mRNA_8247 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348995
Unique Name	mRNA_8247
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|348995 vs. uniprot
Match: A0A835Z2W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W3_9STRA)

HSP 1 Score: 850 bits (2195), Expect = 1.000e-308
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 1

Query:    1 MRSLGAGVTQSAYVEAIVAANAEAEVQGNIASATKAQLDAALKYVNQQQERWERELATTSGTNSLAPLAGTGLQARPFVDISTGSLYTPDAETLSRSVTALVFIAFVAVFAMATALAGWAWLFQERRMRRLLRAAMTDDLAKHSKPLTQTPHGNKTLDGAGSKYAWHTGKDAATTPYNVTANPSSKSVGGMAANARLNATPAKSQQTNGPTPYDSPDRSSLYSSNDDVSPLTNSSSSTGEGITVKGLMSIAPTVKEERWVALPPNPEWVVKSPSPQPIMAPIRTKQASKASLEEQKARXXXXXXXXXAEAEAAQVRQQTREQWVPQLQVPVEVEEIMDRLSPLPTLSNXXXXXXXXXXILPRDHPLAVQDHLAARSIASTAPSMVSATSASSNASGNSIFDVDSVGYSPWPESSMQLSEDQSVAHASQASSVWESAWMEKRADSRAASSKGLFRSNRTEDSPGSDSTVTHDSSDKADSPGTDKD 1452
            MRSLGAGVTQSAYVEAIVAANAEAEVQGNIASATKAQLDAALKYVNQQQERWERELATTSGTNSLAPLAGTGLQARPFVDISTGSLYTPDAETLSRSVTALVFIAFVAVFAMATALAGWAWLFQERRMRRLLRAAMTDDLAKHSKPLTQTPHGNKTLDGAGSKYAWHTGKDAATTPYNVTANPSSKSVGGMAANARLNATPAKSQQTNGPTPYDSPDRSSLYSSNDDVSPLTNSSSSTGEGITVKGLMSIAPTVKEERWVALPPNPEWVVKSPSPQPIMAPIRTKQASKASLEEQKARXXXXXXXXXAEAEAAQVRQQTREQWVPQLQVPVEVEEIMDRLSPLPTLSNXXXXXXXXXXILPRDHPLAVQDHLAARSIASTAPSMVSATSASSNASGNSIFDVDSVGYSPWPESSMQLSEDQSVAHASQASSVWESAWMEKRADSRAASSKGLFRSNRTEDSPGSDSTVTHDSSDKADSPGTDKD
Sbjct:    1 MRSLGAGVTQSAYVEAIVAANAEAEVQGNIASATKAQLDAALKYVNQQQERWERELATTSGTNSLAPLAGTGLQARPFVDISTGSLYTPDAETLSRSVTALVFIAFVAVFAMATALAGWAWLFQERRMRRLLRAAMTDDLAKHSKPLTQTPHGNKTLDGAGSKYAWHTGKDAATTPYNVTANPSSKSVGGMAANARLNATPAKSQQTNGPTPYDSPDRSSLYSSNDDVSPLTNSSSSTGEGITVKGLMSIAPTVKEERWVALPPNPEWVVKSPSPQPIMAPIRTKQASKASLEEQKARXXXXXXXXXAEAEAAQVRQQTREQWVPQLQVPVEVEEIMDRLSPLPTLSNXXXXXXXXXXILPRDHPLAVQDHLAARSIASTAPSMVSATSASSNASGNSIFDVDSVGYSPWPESSMQLSEDQSVAHASQASSVWESAWMEKRADSRAASSKGLFRSNRTEDSPGSDSTVTHDSSDKADSPGTDKD 484

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348995 vs. uniprot

BLAST of jgi.p|Trimin1|348995 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z2W3_9STRA	1.000e-308	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_34	contig	Contig_34:135761..139395 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348995\|estExt_Genemark1.C_Ctg_340017
Hectar predicted targeting category	other localisation
TranscriptId	349317
Track	FilteredModels1
ProteinId	348995

