mRNA_8158 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167816
Unique NamemRNA_8158
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: A0A835YPN8_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN8_9STRA)

HSP 1 Score: 536 bits (1380), Expect = 1.310e-192
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1 
Query:    1 MHVPAARRTPAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQKDVADKHNIIE 792
            MHVPAARRTPAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQKDVADKHNIIE
Sbjct:    1 MHVPAARRTPAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQKDVADKHNIIE 264
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BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: A0A7S4K6T7_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K6T7_GUITH)

HSP 1 Score: 205 bits (521), Expect = 1.070e-61
Identity = 112/242 (46.28%), Postives = 148/242 (61.16%), Query Frame = 1 
Query:   37 EAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQK 762
            E EHV  VYD IA H+S TRYKPWPRVA +L +  + G L+AD+GCGNGKYL   P+ V+++G D S  L+  C     G   ++C AD ++LPYR   FDAAISIAV+HHLST +RR AA  E++R+L+ GG  L+Y WA EQ +   + F+ QD  +PW   D        A  ++  GA+T          E + +TV+ RY HLF EGE E L    GG  +V S+YD  NWC V++K
Sbjct:   70 EDEHVHGVYDAIARHFSHTRYKPWPRVASFLQS-LEDGALVADVGCGNGKYLQVNPK-VLMMGSDRSRGLVECCQ----GMGHDVCLADNLMLPYRSDSFDAAISIAVIHHLSTEERRAAAVREILRILKRGGQALIYNWAMEQ-QGRRKGFTQQDNFIPWQLQDKF------AEKQKGEGAETE---------ESQQNTVYNRYYHLFVEGESEKLMELAGGNEIVDSFYDHENWCVVIRK 289
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BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: A0A7S2R7G3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R7G3_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.750e-59
Identity = 110/247 (44.53%), Postives = 152/247 (61.54%), Query Frame = 1 
Query:   28 PAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRS-FSHQDMLVPWHFA-DSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQK 762
            P +E EHV+ VY+ +A+ W  TRYK WP+VA ++++  K G  I D+GCGNGK L         +GCD S++L+ +     AG+  E   AD + LP+RDG FDA +SIAVLHH+S+  RR+   +E +R+++PGG  L YAWAQEQ +  SR  F  QD+LVP+H   D  +R+ A+             Q  H      K++ VFQRYCH++ +GE+E LF  +  C VV SYYDC NWC VV+K
Sbjct:  189 PELEIEHVQKVYNQVASQWHGTRYKSWPKVAAFINSLHK-GSFIGDIGCGNGKNLPACNSVGYGIGCDFSSSLVDI----SAGQGFEAFVADNLHLPFRDGIFDAVLSIAVLHHISSEARRVRLVSETMRIVKPGGRGLFYAWAQEQDDGVSRHVFGEQDVLVPFHARKDKTKREQAE-------------QVSHAREDSSKNAFVFQRYCHVYVKGELEGLFACLDDCVVVDSYYDCGNWCVVVEK 417
