mRNA_8209 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: A0A835YY83_9STRA (Putative serine esterase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY83_9STRA) HSP 1 Score: 584 bits (1506), Expect = 1.160e-210 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1
Query: 1 MAYLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYERGVLGGRLSPINFITFGTPHLGTLTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMCNREYVAALGRFAVRKLYANVRFDSMELYSASIRLDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDIYNPKGLSPHKDLVVATVWLNKEGMDIVRHCVDTALT 876
MAYLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYERGVLGGRLSPINFITFGTPHLGTLTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMCNREYVAALGRFAVRKLYANVRFDSMELYSASIRLDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDIYNPKGLSPHKDLVVATVWLNKEGMDIVRHCVDTALT
Sbjct: 1 MAYLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYERGVLGGRLSPINFITFGTPHLGTLTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMCNREYVAALGRFAVRKLYANVRFDSMELYSASIRLDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDIYNPKGLSPHKDLVVATVWLNKEGMDIVRHCVDTALT 292
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: D7G8V8_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V8_ECTSI) HSP 1 Score: 223 bits (569), Expect = 5.930e-65 Identity = 132/354 (37.29%), Postives = 185/354 (52.26%), Query Frame = 1
Query: 1 MAYLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYERGVLGGRLSPINFITFGTPHLGTLTSAAGVMGALIEGRTSAQLKLKDGD------------ERFG--------------------------------------------RPPLLVEMCNREYVAALGRFAVRKLYANVRFD-SMELYSASIRLDDPYMGLSDMQLAARITPQYTHVLVDAE-------DHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDIYNPKGLSPHKDLVVATVWLNKEGMDIVRHCVDTA 870
M YL I SR+G+ ++V ++ N PFKTLDG+ +GG+R +EEVM ++ + +A ISF+ HG+GG+Y R+AL+ L + GV R+S ++FIT GTPHLG+L S G+ G +++ T QL KD D E +G RPP+L M +++A L F R LYANV+ D ++E SAS+R+DDPY+ + D L+ +P YTHV+ ++ D A A G F LA + +WE AQ L +GW RVDI+NP+G+SP+KDLVV WLN EG DIVRH VD +
Sbjct: 204 MKYLANSISSRHGSSAHVKIAMCNTAPFKTLDGVAKGGTRLYEEVMQTIDG--VPSASYISFIGHGLGGVYARYALRLLNDAGVFSDRVSGMHFITLGTPHLGSLLSGGGMAGRVMDNETKEQLFFKDTDMRRDGDNGGVSREEYGVGGSAGAGGARGGGSGYYPGAPPSYMGAEGVGRNMNSNHSLGGSRPPVLARMTGEDFLAPLRMFQRRVLYANVKMDGTVEYPSASVRIDDPYVYVPDTDLSRMCSPHYTHVMANSSKGNLGGMDPAVARGPGG--------GFPTALASSAPESGMWEIMAQVLDSLGWERVDIFNPEGMSPYKDLVVVNQWLNSEGTDIVRHLVDNS 547
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: A0A6H5KZX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 4.070e-31 Identity = 71/164 (43.29%), Postives = 95/164 (57.93%), Query Frame = 1
Query: 403 RPPLLVEMCNREYVAALGRFAVRKLYANVRFD-SMELYSASIRLDDPYMGLSDMQLAARITPQYTHVLVDAE-------DHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDIYNPKGLSPHKDLVVATVWLNKEGMDIVRHCVDTA 870
RPP+L M +++A L F R LYANV+ D ++E SAS+R+DDPY+ + D L+ +P YTHV+ ++ D A A G F LA + +WE AQ L +GW RVDI+NP+G+SP+KDLVV WLN EG DIVRH VD +
Sbjct: 81 RPPVLARMTGEDFLAPLRMFQRRVLYANVKMDGTVEYPSASVRIDDPYVYVPDTDLSRMCSPHYTHVMANSSKGNLGGMDPAVARGPGG--------GFPTALASAAPESGMWEIMAQVLDSLGWERVDIFNPEGMSPYKDLVVVNQWLNSEGTDIVRHLVDNS 236
