mRNA_8108 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165717
Unique NamemRNA_8108
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: A0A835YXB2_9STRA (COX2_CUA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXB2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.580e-36
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVESGLKKLVDKLLMRSMVKFIFGLYLLA 183
            RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVESGLKKLVDKLLMRSMVKFIFGLYLLA
Sbjct:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVESGLKKLVDKLLMRSMVKFIFGLYLLA 61
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BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: A0A6M8Q8G5_9FLOR (Cytochrome c oxidase subunit II (Fragment) n=2 Tax=Asparagopsis taxiformis TaxID=260499 RepID=A0A6M8Q8G5_9FLOR)

HSP 1 Score: 69.3 bits (168), Expect = 2.630e-14
Identity = 27/36 (75.00%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQ+SL++ R+G++YGQCSEICGVNHGF+PIVVE+
Sbjct:   14 RLNQISLFIKREGIYYGQCSEICGVNHGFMPIVVEA 49
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BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: UPI001BC20472 (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI001BC20472)

HSP 1 Score: 68.6 bits (166), Expect = 3.470e-14
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQV+LY+ R GVFYGQCSE+CGVNH F+PIVVE+
Sbjct:    7 RLNQVALYITRSGVFYGQCSELCGVNHAFMPIVVEA 42
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BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: A0A6B7KA03_9FLOR (Cytochrome c oxidase subunit II (Fragment) n=1 Tax=Botryocladia occidentalis TaxID=220759 RepID=A0A6B7KA03_9FLOR)

HSP 1 Score: 68.6 bits (166), Expect = 4.580e-14
Identity = 27/36 (75.00%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQVSL++ R+G++YGQCSEICG+NHGF+PIVVE+
Sbjct:    8 RLNQVSLFIKREGLYYGQCSEICGINHGFMPIVVEA 43
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BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: Q8M2B8_9FLOR (Cytochrome c oxidase subunit 2 (Fragment) n=1 Tax=Caulacanthus ustulatus TaxID=31411 RepID=Q8M2B8_9FLOR)

HSP 1 Score: 68.2 bits (165), Expect = 5.910e-14
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQ SL++ R+GV+YGQCSEICG+NHGF+PIVVE+
Sbjct:    4 RLNQTSLFIKRQGVYYGQCSEICGINHGFMPIVVEA 39
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BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: Q6X328_BOSMO (Cytochrome oxidase subunit II (Fragment) n=5 Tax=Bostrychia moritziana TaxID=103713 RepID=Q6X328_BOSMO)

HSP 1 Score: 68.2 bits (165), Expect = 6.060e-14
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQ SL++ R+GV+YGQCSEICG+NHGF+PIVVE+
Sbjct:    4 RLNQASLFIKREGVYYGQCSEICGINHGFMPIVVEA 39
[Close]
BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: A0A884Q057_9FLOR (Cytochrome oxidase subunit 2 n=14 Tax=Lithophyllum TaxID=48954 RepID=A0A884Q057_9FLOR)

HSP 1 Score: 67.8 bits (164), Expect = 8.020e-14
Identity = 26/36 (72.22%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQ SL++ R+G++YGQCSEICG+NHGF+PIVVE+
Sbjct:    2 RLNQTSLFIKREGIYYGQCSEICGINHGFMPIVVEA 37
[Close]
BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: A0A2D6YCP2_9GAMM (COX2_CUA domain-containing protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2D6YCP2_9GAMM)

HSP 1 Score: 67.8 bits (164), Expect = 8.210e-14
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQVS++L R G FYGQCSEICGVNHGF+PIVV+S
Sbjct:   11 RLNQVSVFLKRLGTFYGQCSEICGVNHGFMPIVVKS 46
[Close]
BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: A0A873WRK8_9EUKA (Cytochrome c oxidase subunit 2 n=2 Tax=Cyanophora TaxID=2761 RepID=A0A873WRK8_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 1.060e-13
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES-GLKKLVDKLLMRSMV 153
            RLNQ+ +++ R+GVFYGQCSEICGVNHGF+PIV+E+  LK  +D +  +S+V
Sbjct:  199 RLNQIGMFIKREGVFYGQCSEICGVNHGFMPIVIEAVNLKNYIDWINTKSLV 250
[Close]
BLAST of jgi.p|Trimin1|165717 vs. uniprot
Match: G1FMB0_9FLOR (Cytochrome oxidase subunit 2 (Fragment) n=40 Tax=Rhodymeniophycidae TaxID=2045261 RepID=G1FMB0_9FLOR)