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BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: L1JQV4_GUITC (Methyltransf_11 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQV4_GUITC)

HSP 1 Score: 196 bits (497), Expect = 6.730e-59
Identity = 109/242 (45.04%), Postives = 141/242 (58.26%), Query Frame = 1 
Query:   37 EAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQK 762
            E EHV  VYD IA H+S TRYKPWPRVA +L +  + G L+AD+GCGNGKYL   P+ V+++G D S  L+  C     G   ++C AD ++LPYR   FDAAISIAV+HHLST +RR AA  E++R+L+ GG  L+Y WA EQ +   + F+ QD  +PW   D              GG              G+   V+ RY HLF EGE E L    GG  +V S+YD  NWC V++K
Sbjct:   17 EDEHVHGVYDAIARHFSHTRYKPWPRVASFLQS-LEDGALVADVGCGNGKYLQVNPK-VLMMGSDRSRGLVECCQ----GMGHDVCLADNLMLPYRSDSFDAAISIAVIHHLSTEERRAAAVREILRILKRGGQALIYNWAMEQ-QGRRKGFTQQDNFIPWQLQDKFA-----------GGT-------------GQLVMVYNRYYHLFVEGESEKLMELAGGNEIVDSFYDHENWCVVIRK 227
[Close]
BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: A0A6T8PHS4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PHS4_HEMAN)

HSP 1 Score: 195 bits (496), Expect = 1.820e-58
Identity = 110/252 (43.65%), Postives = 151/252 (59.92%), Query Frame = 1 
Query:    7 VPAARRTPAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQK 762
            +PA ++   +E E+V  VYD IA H+S TR+ PWP+VA YL+   + G L+AD+GCGNGKY+     G+ V G D S  LL LC ++      E+  AD + LPYR   FDA +SIAV+HH+S+ +RR+ A  E++R+ R GGTVL+Y WA EQ    +  F+ QD L+PWH   SMR ++                  HG   E K S V++RY HLF EGE++ L   + GC VV SYYD  NW  V+++
Sbjct:   19 LPAGQKEEELEDEYVHKVYDVIAPHFSHTRHSPWPKVAAYLND-LEHGSLVADVGCGNGKYMA-VRDGLFVSGSDRSPELLKLCGES----GLEVFVADNMKLPYRSASFDAVLSIAVIHHMSSPERRVEAIRELLRIARVGGTVLIYVWAMEQKGRRA-GFTEQDQLIPWHL--SMRFRAEPLL--------------HGEVDEEKKSVVYKRYYHLFVEGELQQLVQGIAGCEVVDSYYDHENWVVVLKR 247
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BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: A0A2R5GSD9_9STRA (Alkylated DNA repair protein alkB-like 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GSD9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.030e-58
Identity = 107/247 (43.32%), Postives = 134/247 (54.25%), Query Frame = 1 
Query:   28 PAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEE-SSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQKD 765
            P IE EHV+ VYD IA HW  TRYK WP+V  ++      G L+ D GCGNGK L    +  + +GCD SA L+ +C    A    E+  AD   LPYRD  FDAA+SIAVLHH+ST  RR+   AE +R LR GG  L YAWAQEQ E  S   FS  D+ VPWH                                      VF RYCH+++ GE+EALF ++ G  + +SYYDC NWC + +K+
