mRNA_8188 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155387
Unique NamemRNA_8188
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: A0A835YQ17_9STRA (G-patch domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ17_9STRA)

HSP 1 Score: 244 bits (624), Expect = 6.500e-82
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPRAAVASASSNDTEKFLTRKQLERLKERERRK 378
            FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPRAAVASASSNDTEKFLTRKQLERLKERERRK
Sbjct:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPRAAVASASSNDTEKFLTRKQLERLKERERRK 126          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: UPI0018CDD1DD (G patch domain and ankyrin repeat-containing protein 1 homolog n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CDD1DD)

HSP 1 Score: 79.3 bits (194), Expect = 5.800e-15
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPRA---------AVASASSNDTEKFLTRKQLERLKERE 369
            F C VC    T T+ REH++ST+H F+ K +   +   K N+     N G +++ K GW +++GLGP+ + GRL PIKTV ++ RTGLG  + VPR          AV       T+K  T+  ++R K+RE
Sbjct:  210 FFCGVCRKQFTDTSLREHQTSTVHQFNTKSELPINKLQKFNI--PPKNRGLQLMVKQGWDKESGLGPT-QSGRLYPIKTVLRKQRTGLGIKQDVPRVTHFGAFDLNAVKHKPMFSTKKSHTKNDMKREKQRE 338          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: A0A1I8MKL9_MUSDO (G-patch domain-containing protein n=1 Tax=Musca domestica TaxID=7370 RepID=A0A1I8MKL9_MUSDO)

HSP 1 Score: 75.9 bits (185), Expect = 1.030e-13
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVP 285
            F C +C+ T   TT REHE+ST+H F+ K  + ++   K N+     N G +++ K GW +++GLGP+ + GRL P+KTV ++ RTGLG ++Q P
Sbjct:  205 FYCEICKRTFAETTKREHETSTVHQFNVKAPTTSNKLQKFNI--PPRNKGLQLMVKQGWDKESGLGPT-QTGRLYPVKTVIRKQRTGLG-IEQDP 295          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: A0A8K1FIN8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIN8_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 1.060e-13
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLG 267
            + C  C+  +  T+  +H+ ST H+      + T T     + L E+N GY+++  +GW +DTGLGP  +QGR+EPI T+ K DR GLG
Sbjct:    2 YFCAACKLYVKETSVSDHDQSTAHLL-----ASTRTPSLRKVWLPESNRGYQMMMNMGWKEDTGLGP-REQGRVEPIATILKNDRAGLG 84          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: A0A1I8Q577_STOCA (G-patch domain-containing protein n=1 Tax=Stomoxys calcitrans TaxID=35570 RepID=A0A1I8Q577_STOCA)

HSP 1 Score: 71.6 bits (174), Expect = 3.520e-12
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVP 285
            F C +C+ T + TT + H SST+H F+ K     +   K N+  +  N G  ++ K GW +++GLGPS + GRL P+KTV ++ RTGLG ++Q P
Sbjct:  207 FYCDICQRTFSETTRKGHMSSTVHQFNTKSSLSDNRLQKFNI--SARNKGLLLMMKQGWDRESGLGPS-QSGRLYPVKTVIRKQRTGLG-IEQEP 297          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: A0A6M2DGB7_9NEOP (Putative major histocompatibility complex protein bat4 n=1 Tax=Xenopsylla cheopis TaxID=163159 RepID=A0A6M2DGB7_9NEOP)

HSP 1 Score: 71.2 bits (173), Expect = 4.060e-12
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLG 267
            F C  C       T + HE+ST+H+FH K   G  + P   +    +N GY+IL + GW Q TGLGPS + GR  PIKTV +++RTGLG
Sbjct:  189 FFCEPCNEHFKNCTIKSHETSTLHLFHTK---GVISHPYFGI--PASNKGYQILLRNGWNQKTGLGPS-EDGRKFPIKTVIRENRTGLG 271          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: A0A484BQ40_DRONA (G-patch domain-containing protein n=3 Tax=mojavensis species complex TaxID=198037 RepID=A0A484BQ40_DRONA)

