mRNA_8086 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YUX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX2_9STRA) HSP 1 Score: 490 bits (1262), Expect = 4.940e-174 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1 Query: 1 MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNSNDNWYF 801 MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNSNDNWYF Sbjct: 1 MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNSNDNWYF 267
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YTI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI8_9STRA) HSP 1 Score: 274 bits (700), Expect = 4.470e-87 Identity = 142/241 (58.92%), Postives = 164/241 (68.05%), Query Frame = 1 Query: 55 MRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTV 777 MR VFTSMAGRRLLPKEGW LNR I DTAAPTV +A ++AD+ I H LLED++RR ++ L MEGDFT +QERPLSLPPSLV L LNGFRGLREL+L+ FPQLDE+PPGLR LKL ++HPLPPL RSLSLYW PP PAPPLP RWP HLERL YWA+ + A L LNGC VH LP+ L+++RLG FTQ+LTFTGRVT+ Sbjct: 1 MRRVFTSMAGRRLLPKEGWSLNRVIHDTAAPTV-----KARVEADTVLFAIQHRLLEDTSRRFILDLIMEGDFTRIQERPLSLPPSLVRLELNGFRGLRELELLEFPQLDEVPPGLRVLKLHTYEHPLPPLPDTLETLVLDNCTHHVVDVPDSVRSLSLYWRPPEPAPPLPARWPPHLERLAYWARCEDA-------------ALELNGCVVHTCLPQNLREMRLGSEFTQRLTFTGRVTL 223
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A836CCC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC0_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.480e-58 Identity = 137/318 (43.08%), Postives = 157/318 (49.37%), Query Frame = 1 Query: 22 APTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFR----------------------------------------GLRELDLVAF---------------PQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAK--SDGAPMPVIKRLPPTLRELALNGCEV-HASLPRTLQKVRLGRNFTQQLT-----FTGRVTVNSN 786 APT AN+ ++MR VFTSMAGRRLLPKE W LNRAI DTAAPTV VH L A S S I H LLE RRL+V LTMEGDFT +Q PLSLPPSLV L L GFR GL L + A P+L +LPPGLR LKLR ++HPLPPL + L PAPPLP WPAHLE L+YWA SD + LP TL L LNGC V ++P+TLQ++RLGR FTG + +NSN Sbjct: 215 APTAPANHHEIMRRVFTSMAGRRLLPKESWSLNRAIHDTAAPTVEVH-----LVAGSASPAIAHCLLEGIVRRLIVNLTMEGDFTKIQAHPLSLPPSLVRLSLRGFRVHWQDLIALLSPAVANVEVHSCLFASDIRSHAVTILSLPEGLSSLQMAACNTVSSGRVIFSRAPTPELADLPPGLRVLKLRAYEHPLPPLP---------------------------HTLETLPAPPLPDDWPAHLEHLVYWATAASDSEDRAWVDHLPLTLTRLELNGCAVLDGAVPQTLQELRLGRELRHAFDLDVKKFTGTIKINSN 500
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835ZHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHU4_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.040e-57 Identity = 136/354 (38.42%), Postives = 167/354 (47.18%), Query Frame = 1 Query: 4 ERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSL------VSLYLNGFRG----------------------------------------------------------------------------------LRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWA----KSDGAPMPVIKR-LPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTG--RVTVN 780 ER PAP G + Q+++ MVFTSMAGRRLLPK+ W L+R + DT AP + VH L ADS + LH LLED++RR V +LT++GDFTS+Q+RPL+L P L V + F G LR L L F QL ELPP LR L L+ + +PLP L RSL+LYW P PAPPLP RWPAHLERL+ WA + D AP P I R LPPTL +L LNGC + LP+TLQ +RLGR F+Q+L G +VTVN Sbjct: 4 ERIRVPAPAGSLSQQEIVMMVFTSMAGRRLLPKKCWSLSRLLHDTVAPIIKVH-----LVADSINAATLHRLLEDTSRRNVQRLTLDGDFTSMQQRPLNLVPLLSPAVAQVDVAFCSFSGSIEDVLTIPSLPEGVASLSVTAGFSRDVVWAFSKLPQSLRHLIVDATTDVIVFEQPLPTLLESFIVESGGEVHVGAGSLPASLRNLQLWGFQQLYELPPRLRVLMLQRYIYPLPLLPDTLETLVLDYCTHHVSNLPDSVRSLALYWHPAQPAPPLPARWPAHLERLVDWAVGESEPDDAPEPCIDRPLPPTLTQLELNGCSIATDLPQTLQTLRLGRGFSQELDLAGSFKVTVN 352