Sbjct:  134 PDIEIEHVKDVYDAIAPHWHGTRYKAWPQVEAFVRGLAP-GSLVGDFGCGNGKNLPSCNENGIGLGCDFSAGLVKIC----ADLGHEVSVADATRLPYRDNVFDAALSIAVLHHISTDARRVQLIAETMRTLRVGGRALFYAWAQEQDEGVSGHRFSEADVFVPWHLRGQ--------------------------------DCVFDRYCHVYQRGELEALFQQIPGVCIERSYYDCGNWCVIARKE 343
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BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: K3W7F8_GLOUD (Methyltransf_11 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7F8_GLOUD)

HSP 1 Score: 192 bits (489), Expect = 1.770e-57
Identity = 107/245 (43.67%), Postives = 146/245 (59.59%), Query Frame = 1 
Query:   28 PAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQK 762
            PA+E+EHV +VYD+IA H+S TR+ PWP V  +L A      L+AD+GCGNGKYLG +P  V ++G D S  LL  C+++  G+   L   D + +P R G FDAAISIAVLHH+STR RR+A  +E+ R+++ GG V + AWA EQ E S R F  QD++V W   +    +   A               H  +   K   V+QRYCH++ EGE+E L   V G  VV++ Y  SNWC  V++
Sbjct:   16 PALESEHVHSVYDSIAPHFSHTRHHPWPLVTAFL-ADVAPSALVADVGCGNGKYLGGSPH-VCMIGSDRSLPLLQTCAQS--GKNYNLFGCDALKVPLRTGAFDAAISIAVLHHISTRARRIALISELARIVKVGGRVFIVAWAFEQDERSKRQFDEQDVMVEWKLQNKYVAEPLAA---------------HAKQDADKKWVVYQRYCHVYTEGELEELVACVPGLKVVETQYSRSNWCVTVER 241
[Close]
BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: F2U9J4_SALR5 (tRNA (Uracil-5-)-methyltransferase TRM9 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U9J4_SALR5)

HSP 1 Score: 199 bits (507), Expect = 2.050e-57
Identity = 115/249 (46.18%), Postives = 145/249 (58.23%), Query Frame = 1 
Query:   16 ARRTPAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQK 762
            A RTPA+E EHV  +YDTIA HW  TR+KPWP+VAE+L A    G L+AD+GCGNGKY+G     +V++G D S  L  LC++   G    +C  D + L Y+ G FDA +S+AVLHH ST  RR  A  EM  +L PGG+VLV AWA EQG ES R F  QD+ VPW          A+    R   A     P+           V+ RYCH+F++GE++AL    G   V  SYYD SNWC   +K
Sbjct:  248 AARTPALEQEHVVNLYDTIAVHWDKTRHKPWPKVAEFL-ASLPPGSLVADVGCGNGKYMGLRKD-IVMLGSDRSVNLCDLCARQ--GHEVSIC--DNMTLAYKTGCFDAVLSVAVLHHFSTPARRKRAMCEMAALLVPGGSVLVQAWALEQGAESRREFPSQDVFVPWQHKGEEEEIPAEQQLARTRRAHPISTPEDAV-------PVYHRYCHVFRQGELDALATSAG-LHVEDSYYDTSNWCIRARK 482
[Close]
BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: A0A7S4A601_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A601_9STRA)

HSP 1 Score: 199 bits (506), Expect = 4.700e-57
Identity = 112/253 (44.27%), Postives = 146/253 (57.71%), Query Frame = 1 
Query:   22 RTPAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCA-PQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQ----DMLVPWHFADSMRRKSADASTERHGGAKTSQQ-PQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCAVVQK 762