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: A0A6D2L6X3_9BRAS (DUF676 domain-containing protein n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2L6X3_9BRAS) HSP 1 Score: 127 bits (320), Expect = 2.500e-30 Identity = 105/321 (32.71%), Postives = 158/321 (49.22%), Query Frame = 1
Query: 10 LGTQIDSRYGADSYV---------YLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYER-GVLGGRLSPINFITFGTPHLGT--------------LTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMC----NREYVAALGRFAVRKLYANVRFDSMELY-SASIR----LDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDI--YNPKG-LSPHKDLVVATVWLNKEGMDIVRHCVD 864
+G+ D +Y A+ +V + SE+N+ T DG+D+ G R EV+++++ RKISFVAH +GGL R+A+ +LYE+ G + G L PINFITF TPHLG+ L A L GRT L L D D+ G+PPLL+ M + ++++AL F R YANV FD M + ++SIR L +P + +D P Y H++ + + + G+ Q VV + E+ L + W RVD+ +N K + H + V T WL+ +G D+V H +D
Sbjct: 104 IGSSADWKYAAEQFVKKFPDKVLVHRSESNSATL-TFDGVDKMGERLANEVVSVIKHR--NGLRKISFVAHSLGGLVARYAIGKLYEQPGEIAG-LEPINFITFATPHLGSRGHRQFPILCGLPFLERKASETAHLAAGRTGKHLFLVDKDD--GKPPLLIRMATDSDDLKFISALHAFKRRVAYANVNFDYMVGWRTSSIRRPNELPEPNLLATD--------PSYPHIVYVEQGNV--DNGSCQSTSTVVTTDE--------SNDLEEEMLHGLGQLSWERVDVSFHNSKQRYAAHSTIQVKTYWLHSDGKDVVFHMMD 400
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: A0A068UWL3_COFCA (DUF676 domain-containing protein n=5 Tax=Coffea TaxID=13442 RepID=A0A068UWL3_COFCA) HSP 1 Score: 124 bits (312), Expect = 8.350e-29 Identity = 100/329 (30.40%), Postives = 150/329 (45.59%), Query Frame = 1
Query: 4 AYLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYE--------------RGVLGGRLSPINFITFGTPHLGT--------------LTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMCNR----EYVAALGRFAVRKLYANVRFDSMELY-SASIRLDD-----PYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGA-QALMDIGWLRVDIYNPKGLSP---HKDLVVATVWLNKEGMDIVRHCVD 864
AY+ ++ R G + +Y S N+ KT GID G R +EVM +V + T +KISFVAH +GGL+ R+A+ LY +G++ G L PINFIT TPHLG L A + + GRT +QL L DG + +PPLL+ M + ++++ALG F R LYANV +D M + ++SIR + P L Q + +Y + + H A ++ A P + L I E+ + L +GW +VD+ P H ++ V W + G ++ H D
Sbjct: 137 AYVEAELKKRLGRNFLIYASSCNSYT-KTFTGIDGAGKRLADEVMQVVRKQ--ETLKKISFVAHSLGGLFARYAISVLYTPNNSGHPYDLSASTKGLIAG-LEPINFITLATPHLGVRGNKQLPFLLGVPFLEKIAAPLAPIFIGRTGSQLFLTDG--KPNKPPLLLRMASDCEDGKFISALGAFRCRVLYANVSYDHMVGWRTSSIRRETELVKPPQRSLDGYQHVVDV--EYCPPVSSSSPHFPPEAAKAKE----AAQNAPTMQNTLEYHEIVEEEMIRGLQQLGWKKVDVSFHSAFWPFFAHNNIHVKNEWFHNAGAGVIAHVAD 453
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: A0A087GGT4_ARAAL (DUF676 domain-containing protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087GGT4_ARAAL) HSP 1 Score: 123 bits (308), Expect = 1.020e-28 Identity = 106/332 (31.93%), Postives = 153/332 (46.08%), Query Frame = 1
Query: 10 LGTQIDSRYGADSYV---------YLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYER------------GVLGGRLSPINFITFGTPHLGT--------------LTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMC----NREYVAALGRFAVRKLYANVRFDSMELY-SASIR----LDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDI--YNPKG-LSPHKDLVVATVWLNKEGMDIVRHCVD 864
+G+ D +Y A+ +V + SE+N T DG+D G R EV+++++ +KISFVAH +GGL R+A+ +LY++ G + G L PINFITF TPHLG L A L GRT L L D D+ G PPLL+ M + ++++AL F R YANV FD M + ++SIR L P + +D P Y H++ +H N G+ Q VV L ++ D L + W RVD+ +N K H + V T WL+ +G D+V H +D