HSP 1 Score: 69.3 bits (168), Expect = 2.300e-11
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLH---LTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPRAAVASASSNDT 321
            F C +C+   + +T R+H++ST+H F+ K      + P   LH   ++  N G +++ K GW ++ GLGP  + GRL P+KTV ++ RTGLG   Q P A V    + DT
Sbjct:  199 FYCELCQREYSESTWRDHQTSTVHRFNMK------SLPPHRLHKFNISARNRGLQLMVKQGWDREHGLGPQ-QNGRLYPVKTVLRKQRTGLGI--QQPPARVTHFEAFDT 299          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: UPI0018A17C23 (G patch domain and ankyrin repeat-containing protein 1 homolog n=3 Tax=suzukii subgroup TaxID=32353 RepID=UPI0018A17C23)

HSP 1 Score: 68.2 bits (165), Expect = 5.860e-11
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLH---LTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPR 288
            F C +C+     T   +H++ST+H F+ K        P   LH   ++  N G +++ K GW Q+ GLGPS K GRL P+KTV ++ RTGLG  +Q  R
Sbjct:  198 FYCEICKRDYKETPWPDHQTSTVHQFNLK------ALPAHKLHKFNISAKNRGLQLMVKQGWDQEHGLGPS-KSGRLYPVKTVLRKQRTGLGIEQQPAR 289          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: UPI001F0609FA (G patch domain and ankyrin repeat-containing protein 1 homolog n=2 Tax=Lucilia TaxID=7374 RepID=UPI001F0609FA)

HSP 1 Score: 67.8 bits (164), Expect = 8.260e-11
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPR 288
            F C +C+     T+  +H++ST+H F+ K     +   K N+     N G +++ K GW +++GLGPS + GRL P+KTV ++ RTGLG  ++  R
Sbjct:  201 FFCEICQENFKETSQVKHQTSTIHQFNMKSNLPQNKLQKFNI--PARNKGLQLMVKQGWDKESGLGPS-QAGRLYPVKTVIRKQRTGLGIEQESAR 293          
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Match: A0A0L0BTT0_LUCCU (Putative G patch domain and ankyrin repeat-containing protein 1 n=1 Tax=Lucilia cuprina TaxID=7375 RepID=A0A0L0BTT0_LUCCU)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-10
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAGYRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPR 288
            F C +C+     T+  +H++ST+H F+ K     +   K N+     N G +++ K GW +++GLGPS + GRL P+KTV ++ RTGLG  ++  R
Sbjct:  201 FFCEICQENFKETSQVKHQTSTIHQFNMKSNLPQNKLQKFNI--PARNKGLQLMVKQGWDKESGLGPS-QAGRLYPVKTVIRKQRTGLGIEQESAR 293          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155387 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ17_9STRA6.500e-82100.00G-patch domain-containing protein (Fragment) n=1 T... [more]
UPI0018CDD1DD5.800e-1537.88G patch domain and ankyrin repeat-containing prote... [more]
A0A1I8MKL9_MUSDO1.030e-1342.11G-patch domain-containing protein n=1 Tax=Musca do... [more]
A0A8K1FIN8_PYTOL1.060e-1339.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1I8Q577_STOCA3.520e-1241.05G-patch domain-containing protein n=1 Tax=Stomoxys... [more]
A0A6M2DGB7_9NEOP4.060e-1244.94Putative major histocompatibility complex protein ... [more]
A0A484BQ40_DRONA2.300e-1137.27G-patch domain-containing protein n=3 Tax=mojavens... [more]
UPI0018A17C235.860e-1139.39G patch domain and ankyrin repeat-containing prote... [more]
UPI001F0609FA8.260e-1136.46G patch domain and ankyrin repeat-containing prote... [more]
A0A0L0BTT0_LUCCU1.010e-1036.46Putative G patch domain and ankyrin repeat-contain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_53contigContig_53:472089..472466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155387|gw1.53.151.1
Preferred nameGPANK1
Descriptionnucleic acid binding
COG categoryS
Max annot lvl33208|Metazoa
EggNOG OGsKOG2384@1|root,KOG2384@2759|Eukaryota,39U7G@33154|Opisthokonta,3BHX5@33208|Metazoa,3CXBZ@33213|Bilateria,48BQS@7711|Chordata
Evalue2.07e-15
Seed ortholog7739.XP_002599269.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionG-patch domain
Ec32 orthologEc-24_002800.1
TranscriptId155709
TrackFilteredModels1
ProteinId155387
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155387gene_8188Tribonema minus UTEX_B_3156 geneContig_53 472089..472466 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8188_1exon_8188_1Tribonema minus UTEX_B_3156 exonContig_53 472089..472466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8188CDS_8188Tribonema minus UTEX_B_3156 CDSContig_53 472089..472466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155387Trimin1|155387|gw1.53.151.1Tribonema minus UTEX_B_3156 polypeptideContig_53 472089..472466 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8188 ID=mRNA_8188|Name=jgi.p|Trimin1|155387|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_53:472089..472466- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCATGTGTCTCGTGTGCGAATCTACCATCACAGCCACGACATCCCGAGA
GCATGAATCGTCGACCATGCATATATTCCACCAGAAGCTGCAGAGCGGCA
CCAGCACGGCACCAAAAGCCAATCTGCACCTGACTGAAACCAACGCCGGC
TACAGAATTCTCAGCAAGCTAGGCTGGACACAAGACACAGGTTTGGGACC
TTCGCACAAGCAAGGTCGCCTGGAACCTATCAAAACGGTGTTCAAGCAAG
ATCGGACAGGCCTTGGCGCTGTGAAGCAAGTGCCCCGGGCCGCTGTGGCC
TCGGCTTCAAGCAACGACACTGAGAAGTTTTTGACGCGGAAGCAGTTGGA
GCGGCTGAAGGAGCGCGAAAGGAGGAAG
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protein sequence of jgi.p|Trimin1|155387