            +TP+IE EHVR+VY+ IA  W  TRYK WPRVA++    C +G L+AD+GCGNGK    A  +G   + CD S AL+ +   T   +  E   AD V LPYR G FD A++IAVLHHLST +RR+    E +R+L+PGG  L YAWA+EQ   S     HQ    D+LVP+H  +             H   +T++Q P H  R E K++TV +RYCH+F EGE+  L    G   V + YYD  NW     K
Sbjct:  268 KTPSIELEHVRSVYNAIAPQWHGTRYKAWPRVAKFCLMNCGAGALVADVGCGNGKMADAACRRGAFTIACDTSDALIDIAHTTHKDKRYECLVADGVRLPYRSGAFDVALNIAVLHHLSTAERRVQCIRETLRILKPGGRALFYAWAKEQKNGSENRSGHQFDSTDVLVPFHLREH----------GPHYNKETARQCPAHAVRDERKNATVLKRYCHVFAEGELRGLV--AGAARVDECYYDEGNWAVACTK 508
[Close]
BLAST of jgi.p|Trimin1|167816 vs. uniprot
Match: A0A6A4DVI4_9STRA (Methyltransf_11 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DVI4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.310e-55
Identity = 105/238 (44.12%), Postives = 141/238 (59.24%), Query Frame = 1 
Query:   34 IEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSGHLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTADVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVYAWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQPQHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWC 747
            +E EHV  VYD IA H+S TR+ PWP+V ++L A+ +   L+AD+GCGNGKYL   P  + V+G D S  L+    +T A     L   D   +P R G FDAA+SIAV+HH+ST +RR+A  +E+ R++R GG VLV AWA EQ E S R F  QD++V W        +  D   +  GG   S    HG     K   V++RYCH++++GE+EAL  +V G  VV   Y  SNWC
Sbjct:   22 LEREHVHKVYDLIAPHFSHTRHHPWPQVTQFL-AQLEPAALVADVGCGNGKYLRVNPS-LCVIGADRSIPLM----QTAASSDCNLLGCDAPKVPLRTGAFDAALSIAVMHHISTEERRVALLSELARLVRVGGEVLVVAWAFEQDERSKRRFEQQDVMVEWKL------QQKDTQEKDSGGEADSGSGSHGRVDRAKRWVVYERYCHVYRKGELEALVAQVPGLQVVSVEYSRSNWC 247
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167816 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPN8_9STRA1.310e-192100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S4K6T7_GUITH1.070e-6146.28Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S2R7G3_9STRA2.750e-5944.53Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
L1JQV4_GUITC6.730e-5945.04Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A6T8PHS4_HEMAN1.820e-5843.65Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A2R5GSD9_9STRA2.030e-5843.32Alkylated DNA repair protein alkB-like 8 n=1 Tax=H... [more]
K3W7F8_GLOUD1.770e-5743.67Methyltransf_11 domain-containing protein n=1 Tax=... [more]
F2U9J4_SALR52.050e-5746.18tRNA (Uracil-5-)-methyltransferase TRM9 n=1 Tax=Sa... [more]