Sbjct: 79 IGSSADWKYAAEQFVNKFPDKVLVHRSESNCATL-TFDGVDMMGQRLANEVLSVIKHRS--GLKKISFVAHSLGGLVARYAIGKLYQQPNSLDSPSKAKGGEIAG-LEPINFITFATPHLGVRGHRQFPILCGLPFLERTASQTAHLAAGRTGKHLFLVDNDD--GNPPLLIRMATDSGDLKFISALHAFKRRVAYANVNFDYMVGWRTSSIRRPSELPKPNLLATD--------PNYPHIVY--VEHGNVNNGSCQSTSTVVTEENTDLEEEMID---------GLGQLPWERVDVSFHNSKQRYVAHNTIQVKTYWLHSDGKDVVFHMMD 385
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: V4P5F5_EUTSA (DUF676 domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4P5F5_EUTSA) HSP 1 Score: 123 bits (308), Expect = 1.490e-28 Identity = 107/337 (31.75%), Postives = 153/337 (45.40%), Query Frame = 1
Query: 10 LGTQIDSRYGADSYV---------YLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYE--------------RGVLGGR---LSPINFITFGTPHLGT--------------LTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMC----NREYVAALGRFAVRKLYANVRFDSMELY-SASIR----LDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDI--YNPKG-LSPHKDLVVATVWLNKEGMDIVRHCVD 864
+G+ D +Y A+ +V + SE+N+ T DG+D G R EV+++++ RKISFVAH +GGL R+A+ +LYE + V GG L P+NFITF TPHLG+ L A L GRT L L D D+ G PPLL+ M N ++++AL F R YANV FD M + ++SIR L P + +D P Y H++ +H + G+ Q V L E+ L + W RVD+ +N K H + V T WL+ +G D+V H +D
Sbjct: 99 IGSSADWKYAAEQFVKKFPDKVLVHRSESNSATM-TFDGVDMMGERLASEVLSVIKNRS--GLRKISFVAHSLGGLVARYAIGKLYEQLGEANSLESPSKAKSVTGGEIAGLEPMNFITFATPHLGSRGHRQFPILCGLPFLERTASQTAHLAAGRTGKHLFLVDNDD--GHPPLLIRMATDSDNLKFISALHAFKRRVAYANVNFDYMVGWRTSSIRRPNELPKPNLLATD--------PNYPHIVY--VEHGNVDNGSCQITSTAVTDENTDLE---------EEMIHGLAQLSWERVDVSFHNSKQRYVAHNTIQVKTYWLHSDGKDVVFHMMD 411
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: UPI00053F3B50 (uncharacterized protein LOC104900483 isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3B50) HSP 1 Score: 122 bits (305), Expect = 6.060e-28 Identity = 102/333 (30.63%), Postives = 153/333 (45.95%), Query Frame = 1
Query: 7 YLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLY------------------ERGVLGGRLSPINFITFGTPHLGT--------------LTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMC----NREYVAALGRFAVRKLYANVRFDSMELY-SASIRLDDPYMGLSDMQLAARITPQYTHVLVDAE-----DHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGA-QALMDIGWLRVDIYNPKGLSP---HKDLVVATVWLNKEGMDIVRHCVDT 867
Y ++ R G + +Y S +N+ KT GID G R EEV +V+R + +KISF+AH +GGL+ R+A+ LY + GV+ G L PINFIT +PHLG L A + ++ GRT +QL L DG + RPPLL++M + ++++ALG F R +YANV FD M + ++SIR +D L Y HV VD E A+ + + A P + + E+ Q L +GW +VD+ + P H ++ V W + G +V+H D+
Sbjct: 115 YFEAELKKRLGRNFLIYASSSNSYT-KTFGGIDGAGKRLAEEVRQIVQRT--ESLKKISFLAHSLGGLFARYAVAVLYTPNNLGDGDIDDTLGRSMKHGVIAG-LEPINFITLASPHLGVRGRKQLPLLWGLPFLEKLAPPLASVFVGRTGSQLFLTDG--KPNRPPLLLKMATDCEDGKFISALGAFKCRIIYANVSFDHMVGWRTSSIRREDELPKPPQRSLDG-----YKHV-VDVEYCPPVSSEGAHFAPEVAKAKEAAQTEPSTQNTVEYHELAEEEMMQGLQRLGWKKVDVSFHSAVWPFFAHNNIHVKNEWFHNAGAGVVKHVADS 435
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: UPI000CD58543 (uncharacterized protein LOC17880918 n=1 Tax=Capsella rubella TaxID=81985 RepID=UPI000CD58543) HSP 1 Score: 119 bits (299), Expect = 2.900e-27 Identity = 107/338 (31.66%), Postives = 155/338 (45.86%), Query Frame = 1
