mRNA_8254 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A836CFL8_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL8_9STRA) HSP 1 Score: 400 bits (1027), Expect = 6.450e-140 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKTGVTEEETAIVEQLRQEERQXXXXXXXXXXXXXXXXXPTAPNPLSCLPKKNAKAKQQDKPKRKRK 693 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKTGVTEEETAIVEQLRQEERQXXXXXXXXXXXXXXXXXPTAPNPLSCLPKKNAKAKQQDKPKRKRK Sbjct: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKTGVTEEETAIVEQLRQEERQXXXXXXXXXXXXXXXXXPTAPNPLSCLPKKNAKAKQQDKPKRKRK 231
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A6H5KVJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ1_9PHAE) HSP 1 Score: 187 bits (474), Expect = 5.940e-55 Identity = 104/200 (52.00%), Postives = 137/200 (68.50%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTI----TEHAPG-----------------KG-SPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKT-GVTEEETAIV 531 MR+TRAKQYRR LRFFRIVYG+ APYKV+LDGNFIH C++ KV++ +R+ +VLQG K L VP++A +EL+ALG +FQ A FA C+ + E+ G KG PA++I A I +DN +Y+VASQDE LR +LR V GCPL+++S+TVL+MEQ SGK+KA FE ER+K G TEEE ++ Sbjct: 1 MRVTRAKQYRRHLRFFRIVYGISAPYKVILDGNFIHGCISSKVDIEKRLTSVLQGAKMHLFVPRSAREELKALGPEFQKAYNFAIGHCRGLPPPRNENQAGGAXXXXXXXXXXXXXGEKGPDPAKEIIAAIGADNEGKYLVASQDENLRMRLRRVPGCPLVFVSRTVLVMEQPSGKSKAEFEKAERKKAVGTTEEEDRVL 200
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A7S2B5Q5_9STRA (Hypothetical protein n=3 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B5Q5_9STRA) HSP 1 Score: 136 bits (342), Expect = 8.600e-36 Identity = 81/219 (36.99%), Postives = 119/219 (54.34%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKTGVTEEET---AIVEQLRQEERQXXXXXXXXXXXXXXXXXPTAPNPLSCLPKK 648 MR+ R K+ R+ L FFR+ +G+ PY+VLLDGNFIH C ++K+++ R+ L GEK+ L VP I EL LG + A FA +C+ + S + I LI N Y+VASQDE+LR +LR + G PL+++ +TVL++E +K A +E +K V +E+ +V Q+R+E + A NPLSC KK Sbjct: 1 MRLLRGKKARKTLAFFRLNFGISPPYRVLLDGNFIHECTSYKIDILARLGKQLGGEKFMLYVPSCVISELEMLGTNMKPALTFALENCEVVA--CDSAESCSAGILGLIGEKNAEGYLVASQDEDLRCELRAIPGVPLMFIKRTVLILESTGHASKTATVQMETKKVAVVGDESKAMGLVRQIREEAKSAQRLRVEGHSQRPKKRAKGA-NPLSCKKKK 216
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A7S2B6T0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6T0_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.040e-27 Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 1 Query: 58 YGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKTGVTEEET---AIVEQLRQE 549 + V Y+VLLDGNFIH C ++K+++ R+ L GEK+ L VP I EL LG + A FA +C+ + S + I LI N Y+VASQDE+LR +LR + G PL+++ +TVL++E +K A +E +K V +E+ +V Q+R+E Sbjct: 7 HRVACSYRVLLDGNFIHECTSYKIDILARLGKQLGGEKFMLYVPSCVISELEMLGTNMKPALTFALENCEVVA--CDSAESCSAGILGLIGEKNAEGYLVASQDEDLRCELRAIPGVPLMFIKRTVLILESTGHASKTATVQMETKKVAVVGDESKAMGLVRQIREE 171
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A7S1C1L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1L6_9STRA) HSP 1 Score: 111 bits (278), Expect = 7.880e-26 Identity = 68/162 (41.98%), Postives = 96/162 (59.26%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQG--EKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFE 480 MRI R KQ+R+ LRF+R++Y V P+KVLLDGNFIH L E+ + ++LQ + +L V ++ELR+LG +F A A H S AE I +LI + N + VASQD LR++LR VAG P++ LS++VL++EQ S +K E Sbjct: 37 MRILRQKQHRKILRFYRMMYNVSPPFKVLLDGNFIHIGLRTSAEIKRLLPSLLQERPDVVRLFVTPCILNELRSLGAEFGDTLAEARTFRVARCGHGDDPVSAAECIASLIGTKNKEHFFVASQDGLLRSRLRAVAGTPIILLSQSVLVLEQPSDASKGLVE 198
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: W7T2Y0_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2Y0_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.160e-26 Identity = 69/186 (37.10%), Postives = 106/186 (56.99%), Query Frame = 1 Query: 28 RRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTI------TEHAP-GKG--SPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALERRKTGV-TEEETAIVEQLRQEER 555 R+ LRF+RIVYG+ PYK+L+DGNFIH L K+++ +R++ +L E P+ +DEL A+G F+AA + C + T H GK S I ++ N +Y+VA+QD+EL+A+LR+V LL++S+ V LME S ++ E K + TEEE ++ LR +E+ Sbjct: 2 RKWLRFYRIVYGITPPYKILVDGNFIHMALKVKIDIRDRLKKMLLVENLACYAPQAVLDELAAMGPDFRAAHEWVQSCCDLVPNPTIKTNHDDSGKNYVSAGAAICTMVGEKNIDKYMVATQDQELKARLRHVPSVALLFVSRAVFLMEAPSTSSRLFSAKQEGEKFRLLTEEERCLLASLRHKEK 187