A0A7S4A601_9STRA4.700e-5744.27Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6A4DVI4_9STRA6.310e-5544.12Methyltransf_11 domain-containing protein n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_53contigContig_53:219955..225060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167816|e_gw1.53.81.1
BRITEko00000,ko01000,ko03016,ko04812
KEGG koko:K10395,ko:K10770
EC2.1.1.229
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0051213,GO:0055114,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
DescriptiontRNA (uracil) methyltransferase activity
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0500@1|root,KOG1331@2759|Eukaryota
Evalue2.18e-71
Seed ortholog2880.D7FII3
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-28_000390.1
TranscriptId168138
TrackFilteredModels1
ProteinId167816
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167816gene_8158Tribonema minus UTEX_B_3156 geneContig_53 219955..225060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167816Trimin1|167816|e_gw1.53.81.1Tribonema minus UTEX_B_3156 polypeptideContig_53 219955..225060 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8158_1exon_8158_1Tribonema minus UTEX_B_3156 exonContig_53 219955..220037 +
exon_8158_2exon_8158_2Tribonema minus UTEX_B_3156 exonContig_53 220545..220728 +
exon_8158_3exon_8158_3Tribonema minus UTEX_B_3156 exonContig_53 223319..223528 +
exon_8158_4exon_8158_4Tribonema minus UTEX_B_3156 exonContig_53 224236..224338 +
exon_8158_5exon_8158_5Tribonema minus UTEX_B_3156 exonContig_53 224846..225060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8158CDS_8158Tribonema minus UTEX_B_3156 CDSContig_53 219955..220037 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8158 ID=mRNA_8158|Name=jgi.p|Trimin1|167816|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=795bp|location=Sequence derived from alignment at Contig_53:219955..225060+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTACCTGCTGCCAGAAGAACTCCAGCCATAGAGGCGGAGCATGT
TCGAGCCGTGTATGATACCATTGCTACACACTGGAGCAGCACTCGCTACA
AGCCATGGCCGCGCGTGGCAGAGTACCTGCACGCGCGCTGCAAAAGCGGC
CATCTCATTGCCGACCTTGGCTGCGGCAACGGCAAGTACCTGGGCTGCGC
GCCACAGGGAGTAGTGGTCGTTGGCTGCGATGCCAGTGCTGCGCTCCTGA
GCTTGTGCTCGAAGACGCCTGCAGGCCGAGCAGCAGAGCTCTGCACCGCA
GACGTTGTCTTGCTGCCATATCGTGATGGCCAGTTTGATGCGGCAATTTC
CATAGCCGTGCTGCACCATCTGTCGACACGGCAGCGGCGGTTAGCGGCCG
CCGCCGAAATGGTTCGCGTGCTGCGCCCGGGCGGCACGGTGCTTGTGTAT
GCGTGGGCCCAGGAACAGGGTGAGGAGTCTTCACGCAGCTTCTCCCACCA
GGACATGCTGGTGCCGTGGCATTTTGCAGACAGCATGAGAAGAAAGAGCG
