=mRNA_8255|Name=jgi.p|Trimin1|349000|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=305bp|location=Sequence derived from alignment at Contig_34:181912..182847+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGGCCCGAAATGCATCTCGCACACATGGCACAAGAGGTGAGGTGACCT
CGCTGCTGCGGCGATGCCGGGTGTCCAGCGCCTTGTTCGCTGGCGCACAG
CTGCAGAAAATGAGCACGTCAAGAGTGAAGACCGACTTCGAGACCTTTCC
TACGAGCAAGTACGGCACGCACCGGAGCGATGCGCCTCAGCGGATCGCCG
CTGTGTCGGTTATTGAGGTGGACGGCGAGTTGGCAATCTGCACCGGCGGA
GCTGGGCCGTTGGGTCATCCTACGGAATTCATGACGCTCACCAAGGCAAA
GGAGG
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protein sequence of jgi.p|Trimin1|349000

>Trimin1|349000|estExt_Genemark1.C_Ctg_340023 ID=Trimin1|349000|estExt_Genemark1.C_Ctg_340023|Name=jgi.p|Trimin1|349000|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=65bp
MSTSRVKTDFETFPTSKYGTHRSDAPQRIAAVSVIEVDGELAICTGGAGP
LGHPTEFMTLTKAKE
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mRNA from alignment at Contig_34:181912..182847+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8255 ID=mRNA_8255|Name=jgi.p|Trimin1|349000|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=936bp|location=Sequence derived from alignment at Contig_34:181912..182847+ (Tribonema minus UTEX_B_3156 )
CGCGGCCCGAAATGCATCTCGCACACATGGCACAAGAGGTGAGGTGACCT
CGCTGCTGCGGCGATGCCGGGTGTCCAGCGCCTTGTTCGCTGGCGCACAG
CTGCAGAAAATGAGCACGTCAAGAGTGAAGACCGACTTCGAGACCTTTCC
TACGAGCAAGTACGGCACGCACCGGAGCGATGCGCCTCAGCGGATCGCCG
CTGTGTCGGTTATTGAGGTGGACGGCGAGTTGGCAATCTGCACCGGCGGT
GAGTGCAGCTGTACCTTCAACTGTTCTGAGTTTTGGATCTTAACGTGTGT
GAGCAGACTGCCGCCGCCGCCGCGGTGCAAATCGTTGCCGCAGGCGCGTG
GTAGTCGCGTCTCTTTATTTTTGAATTACGTACATCGTGACGCAGTGTCG
TGGCTATGCTCCACCAAGGCTGCTGCAGCTTCTGCGGTGCTGTTCGCTCT
GTTGCATCTTCACCCTGATGCTATTTGACCCTGACAGGTGACGCACCACG
CTATATCCATAGCCACGACTTCCACAACCTGGAGCCTGTCGCAGTTTTCA
TTATCGTCCGACATGATGGTGGTCTGCCCATGCTGCGATAACGACACTGG
TGCAGAACGCATGTTTATTTCTGGAGGGAATATGCCGCCTCACGAGGAGC
CTTATATCCTGTGTCCTGGGTGCTTCCTTGATTGACAAGCTGCGTACATT
CTCGTGAGAAAGTAAATGTTGTGGTGTTTTCTAACGTAAAGGTTTGGTGA
CAGGAGCTTCGGTTTTACCTCAATCCATGCAACACATCCAGACAAGCTAG
CTCCCTTCCCGCAGCATTACAGACGCCATCCAATGCACTTAACAGCGTTT
GAACATCTGTTGTCACCCCCCGCATGCAGGAGCTGGGCCGTTGGGTCATC
CTACGGAATTCATGACGCTCACCAAGGCAAAGGAGG
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Coding sequence (CDS) from alignment at Contig_34:181912..182847+

>mRNA_8255 ID=mRNA_8255|Name=jgi.p|Trimin1|349000|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=195bp|location=Sequence derived from alignment at Contig_34:181912..182847+ (Tribonema minus UTEX_B_3156 )
ATGAGCACGTCAAGAGTGAAGACCGACTTCGAGACCTTTCCTACGAGCAA
GTACGGCACGCACCGGAGCGATGCGCCTCAGCGGATCGCCGCTGTGTCGG
TTATTGAGGTGGACGGCGAGTTGGCAATCTGCACCGGCGGAGCTGGGCCG
TTGGGTCATCCTACGGAATTCATGACGCTCACCAAGGCAAAGGAG
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