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348995	gene_8247	Tribonema minus UTEX_B_3156	gene	Contig_34 135761..139395 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348995	Trimin1\|348995\|estExt_Genemark1.C_Ctg_340017	Tribonema minus UTEX_B_3156	polypeptide	Contig_34 135761..139278 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8247_1	exon_8247_1	Tribonema minus UTEX_B_3156	exon	Contig_34 135761..136495 +
exon_8247_2	exon_8247_2	Tribonema minus UTEX_B_3156	exon	Contig_34 136944..137036 +
exon_8247_3	exon_8247_3	Tribonema minus UTEX_B_3156	exon	Contig_34 137469..137567 +
exon_8247_4	exon_8247_4	Tribonema minus UTEX_B_3156	exon	Contig_34 138094..138168 +
exon_8247_5	exon_8247_5	Tribonema minus UTEX_B_3156	exon	Contig_34 138714..138755 +
exon_8247_6	exon_8247_6	Tribonema minus UTEX_B_3156	exon	Contig_34 138868..139395 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8247	CDS_8247	Tribonema minus UTEX_B_3156	CDS	Contig_34 135761..136495 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_8247	UTR3_8247	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_34 139279..139395 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_34:135761..139395+
coding sequence from alignment at Contig_34:135761..139395+

spliced messenger RNA

>mRNA_8247 ID=mRNA_8247|Name=jgi.p|Trimin1|348995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1572bp|location=Sequence derived from alignment at Contig_34:135761..139395+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATCGCTCGGCGCAGGTGTTACACAATCGGCATATGTGGAGGCAAT
CGTGGCGGCGAACGCGGAGGCTGAGGTTCAGGGGAACATAGCTTCGGCGA
CCAAGGCGCAGCTCGACGCGGCGCTCAAGTACGTGAACCAGCAGCAGGAG
CGATGGGAGCGGGAGCTGGCAACCACCAGCGGCACCAACTCTCTGGCACC
ATTGGCTGGCACAGGGCTTCAGGCCAGGCCGTTTGTGGACATCAGCACCG
GATCGCTCTACACCCCTGATGCGGAAACCCTGTCCAGATCGGTCACGGCG
CTGGTGTTCATCGCCTTCGTTGCGGTGTTCGCGATGGCGACCGCGCTGGC
GGGGTGGGCATGGCTGTTCCAGGAGCGGCGCATGCGGCGACTGCTGCGCG
CTGCCATGACGGACGACCTTGCCAAGCACTCCAAACCCCTGACGCAAACG
CCGCACGGTAACAAGACTCTCGACGGCGCTGGCAGCAAGTACGCATGGCA
CACCGGCAAGGACGCGGCGACGACGCCCTATAACGTAACTGCCAACCCCA
GTTCGAAATCGGTGGGGGGTATGGCGGCGAACGCGCGGCTCAATGCGACC
CCTGCCAAGTCTCAGCAGACGAATGGGCCCACGCCCTACGACTCGCCCGA
CAGGTCGAGTCTGTACTCGAGTAACGACGACGTGTCGCCGCTGACCAACT
CGTCGTCGTCCACAGGGGAGGGCATCACCGTCAAGGGGCTCATGTCAATC
GCGCCGACGGTGAAGGAGGAGCGCTGGGTGGCTCTGCCCCCTAACCCGGA
GTGGGTGGTCAAGAGCCCCTCGCCACAGCCCATCATGGCGCCCATACGGA
CAAAGCAGGCGTCCAAGGCGTCGCTGGAGGAGCAGAAAGCGCGACGAGAG
GAGGAGGAGAGGCGCCAGCAGGCAGAGGCAGAGGCGGCTCAGGTCCGGCA
GCAGACGCGGGAGCAGTGGGTGCCGCAGCTGCAGGTGCCGGTGGAGGTCG
AGGAGATCATGGACAGGCTGTCCCCGCTGCCCACCCTCTCTAATGAGATC
ATGGACAGGCCGTCGCCGCTGCCCATCCTCCCACGCGACCACCCGCTCGC
GGTGCAAGACCACCTGGCGGCGCGCAGCATCGCGTCCACCGCCCCCAGCA
TGGTCAGCGCCACCAGCGCCAGCTCCAACGCCTCCGGCAACTCCATCTTT
GACGTCGACAGCGTCGGCTACAGCCCGTGGCCAGAGAGCAGCATGCAGCT
GTCGGAGGATCAGAGCGTTGCGCACGCGAGTCAGGCCAGTAGCGTCTGGG
AGAGTGCCTGGATGGAGAAGAGGGCGGATTCGCGCGCGGCGAGTTCCAAG
GGGCTGTTCCGGTCGAACCGCACGGAGGACTCGCCGGGGAGCGATAGCAC
GGTGACGCATGACAGCAGCGACAAGGCGGACAGCCCGGGTACTGATAAGG
ACTGAAGGAGGGGAGGGGGTATGTATGGTATGGTGAGATTATGACGGGGG
TATGTATTGGCCAGGCGGAGGGGGTGAAGGCAGCCTATTACCCCCCTCGC
TAGGAATACAAGAGAATCGGGG