CCGACGCCAGCACAGAACGACATGGCGGGGCAAAAACATCACAGCAACCG
CAGCATGGCTACAGGGCGGAAGGCAAGCACAGCACCGTGTTTCAGCGCTA
CTGCCATCTGTTCAAGGAGGGTGAGGTAGAGGCGCTCTTTCATCGTGTCG
GCGGGTGCACGGTGGTGCAGTCGTATTACGATTGCTCCAACTGGTGTGCA
GTGGTGCAGAAGGACGTTGCTGACAAGCACAACATCATTGAGTAA
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protein sequence of jgi.p|Trimin1|167816

>Trimin1|167816|e_gw1.53.81.1 ID=Trimin1|167816|e_gw1.53.81.1|Name=jgi.p|Trimin1|167816|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=265bp
MHVPAARRTPAIEAEHVRAVYDTIATHWSSTRYKPWPRVAEYLHARCKSG
HLIADLGCGNGKYLGCAPQGVVVVGCDASAALLSLCSKTPAGRAAELCTA
DVVLLPYRDGQFDAAISIAVLHHLSTRQRRLAAAAEMVRVLRPGGTVLVY
AWAQEQGEESSRSFSHQDMLVPWHFADSMRRKSADASTERHGGAKTSQQP
QHGYRAEGKHSTVFQRYCHLFKEGEVEALFHRVGGCTVVQSYYDCSNWCA
VVQKDVADKHNIIE*
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mRNA from alignment at Contig_53:219955..225060+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8158 ID=mRNA_8158|Name=jgi.p|Trimin1|167816|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5106bp|location=Sequence derived from alignment at Contig_53:219955..225060+ (Tribonema minus UTEX_B_3156 )
ATGCACGTACCTGCTGCCAGAAGAACTCCAGCCATAGAGGCGGAGCATGT
TCGAGCCGTGTATGATACCATTGCTACACACTGGTGAGTGTTACTGAGCG
TCACCACAGCTCCTTTGTGGTGCCCACTCACACGGCGATGGCCCTTGCAG
AATGGGAGCATCGCTGGCGATACGCAGGGAATCATGTACTCCAAATCAAT
ATGCAGCTCCTGTGCATACTTGCGCGTCACAGGCAAGCAAACACGTAGAC
CACCGTGCAAGTCAGTCTCACTCATTTGCTGTGAAAGCTGATTTGGCACC
TTCTGACATTGCCAGTGTTCATACACTATTGAAATATGTGTTCAGGGTAT
ATGAGAAGGAGTGGTATCCTGCTGCTTTGCCAGGTGCAGTTGTCCTGAAC
CGCGTTGGCTCGACTGAGGTCGCTTTGGTGGTGCTGGCGTACCTGCGCCA
CTTCACCAGAATGATTTGCACTTAGCAATAATGCAGCGAGGTCCTACAAT
TTGCAACACACGCATGGCAGCCGTACAGCGCTACCCAGTGGCAGCGCTCA
GAAGTACTTGTGCCTTCGCTGATGCCGCCGCCGCCAACAGGAGCAGCACT
CGCTACAAGCCATGGCCGCGCGTGGCAGAGTACCTGCACGCGCGCTGCAA
AAGCGGCCATCTCATTGCCGACCTTGGCTGCGGCAACGGCAAGTACCTGG
GCTGCGCGCCACAGGGAGTAGTGGTCGTTGGCTGCGATGCCAGTGCTGCG
CTCCTGAGCTTGTGCTCGAAGACGGTGAGCATTCAGGGTCTGTAGCAGTC
ATCATAGGTTCCAGTTGCGTGCAATGCATGTGCTGATGGTTGGGTGTCAT
ACATAGCGTGTTCGTTACGCAGTCTTGGCGGTGCCGGTGCTGAGCGTTTT
GGGCAGGTGCCAAGAGCAGCCATGCCACGTGGTTATAAGCTAGTGAAATA
GGGAGGGCCATCAGCTGCAGGTTGTCTGGTAACACCAGCTTTGGATTTCA
CCAGCCAACCTGCAGGAGCGAGCGCCAGCGCAGCGTTAGTGTTGTTGCAG
CCCCAAGTGTTACGATTATAAAACGTCAAGATTTAGCATTGCGCACCTAC
ATTAGCATTGCAGCTGTGGCATGAAAGACAAGTCATGACCAGGCAGGAGC
ACTTCCTGACATGTGCTCTGCGGAGAAGCTGCCGCACTCAGATGCAGGTG
ACCTCATTGAGCAATGCTCGCGGAGGGTGGTGCGTGACGGCGCACCGCCC
ATTGCCGTAAAATCGGTGAGCAACTGCCAAAAGGCAGCCAGCATACCGCC
GCCGTCCCCGGAGACATTCTGCACTACACCTGAGGTGGACTTGCCATATC