Query: 10 LGTQIDSRYGADSYV---------YLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTA-RKISFVAHGIGGLYVRFALKRLY--------------ERGVLGGR---LSPINFITFGTPHLGT--------------LTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMC----NREYVAALGRFAVRKLYANVRFDSMELY-SASIR----LDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGAQALMDIGWLRVDI--YNPKG-LSPHKDLVVATVWLNKEGMDIVRHCVD 864
+G+ D +Y A+ +V + SE+N+ T DG+D+ G R EV+ +V++ RT +KISFVAH +GGL R+A+ +LY ++ GG L P+NFITF TPHLG+ L A L GRT L L D D+ G PPLL+ M + ++++AL F R YANV FDSM + ++SIR L P + +D P Y H++ +H G+ VV L E+ L + W RVD+ +N K H + V T WL+ +G D+V H +D
Sbjct: 102 VGSAADWKYAAEQFVKKFPDKVLVHRSESNSATL-TFDGVDKMGERLANEVLAVVKK---RTGLKKISFVAHSLGGLVARYAIGKLYGQPGEVDSLDSPSKDKSARGGEIAGLEPMNFITFATPHLGSRGHRQFPILCGLPFLERTASQTAHLAAGRTGKHLFLVDNDD--GNPPLLIRMATDCDDLKFISALHVFKRRVAYANVNFDSMVGWRTSSIRRPNELPKPNLLATD--------PNYPHIVY--VEHGNVENGSCGSTSTVVTEQNTDLE---------EEMIHGLSQLSWERVDVSFHNSKQRYVAHSTIQVKTYWLHSDGKDVVFHMMD 414
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Match: S8CLQ4_9LAMI (DUF676 domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CLQ4_9LAMI) HSP 1 Score: 119 bits (297), Expect = 3.500e-27 Identity = 94/329 (28.57%), Postives = 145/329 (44.07%), Query Frame = 1
Query: 7 YLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVERPMLRTARKISFVAHGIGGLYVRFALKRLYE--------RGVLGGRLSPINFITFGTPHLGT--------------LTSAAGVMGALIEGRTSAQLKLKDGDERFGRPPLLVEMCNR----EYVAALGRFAVRKLYANVRFDSM------------ELYSASIRLDDPYMGLSDMQLAARITPQYTHVLVDAEDHAAANAGAGQQQRQVVAPFRPQLAGQLSDRRIWEDGA-QALMDIGWLRVDIYNPKGLSP---HKDLVVATVWLNKEGMDIVRHCVDT 867
Y +++ + G +Y S +N KT G+D G R EVM +V++ + +KISF+AH +GGL+ R+A+ LY+ RG + G L +NFIT TPHLG L A + + GRT QL L DG+ PPLL++M + +++++L F R LYANV +D M EL+ R D Y + D++ A + + +A + + A P + + I E+ L +GW +VD+ L P H ++ V W + G +V H VDT
Sbjct: 60 YFESELKRQLGKKFMIYASSSNTRT-KTFTGVDGSGKRLAAEVMQVVKKT--ESLKKISFLAHSLGGLFARYAVAVLYDPNVSSSLSRGSIAG-LEAVNFITLATPHLGVRGNKQLPFLLGLSFLERLAAPLAPIFTGRTGKQLFLTDGEP--SNPPLLLKMASDCDDGKFISSLAAFKCRVLYANVSYDHMVGWRTSSIRRENELFKPPTRSLDGYKHVVDVEYCAPLLSERPRFPPEAA------------KAKEAAQNDPNILSTIGYHEIMEEEMIHGLQSLGWKKVDVSFHSALWPFSAHNNIHVKNEWFHNAGAGVVAHVVDT 370 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350000 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8209 ID=mRNA_8209|Name=jgi.p|Trimin1|350000|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=916bp|location=Sequence derived from alignment at Contig_53:664741..668233+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCCTACCTGGGCACGCAGATTGACTCACGATACGGCGCTGACTCATAback to top protein sequence of jgi.p|Trimin1|350000 >Trimin1|350000|estExt_Genemark1.C_Ctg_530081 ID=Trimin1|350000|estExt_Genemark1.C_Ctg_530081|Name=jgi.p|Trimin1|350000|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp MAYLGTQIDSRYGADSYVYLSEANAGPFKTLDGIDEGGSRFFEEVMNLVEback to top mRNA from alignment at Contig_53:664741..668233+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8209 ID=mRNA_8209|Name=jgi.p|Trimin1|350000|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3493bp|location=Sequence derived from alignment at Contig_53:664741..668233+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_53:664741..668233+ >mRNA_8209 ID=mRNA_8209|Name=jgi.p|Trimin1|350000|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_53:664741..668233+ (Tribonema minus UTEX_B_3156 )back to top |