protein sequence of jgi.p|Trimin1|348995

>Trimin1|348995|estExt_Genemark1.C_Ctg_340017 ID=Trimin1|348995|estExt_Genemark1.C_Ctg_340017|Name=jgi.p|Trimin1|348995|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=485bp
MRSLGAGVTQSAYVEAIVAANAEAEVQGNIASATKAQLDAALKYVNQQQE
RWERELATTSGTNSLAPLAGTGLQARPFVDISTGSLYTPDAETLSRSVTA
LVFIAFVAVFAMATALAGWAWLFQERRMRRLLRAAMTDDLAKHSKPLTQT
PHGNKTLDGAGSKYAWHTGKDAATTPYNVTANPSSKSVGGMAANARLNAT
PAKSQQTNGPTPYDSPDRSSLYSSNDDVSPLTNSSSSTGEGITVKGLMSI
APTVKEERWVALPPNPEWVVKSPSPQPIMAPIRTKQASKASLEEQKARRE
EEERRQQAEAEAAQVRQQTREQWVPQLQVPVEVEEIMDRLSPLPTLSNEI
MDRPSPLPILPRDHPLAVQDHLAARSIASTAPSMVSATSASSNASGNSIF
DVDSVGYSPWPESSMQLSEDQSVAHASQASSVWESAWMEKRADSRAASSK
GLFRSNRTEDSPGSDSTVTHDSSDKADSPGTDKD*