AGCGTACCGTACACCAGCAAGGCATTAGAGGGTTTCCGAGTTCTCTTTTT
CCAACTAGAAATTGATTTCTAGAGAAGCGCGAGTCTTGACTCGGCTGTTC
ATCTTGCTTTTTTCTAGAAATCGTCTCTATTTCTGTTGGTGCCGCTCCAG
CTCATCAACGGCGCATGAGTCATGAGCTCAAGTTCATGCTCTACCCTGCC
GAGTACAGTGACAATGCCCCGGCCTGCAATTGCGGCTGCATGTGCCTGTC
CTACCTCGACAGCGTGCCACACATCCAGCCTTACACCTGTCGCTCAGCCA
TGTACCAAACGGTATGTATGTACTGGTGGCATGCTTTGACTGTGTGAGAC
GGTGGGGGATCAGCACAGTGCACCTGTGGAGCGCTCCTGCCAGCACCTTG
AAGGAGTTCGCCTACAGCTGCTGGACCAGGTGTCACCCGCAGCACCACGC
CACACGCGACCAGACTGCACTGCGGCAGTGGTAGTGCCATTGTCGAGCAG
TGCCAGAACCTTGGGATCGTCTCCGCCGTCACGGACCTCTACGCCAGCAG
CTTCAGGGTGCTTCAATGCACTGTAACAGCAGATGACAGCAGCCTGGAGG
GCATGAGCTGCGACGGGGATGGTGCAGCTGACTATGTGATAGCGAGGTCA
GTGAGGCCGAGCTTGTACGCAAGCACAAACGCACCCATCGTCGCCTCTAC
TCTCCAAATCTCCCCGGCAAGCTTCGAGTTGGCGCTGTTGACGCTGCTGT
CATCCTCCTCCTCCTCAGCGGCGCGTGCCCTGCTGTAAACGCTGCTGCGT
CGGCGCTCGCGCACAAGCTTGGCCTCACTGTCCTTGCTGTCACCGTAGTC
ATCAGCGTCATCCCCGTCGCAGCTCATCCCGTCCAGTCTGCTGTCATCTG
CGGCAACAACGTCGTGCAGCGCCCTGAAGCTGCTGACGTAGAAGTCCATG
ACAGCGGAGATGATCCCACGGTTCTGGCACTGCTCGACAATGTCACCGTA
CCACTGCCGCAGTGCAGTCTGATCACGTGTGGCGTGGTGCTGCGGGTGAC
ACCAGCAGATGTAGGCAAACTCCCGCAACGTGTTGGCAGGGGTGCTCCAG
AGGTGTACGGTGCTGAAGCCCCGCCGCCTCACCCAATCAAAGTAGGCCAT
GAGCGTTATCTTGTACACCGCCGAACGAGAAGTGTACGGCTGCACGTACG
GTACGCTGTCGAGGTAAGACAAGTACACGCGGCCGCGGTTGCAGGCGGGG
GCATCGTCACCGTACTCATACGCGTAGAGCATGAAGCTCATGACCCATGC
ACCATCGATGAGCTGGAAAAGGCTCAAGGCCTTGCTCATATACGCTATGC
ACTTTGGCAGATCCTCCCCAGGTGCAGCGCACAATGTCGCCTGCATAGGC
GGCAGGCTGCTAGTTGCCTTTTTGCAGTTGCTGACCAGCCTCACAGCAAT
GGGTGGCGCACCAGCAGGCACCATGCGCTGCCCCCGATACTTAACGTAGT
TGCAGATGTCCAAGTGCAGCAGACTTAGCCGCAGAAAGATAGGAAGTGCT
GCTGCCCAATCATACCTTGGCACCATGGCTATGAGACCATGATACAGGTG
CAAGGCTGCCGGGCGCTCTGGTTGACAGCACTGTAGCCATAGTGCCTTTA
AGCGTTGCCTGCGCTAATGATGTTAGCTGCAGCAGTGGCGTGTCAAGCAT
TGGCAGCGCTCAGTCTCAGGCTCTCACATGGTGTACCTGTGACTGCAACA
TGCGCTCATAAGCGCGCATCTGGATCACTTGTTTTGCTATACATTTGTGT
GCCTTCTAGTGTAACACAAAACTCAATCAGCTGTTGTCTGCAACACGCGC
GTATCCAGTGTCCTGCTGACACCCACAAAGAGTGCACTTGAATCGCTGAA
TGACCAGGATGCACCTGGCGAAGTGTCAGATTAAACGCCTGCTTGTTCAA
GCCGTGTTGCCTCACCTGCTGTCCGCGCTGCTGTCATTGTCTTTTCTCGC
TGCCTCAATGCCAGCCTGCAGGCCGAGCAGCAGAGCTCTGCACCGCAGAC
GTTGTCTTGCTGCCATATCGTGATGGCCAGTTTGATGCGGCAATTTCCAT
AGCCGTGCTGCACCATCTGTCGACACGGCAGCGGCGGTTAGCGGCCGCCG
CCGAAATGGTTCGCGTGCTGCGCCCGGGCGGCACGGTGCTTGTGTATGCG
TGGGCCCAGGAACAGGGTGAGGAGGTGAGTCAGAGTCAGAGTCACTGTAT
GAGGGTGGGATCAAGTCTGACCAATAAGTGCGCATTGGTACGCTTTGTGA
CAGCTGCAACTCCCCCAATGTTCACATTGGCAGATGCGCTGCCAAATGAG
TACCCCACGGCAAATTTGGCGTCCTCGTGGCGGCTCACATTGCTGTAGCA
ATTGTTGTCTCGAAGGTTTGCTGTCGACGCACGGTGTACGCGTTTGCAGC