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A4P9X7C9_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X7C9_9FUNG) HSP 1 Score: 106 bits (264), Expect = 3.220e-25 Identity = 65/167 (38.92%), Postives = 90/167 (53.89%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKF----QAAAAFATRSCQTITEHAPGKGSPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKAAFEALE 489 MR R K Y+R LR + + + +APY++LLDGNFIH + KV + E ++ + E + +V ++EL+ALG+ F AA F R C P A IE I N Y VASQD ELR ++R+V G PL + +TVL+ME S +T A A E Sbjct: 1 MRSKREKSYKRALRLYNVAFKFRAPYQILLDGNFIHQAVKQKVRIQEALKDTVSAE-VRPMVTSCVLNELQALGKPFVAAYTAAKCFEVRGCLHQRHPVPA----ARCIETTIGPVNTFHYCVASQDNELRKRMRDVVGTPLFHFKRTVLIMEPVSRQTLTAAGAKE 162
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A3M6VBL2_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VBL2_9STRA) HSP 1 Score: 107 bits (267), Expect = 6.370e-25 Identity = 65/164 (39.63%), Postives = 97/164 (59.15%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYK--LLVPKTAIDELRALG----EKFQAAAAFATRSCQTITEHAPGKG-SPAEQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKA 471 MR RAK R+ LR F + G++APYKVLLDGNFI CL KV++ ER+ LQ + Y+ VP+ A++EL+ LG E ++ A +F +E K ++ I+ +I N +++V +Q+ ELR LR V G PL+YL+++VL+ E+ S T A Sbjct: 1 MRYLRAKGIRKALRQFHFLCGLKAPYKVLLDGNFIAMCLQMKVDVQERVPKYLQVKPYECEFYVPRAALEELQLLGKTMKEAYELAKSFKVAESYDQSEKEEDKPVDVSKAIQIIIGDTNDRKFVVCTQEVELRKALRLVPGVPLMYLNRSVLVFEEISHATLA 164
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A024T8F2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T8F2_9STRA) HSP 1 Score: 107 bits (266), Expect = 8.350e-25 Identity = 61/156 (39.10%), Postives = 89/156 (57.05%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYKLLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPA-EQIEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKT 465 MR RAK R+ LR F+ + G++ PYKVLLDGNFI C+ V++ R+ LQ V + +DEL+ L + AA+ S + E P + A + A I S N ++IVA+Q+ ELR++LR V G PL+YL+++VL+ E S T Sbjct: 1 MRYLRAKHIRKALRQFQFLCGIKPPYKVLLDGNFIAMCIKMHVDIAVRLPTFLQTNNCTYFVTRAVLDELKLLSDNADMRAAWEAASSFEVVEGDPDATNDATNSMLAAIGSRNDRKFIVATQETELRSQLRRVPGVPLIYLNRSVLVFEDMSEAT 156
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Match: A0A225W858_9STRA (rRNA-processing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W858_9STRA) HSP 1 Score: 107 bits (266), Expect = 8.540e-25 Identity = 64/162 (39.51%), Postives = 95/162 (58.64%), Query Frame = 1 Query: 1 MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQAVLQGEKYK--LLVPKTAIDELRALGEKFQAAAAFATRSCQTITEHAPGKGSPAEQ---IEALISSDNPHRYIVASQDEELRAKLRNVAGCPLLYLSKTVLLMEQASGKTKA 471 MR RAK R+ LR F + G++ PYKVLLDGNFI C+ KV++ ER+ LQ + ++ VP+ A++EL+ LGE + A A +S + H K + I+ +I N +++V +Q+ ELR LR V G PLLYL+++VL+ E+ S T A Sbjct: 1 MRYLRAKGIRKALRQFHFLCGIKPPYKVLLDGNFIAMCMQMKVDVHERVPKYLQVKPHECEFYVPRAALEELKMLGEAMKEAYELA-KSFKVAETHNQPKNEAMDVSKCIQTIIGDKNDGKFVVCTQEVELRKALRQVPGVPLLYLNRSVLVFEEISRATLA 161 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138918 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8254 ID=mRNA_8254|Name=jgi.p|Trimin1|138918|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_34:179863..181781- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCGCATAACAAGAGCAAAGCAGTATCGGCGGCGCCTGCGCTTCTTTCGback to top protein sequence of jgi.p|Trimin1|138918 >Trimin1|138918|gw1.34.20.1 ID=Trimin1|138918|gw1.34.20.1|Name=jgi.p|Trimin1|138918|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp MRITRAKQYRRRLRFFRIVYGVQAPYKVLLDGNFIHACLAHKVEMGERIQback to top mRNA from alignment at Contig_34:179863..181781- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8254 ID=mRNA_8254|Name=jgi.p|Trimin1|138918|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1919bp|location=Sequence derived from alignment at Contig_34:179863..181781- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_34:179863..181781- >mRNA_8254 ID=mRNA_8254|Name=jgi.p|Trimin1|138918|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_34:179863..181781- (Tribonema minus UTEX_B_3156 )back to top |