mRNA from alignment at Contig_34:135761..139395+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8247 ID=mRNA_8247|Name=jgi.p|Trimin1|348995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3635bp|location=Sequence derived from alignment at Contig_34:135761..139395+ (Tribonema minus UTEX_B_3156 )
ATGCGATCGCTCGGCGCAGGTGTTACACAATCGGCATATGTGGAGGCAAT
CGTGGCGGCGAACGCGGAGGCTGAGGTTCAGGGGAACATAGCTTCGGCGA
CCAAGGCGCAGCTCGACGCGGCGCTCAAGTACGTGAACCAGCAGCAGGAG
CGATGGGAGCGGGAGCTGGCAACCACCAGCGGCACCAACTCTCTGGCACC
ATTGGCTGGCACAGGGCTTCAGGCCAGGCCGTTTGTGGACATCAGCACCG
GATCGCTCTACACCCCTGATGCGGAAACCCTGTCCAGATCGGTCACGGCG
CTGGTGTTCATCGCCTTCGTTGCGGTGTTCGCGATGGCGACCGCGCTGGC
GGGGTGGGCATGGCTGTTCCAGGAGCGGCGCATGCGGCGACTGCTGCGCG
CTGCCATGACGGACGACCTTGCCAAGCACTCCAAACCCCTGACGCAAACG
CCGCACGGTAACAAGACTCTCGACGGCGCTGGCAGCAAGTACGCATGGCA
CACCGGCAAGGACGCGGCGACGACGCCCTATAACGTAACTGCCAACCCCA
GTTCGAAATCGGTGGGGGGTATGGCGGCGAACGCGCGGCTCAATGCGACC
CCTGCCAAGTCTCAGCAGACGAATGGGCCCACGCCCTACGACTCGCCCGA
CAGGTCGAGTCTGTACTCGAGTAACGACGACGTGTCGCCGCTGACCAACT
CGTCGTCGTCCACAGGGGAGGGCATCACCGTCAAGGTGAGAGCGACACGC
AGTGCGTACCAGAAGAGCTGAGTCGAGTTCTTTCATACTGTCTGACAATG
CGCTTAGAGCACTGTCGTTGTGGCCAGCCAAGGCCATCACAGCGGGGTGG
GTGTAGAGTAGTGTGAGTTTTGGACCAAAGCCGTGGCGTCTTCAGTGAGT
GTTGCAGCGCTTTCGCAGTGCTCAACGTGCTGCGGCACTGCTCAGCAGCG
CTGTGGCAGTGTTCATCATGTTTTGTTGACAGCGCTCGGCAGCTGTTGTG
GCACCGCTCAGCAGTGCTGCTGCAGTGCTCAGCAGGTTGTTGACACAGTG
CAGCAGCCGTGTGGTGTCATTACTCAGCCACTACCCATCTGCACCTGCCA
TTGTGCGCCTAGTACTTACACTCACACCGTGCCACTGCTGTGATCTGACG
CTATGCATTGCTCCCTATGATTGCGAATGACAGGGGCTCATGTCAATCGC
GCCGACGGTGAAGGAGGAGCGCTGGGTGGCTCTGCCCCCTAACCCGGAGT
GGGTGGTCAAGAGCCCCTCGCCACAGGTATGTATATGCTGCAAAAATGCA
AGTTGAAGTTTTCTGTCGCGATGGTCCAGGGACCGTGTGCAACAGTTGAA
CAAAGTTGCTTTAGTTGCCGTACAGCACGCGGGATGACTGAGCATCGTAT
GCGGTAGCTGAAGTCAGGGCTCACGGCTTTGCTGTGTCACGTATCTTCGA
TGATGCTCAACGCAGGAGCTTATGATTGCCGGACTGCATGTACTTGCTGA
TTCCGATGGAATGCAAACTCTCTGCAGCTACACCACCATGGGTTGAATCC
TCCATTTCTGAGCTGTCGGTTGCATCGACGCTGAATGTGTTGCCACTGCA
TACGAGCTCCCTCTGGCATGATTGCCGCCAGTTTTGCATCTTGCAGCTAC
ATATACCTAACAAAGCTGCTAACCCTAATATGACCCCGATCCCTAAATGT
TGCAACAGCCCATCATGGCGCCCATACGGACAAAGCAGGCGTCCAAGGCG
TCGCTGGAGGAGCAGAAAGCGCGACGAGAGGAGGAGGAGAGGCGCCAGCA
GGCAGAGGTATGTATGTATGATGTCTATACAATATACCTACCTACTAGGG
TTAGCTGGTCAGTGTTGCCTATTAGGGTTAGGGGCAGGCCTGGATGAGGG
TCAGGGCGTACTGTAGGTTTAGAGGGGCGGCAGCGGGGCACAGGTGGGGT
ATCCCTACAGTATACCGGCATTACTAACAGATTGCTGTTAGAGTTAGGAG
TGGTATAGGACAAGTGTGGAGGTAAGTGGCACGGTTGGGGGTGATCGTCT
ATACCCACATTGAAGTTGGCGTGGTGAAACACTGTGTCTTGCACTTCACC
TCGCTGACGTCGCAACAGGAACGGCTAGTGCAGCATTGCTCAGCACGACG
CAAGGCCATTTGGCCACATATATACGCATTCGATCAGTGCTCAACATCCT
GCTTTGAGCCACGGTTTTGTGGTTCTGACTGGTATTGGGTTCACTGTGTC
ACATTTGGCATGGGCCTTGAGCACAAAAAGAGGAGGGGTCTGACCCCCCT
GTGTTGCTATGGCATCGCCTTCCCGTGCTACAGGCAGAGGCGGCTCAGGT
CCGGCAGCAGACGCGGGAGCAGTGGGTGCCGCAGCTGCAGGTGCCGGTGG
AGGTCGAGGTGAGTCGACACAGTGCTCGGCAGTTGCAGCATTGCTCAGTG
AGCGGAGCATTTGCTTGCAAGGGCAGCGGCGGTTGTCGGTGGAAGCGGGG
TGGGGTGGGAGGAGGCGGTCTGTGCGGTGCGGTTTGCACTCAGCATTGCA
CTGCAGCATTGCTCAGGACTCTGACTGCGGCTGAGCCTGGTCAACATGAC
CGATGCCCATGTCGTGATCGTTACAGCAGCGCTCAACGGGCAGTTGCAGC
AATTGCTCAGTAAGCTGAGCGTCGCCAGCCTGGTCAAGTATGACGGTTGC
TGTCTTCAACGGTGCCTACAGCATTGCTCAGCCATGTGCAGCATGCAGTA
AACTGAGTGGCACTCTTGCCATCGTTGCTGGTGACCGCACTGCGCGCGGA
AAGCACATACTCTGACTCTTATGCTCTGACCTGCGCACTTTGAGCAGTAA
TCAGTTTCATGACTGCACACTGCTGCGCGTAGGATCACACATGCACTGAC
TCACATTCTCTGACTCACTCGCTGACACCCAAAAACTCATACCCACCCTG
CAGGAGATCATGGACAGGCTGTCCCCGCTGCCCACCCTCTCTAATGTAAT
TGTCACACGCCTGACTAGCACACACTGACTAACGCGCAATCATACCTACC
TTACATCACCCTCTCATCCATTCATGATCCATTCATGATCCATTCACGAT
CATGCAGGAGATCATGGACAGGCCGTCGCCGCTGCCCATCCTCCCACGCG
ACCACCCGCTCGCGGTGCAAGACCACCTGGCGGCGCGCAGCATCGCGTCC
ACCGCCCCCAGCATGGTCAGCGCCACCAGCGCCAGCTCCAACGCCTCCGG
CAACTCCATCTTTGACGTCGACAGCGTCGGCTACAGCCCGTGGCCAGAGA
GCAGCATGCAGCTGTCGGAGGATCAGAGCGTTGCGCACGCGAGTCAGGCC
AGTAGCGTCTGGGAGAGTGCCTGGATGGAGAAGAGGGCGGATTCGCGCGC
GGCGAGTTCCAAGGGGCTGTTCCGGTCGAACCGCACGGAGGACTCGCCGG
GGAGCGATAGCACGGTGACGCATGACAGCAGCGACAAGGCGGACAGCCCG
GGTACTGATAAGGACTGAAGGAGGGGAGGGGGTATGTATGGTATGGTGAG
ATTATGACGGGGGTATGTATTGGCCAGGCGGAGGGGGTGAAGGCAGCCTA
TTACCCCCCTCGCTAGGAATACAAGAGAATCGGGG