TGCGTCGTACTGTACCATGATACACAGCTGATATGTATGTTATTTGTGCC
TTTGCAACCATCGCTTGCCGGCACAGTCCGTACATCAGAGCGACCACGTG
CACACATACAGCCTCAGGCCTGTCGTAAGATGCGCATTGCCGATGGAATG
CCAGTGTAGGGCATACCCTGCCAGCACAACAAAACACACAGTCTCAATCA
AACACCTCGAAGTACACATTTGCAGTCAGCCAGACCATACTCAAGCCTGA
GAGCCGACTGCTATAATTCTGTACGTTTACTTGGTGCGTGACATCCAAGT
TTGGTGCATGGCTCAGCAGATCTCGACTGCTCACATTGTATCTTTTATGC
ATGCGCCGCTACTCAGGTGCGCATTTCATAGTCGGCTATCTGAAATGTTG
GCACTTATCATACAGTTGTGTAAGGCAATTGCCACACACCATCGTAATAC
TACGTCTGCTCTGCACCCTTTGACTGTGCAGTCTTCACGCAGCTTCTCCC
ACCAGGACATGCTGGTGCCGTGGCATTTTGCAGACAGCATGAGAAGAAAG
AGCGCCGACGCCAGCACAGAACGACATGGCGGGGGTGATGCAGCATCAAT
AGCTACTGCTGAGGTCAGCATGCCTACCCACATCAAGCACATGTGCAGAA
GCTCAATAGCAGTATCAAGTAGGCTCTGGCCTGATGGTGTGTGGGTGGCA
TACCGACAACGGTGGTGCTGCTTTAACAACTTCTGACCAATGTTACACTA
CCTGAAAATGTTCAGCAGACATTCAACCACAGTACACTGATGGCGTATAC
TGTTGTACTGTGAGAGCTAGCTAGTAGACTGCACTGGTCACTTCACCACC
GACTATTCATGATGTGTGAAGCGGATTTTTTTAAGTGGCACAAACACAAA
CATACTTGACTCGCATTGCCCCTGCCAGTGCATTGATTGCAGCAACCTGA
AGTGGCAAACTTGTTGCATCTTCACACACGTAGATGAAACATCCAAGCTT
TGACCTGAGCGTGTCATTTTTTATGCTGTGTGGCTGCAGGAGCTCAGTGA
CGAAGGTACCAGCAAGCCACAACACGACAGCAATCCCCCAGCAAAAACAT
CACAGCAACCGCAGCATGGCTACAGGGCGGAAGGCAAGCACAGCACCGTG
TTTCAGCGCTACTGCCATCTGTTCAAGGAGGGTGAGGTAGAGGCGCTCTT
TCATCGTGTCGGCGGGTGCACGGTGGTGCAGTCGTATTACGATTGCTCCA
ACTGGTGTGCAGTGGTGCAGAAGGACGTTGCTGACAAGCACAACATCATT
GAGTAA
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Coding sequence (CDS) from alignment at Contig_53:219955..225060+

>mRNA_8158 ID=mRNA_8158|Name=jgi.p|Trimin1|167816|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=795bp|location=Sequence derived from alignment at Contig_53:219955..225060+ (Tribonema minus UTEX_B_3156 )
ATGCACGTACCTGCTGCCAGAAGAACTCCAGCCATAGAGGCGGAGCATGT
TCGAGCCGTGTATGATACCATTGCTACACACTGGAGCAGCACTCGCTACA
AGCCATGGCCGCGCGTGGCAGAGTACCTGCACGCGCGCTGCAAAAGCGGC
CATCTCATTGCCGACCTTGGCTGCGGCAACGGCAAGTACCTGGGCTGCGC
GCCACAGGGAGTAGTGGTCGTTGGCTGCGATGCCAGTGCTGCGCTCCTGA
GCTTGTGCTCGAAGACGCCTGCAGGCCGAGCAGCAGAGCTCTGCACCGCA
GACGTTGTCTTGCTGCCATATCGTGATGGCCAGTTTGATGCGGCAATTTC
CATAGCCGTGCTGCACCATCTGTCGACACGGCAGCGGCGGTTAGCGGCCG
CCGCCGAAATGGTTCGCGTGCTGCGCCCGGGCGGCACGGTGCTTGTGTAT
GCGTGGGCCCAGGAACAGGGTGAGGAGTCTTCACGCAGCTTCTCCCACCA
GGACATGCTGGTGCCGTGGCATTTTGCAGACAGCATGAGAAGAAAGAGCG
CCGACGCCAGCACAGAACGACATGGCGGGGCAAAAACATCACAGCAACCG
CAGCATGGCTACAGGGCGGAAGGCAAGCACAGCACCGTGTTTCAGCGCTA
CTGCCATCTGTTCAAGGAGGGTGAGGTAGAGGCGCTCTTTCATCGTGTCG
GCGGGTGCACGGTGGTGCAGTCGTATTACGATTGCTCCAACTGGTGTGCA
GTGGTGCAGAAGGACGTTGCTGACAAGCACAACATCATTGAGTAA
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