HSP 1 Score: 67.8 bits (164), Expect = 1.070e-13
Identity = 26/36 (72.22%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVES 108
            RLNQ SL++ R+G++YGQCSEICG+NHGF+PIVVE+
Sbjct:   14 RLNQASLFIKREGIYYGQCSEICGINHGFMPIVVEA 49
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165717 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXB2_9STRA3.580e-36100.00COX2_CUA domain-containing protein n=1 Tax=Tribone... [more]
A0A6M8Q8G5_9FLOR2.630e-1475.00Cytochrome c oxidase subunit II (Fragment) n=2 Tax... [more]
UPI001BC204723.470e-1477.78Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A6B7KA03_9FLOR4.580e-1475.00Cytochrome c oxidase subunit II (Fragment) n=1 Tax... [more]
Q8M2B8_9FLOR5.910e-1475.00Cytochrome c oxidase subunit 2 (Fragment) n=1 Tax=... [more]
Q6X328_BOSMO6.060e-1475.00Cytochrome oxidase subunit II (Fragment) n=5 Tax=B... [more]
A0A884Q057_9FLOR8.020e-1472.22Cytochrome oxidase subunit 2 n=14 Tax=Lithophyllum... [more]
A0A2D6YCP2_9GAMM8.210e-1480.56COX2_CUA domain-containing protein n=1 Tax=Legione... [more]
A0A873WRK8_9EUKA1.060e-1359.62Cytochrome c oxidase subunit 2 n=2 Tax=Cyanophora ... [more]
G1FMB0_9FLOR1.070e-1372.22Cytochrome oxidase subunit 2 (Fragment) n=40 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_40contigContig_40:822053..822238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165717|e_gw1.40.126.1
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
BRITEko00000,ko00001,ko00002,ko01000,ko03029
KEGG ModuleM00154
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG koko:K02256,ko:K02261
EC1.9.3.1
GOsGO:0003674,GO:0003824,GO:0004129,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006140,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006979,GO:0007275,GO:0007589,GO:0007595,GO:0008150,GO:0008152,GO:0008324,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010310,GO:0010562,GO:0010726,GO:0010728,GO:0010729,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0015002,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015672,GO:0015980,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0016675,GO:0016676,GO:0017144,GO:0019219,GO:0019220,GO:0019222,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022857,GO:0022890,GO:0022900,GO:0022904,GO:0030808,GO:0030810,GO:0030879,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0045935,GO:0045937,GO:0045981,GO:0046034,GO:0046483,GO:0046903,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050878,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051194,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0080090,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1900371,GO:1900373,GO:1900542,GO:1900544,GO:1901135,GO:1901360,GO:1901564,GO:1902600,GO:1903426,GO:1903428,GO:1903578,GO:1903580,GO:2000377,GO:2000379,GO:2001169,GO:2001171
Preferred nameCOX2
Descriptionoxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1622@1|root,KOG4767@2759|Eukaryota
Evalue1.05e-13
Seed ortholog45157.CMW010CT
Hectar predicted targeting categoryother localisation
TranscriptId166039
TrackFilteredModels1
ProteinId165717
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165717gene_8108Tribonema minus UTEX_B_3156 geneContig_40 822053..822238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8108_1exon_8108_1Tribonema minus UTEX_B_3156 exonContig_40 822053..822238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8108CDS_8108Tribonema minus UTEX_B_3156 CDSContig_40 822053..822238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165717Trimin1|165717|e_gw1.40.126.1Tribonema minus UTEX_B_3156 polypeptideContig_40 822053..822238 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8108 ID=mRNA_8108|Name=jgi.p|Trimin1|165717|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_40:822053..822238+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTTTAAACCAAGTATCATTATATCTTCTTCGTAAAGGTGTTTTTTATGG
TCAATGTAGCGAAATTTGCGGTGTAAATCATGGATTTATACCCATTGTTG
TTGAAAGTGGATTGAAAAAATTAGTGGACAAGCTATTAATGAGGTCTATG
GTCAAATTCATTTTTGGCTTATATTTGTTGGCGTAA
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protein sequence of jgi.p|Trimin1|165717

>Trimin1|165717|e_gw1.40.126.1 ID=Trimin1|165717|e_gw1.40.126.1|Name=jgi.p|Trimin1|165717|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
RLNQVSLYLLRKGVFYGQCSEICGVNHGFIPIVVESGLKKLVDKLLMRSM
VKFIFGLYLLA*
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mRNA from alignment at Contig_40:822053..822238+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8108 ID=mRNA_8108|Name=jgi.p|Trimin1|165717|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_40:822053..822238+ (Tribonema minus UTEX_B_3156 )
CGTTTAAACCAAGTATCATTATATCTTCTTCGTAAAGGTGTTTTTTATGG
TCAATGTAGCGAAATTTGCGGTGTAAATCATGGATTTATACCCATTGTTG
TTGAAAGTGGATTGAAAAAATTAGTGGACAAGCTATTAATGAGGTCTATG
GTCAAATTCATTTTTGGCTTATATTTGTTGGCGTAA
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Coding sequence (CDS) from alignment at Contig_40:822053..822238+

>mRNA_8108 ID=mRNA_8108|Name=jgi.p|Trimin1|165717|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=186bp|location=Sequence derived from alignment at Contig_40:822053..822238+ (Tribonema minus UTEX_B_3156 )
CGTTTAAACCAAGTATCATTATATCTTCTTCGTAAAGGTGTTTTTTATGG
TCAATGTAGCGAAATTTGCGGTGTAAATCATGGATTTATACCCATTGTTG
TTGAAAGTGGATTGAAAAAATTAGTGGACAAGCTATTAATGAGGTCTATG
GTCAAATTCATTTTTGGCTTATATTTGTTGGCGTAA
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