Coding sequence (CDS) from alignment at Contig_34:135761..139395+

>mRNA_8247 ID=mRNA_8247|Name=jgi.p|Trimin1|348995|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1455bp|location=Sequence derived from alignment at Contig_34:135761..139395+ (Tribonema minus UTEX_B_3156 )
ATGCGATCGCTCGGCGCAGGTGTTACACAATCGGCATATGTGGAGGCAAT
CGTGGCGGCGAACGCGGAGGCTGAGGTTCAGGGGAACATAGCTTCGGCGA
CCAAGGCGCAGCTCGACGCGGCGCTCAAGTACGTGAACCAGCAGCAGGAG
CGATGGGAGCGGGAGCTGGCAACCACCAGCGGCACCAACTCTCTGGCACC
ATTGGCTGGCACAGGGCTTCAGGCCAGGCCGTTTGTGGACATCAGCACCG
GATCGCTCTACACCCCTGATGCGGAAACCCTGTCCAGATCGGTCACGGCG
CTGGTGTTCATCGCCTTCGTTGCGGTGTTCGCGATGGCGACCGCGCTGGC
GGGGTGGGCATGGCTGTTCCAGGAGCGGCGCATGCGGCGACTGCTGCGCG
CTGCCATGACGGACGACCTTGCCAAGCACTCCAAACCCCTGACGCAAACG
CCGCACGGTAACAAGACTCTCGACGGCGCTGGCAGCAAGTACGCATGGCA
CACCGGCAAGGACGCGGCGACGACGCCCTATAACGTAACTGCCAACCCCA
GTTCGAAATCGGTGGGGGGTATGGCGGCGAACGCGCGGCTCAATGCGACC
CCTGCCAAGTCTCAGCAGACGAATGGGCCCACGCCCTACGACTCGCCCGA
CAGGTCGAGTCTGTACTCGAGTAACGACGACGTGTCGCCGCTGACCAACT
CGTCGTCGTCCACAGGGGAGGGCATCACCGTCAAGGGGCTCATGTCAATC
GCGCCGACGGTGAAGGAGGAGCGCTGGGTGGCTCTGCCCCCTAACCCGGA
GTGGGTGGTCAAGAGCCCCTCGCCACAGCCCATCATGGCGCCCATACGGA
CAAAGCAGGCGTCCAAGGCGTCGCTGGAGGAGCAGAAAGCGCGACGAGAG
GAGGAGGAGAGGCGCCAGCAGGCAGAGGCAGAGGCGGCTCAGGTCCGGCA
GCAGACGCGGGAGCAGTGGGTGCCGCAGCTGCAGGTGCCGGTGGAGGTCG
AGGAGATCATGGACAGGCTGTCCCCGCTGCCCACCCTCTCTAATGAGATC
ATGGACAGGCCGTCGCCGCTGCCCATCCTCCCACGCGACCACCCGCTCGC
GGTGCAAGACCACCTGGCGGCGCGCAGCATCGCGTCCACCGCCCCCAGCA
TGGTCAGCGCCACCAGCGCCAGCTCCAACGCCTCCGGCAACTCCATCTTT
GACGTCGACAGCGTCGGCTACAGCCCGTGGCCAGAGAGCAGCATGCAGCT
GTCGGAGGATCAGAGCGTTGCGCACGCGAGTCAGGCCAGTAGCGTCTGGG
AGAGTGCCTGGATGGAGAAGAGGGCGGATTCGCGCGCGGCGAGTTCCAAG
GGGCTGTTCCGGTCGAACCGCACGGAGGACTCGCCGGGGAGCGATAGCAC
GGTGACGCATGACAGCAGCGACAAGGCGGACAGCCCGGGTACTGATAAGG
ACTGA