>Trimin1|155387|gw1.53.151.1 ID=Trimin1|155387|gw1.53.151.1|Name=jgi.p|Trimin1|155387|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=126bp
FMCLVCESTITATTSREHESSTMHIFHQKLQSGTSTAPKANLHLTETNAG
YRILSKLGWTQDTGLGPSHKQGRLEPIKTVFKQDRTGLGAVKQVPRAAVA
SASSNDTEKFLTRKQLERLKERERRK
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mRNA from alignment at Contig_53:472089..472466-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8188 ID=mRNA_8188|Name=jgi.p|Trimin1|155387|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_53:472089..472466- (Tribonema minus UTEX_B_3156 )
TTCATGTGTCTCGTGTGCGAATCTACCATCACAGCCACGACATCCCGAGA GCATGAATCGTCGACCATGCATATATTCCACCAGAAGCTGCAGAGCGGCA CCAGCACGGCACCAAAAGCCAATCTGCACCTGACTGAAACCAACGCCGGC TACAGAATTCTCAGCAAGCTAGGCTGGACACAAGACACAGGTTTGGGACC TTCGCACAAGCAAGGTCGCCTGGAACCTATCAAAACGGTGTTCAAGCAAG ATCGGACAGGCCTTGGCGCTGTGAAGCAAGTGCCCCGGGCCGCTGTGGCC TCGGCTTCAAGCAACGACACTGAGAAGTTTTTGACGCGGAAGCAGTTGGA GCGGCTGAAGGAGCGCGAAAGGAGGAAG
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Coding sequence (CDS) from alignment at Contig_53:472089..472466-

>mRNA_8188 ID=mRNA_8188|Name=jgi.p|Trimin1|155387|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=378bp|location=Sequence derived from alignment at Contig_53:472089..472466- (Tribonema minus UTEX_B_3156 )
TTCATGTGTCTCGTGTGCGAATCTACCATCACAGCCACGACATCCCGAGA
GCATGAATCGTCGACCATGCATATATTCCACCAGAAGCTGCAGAGCGGCA
CCAGCACGGCACCAAAAGCCAATCTGCACCTGACTGAAACCAACGCCGGC
TACAGAATTCTCAGCAAGCTAGGCTGGACACAAGACACAGGTTTGGGACC
TTCGCACAAGCAAGGTCGCCTGGAACCTATCAAAACGGTGTTCAAGCAAG
ATCGGACAGGCCTTGGCGCTGTGAAGCAAGTGCCCCGGGCCGCTGTGGCC
TCGGCTTCAAGCAACGACACTGAGAAGTTTTTGACGCGGAAGCAGTTGGA
GCGGCTGAAGGAGCGCGAAAGGAGGAAG
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