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YUY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY3_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.380e-57 Identity = 114/235 (48.51%), Postives = 134/235 (57.02%), Query Frame = 1 Query: 28 TGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG--------LRELDLVAF----------PQL-----------------------DELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWA 609 TG ++QD++R+VFTSMAGRRLLP+EGW L+RAI DTAAP V V L+A + H LLED+AR+L+V+LTMEGDFT +Q RPLSLPPSLV L L GFRG LR+L L A+ P L +ELPP LR LKL ++HPLPPL RSLSLYW PP PAPPLP RWPAHLE L YW+ Sbjct: 80 TGDRSHQDIIRIVFTSMAGRRLLPEEGWSLSRAIHDTAAPIVKVR-----LEAGGVPIAMAHHLLEDTARKLIVELTMEGDFTEIQARPLSLPPSLVQLELAGFRGELGPAPSGLRKLSLCAYCEDGDKIIPHPPLADINDGDAMQNLLQEMAELIRAFNELPPSLRVLKLHKYEHPLPPLPDTLETLVLDECTGHIAQLPNSVRSLSLYWRPPRPAPPLPARWPAHLEHLTYWS 309
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A836CEP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP4_9STRA) HSP 1 Score: 183 bits (464), Expect = 5.610e-52 Identity = 133/255 (52.16%), Postives = 148/255 (58.04%), Query Frame = 1 Query: 76 MAGRRLLPKEGWGLNRAIRDTAAPTVS-VHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG--------LREL-------------------DLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLT 756 MAGRRLLPKEGW LNRAI DTAAPT ++ PL +T RR ++ LTME V L LNG RG LR LV PQL+ +PPGLR LKLR+++HPLP L XXXXXXXXXXXXXXXXXXX R LSLYW PP PAPPLP RWP HLERL+YW KS A P I LP TLR+L LNGCEVHA LP+TLQ+VRLG + LT Sbjct: 1 MAGRRLLPKEGWSLNRAIHDTAAPTGDFTSIQERPLSLPATL-----------GRRRIISLTMEXXXXXXXXXXXXXXXXXVRLELNGSRGELGPAPAGLRXXXXXXXXXXXXXXXXXXXXXQLVGSPQLEHVPPGLRALKLRDYEHPLPQLPDTXXXXXXXXXXXXXXXXXXXVRLLSLYWQPPQPAPPLPARWPTHLERLVYWGKSAVAEPPRIAHLPRTLRQLELNGCEVHARLPQTLQRVRLGPTMARSLT 244
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835Z5Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y5_9STRA) HSP 1 Score: 172 bits (436), Expect = 9.750e-50 Identity = 111/265 (41.89%), Postives = 135/265 (50.94%), Query Frame = 1 Query: 4 ERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRGLRELDLVAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWA--KSDGAPMPVIKR-LPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRV--TVNS 783 ER PAP G + Q+++RMVFTSMA RRLLPK+ W L+R + DT AP + VH L ADST+ ILH LLE ++RR + +LT++GDFTS Q+RPLSLPPSLV L LNGFR RWP LERL+YWA S AP P I R LPP L EL LNGC + LPR LQK++LGR+F+Q+L TG + TVNS Sbjct: 4 ERIRVPAPAGSSTQQEIVRMVFTSMARRRLLPKKYWSLSRLLHDTVAPMIKVH-----LVADSTNSVILHRLLEGTSRRRIRRLTLDGDFTSTQQRPLSLPPSLVRLELNGFRA---------------------------------------------------------------------------RWPVQLERLVYWAIGVSGDAPEPCIDRPLPPKLTELELNGCSIATHLPRMLQKLKLGRSFSQELCLTGSLIATVNS 188
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835YUB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUB3_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.410e-42 Identity = 106/154 (68.83%), Postives = 123/154 (79.87%), Query Frame = 1 Query: 343 GLRELDL--VAFPQLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKS-----DGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQLTFTGRVTVNS 783 GLR LDL A QL+ELPPGLR LKL ++HPL PLXXXXXXXXXXXXXXXXXXXXXXX SL+LYW P PAPPLP RWPAHLERL+YW+KS APMP+I+RLPPTLR L LN CE+ A LP+TLQ++R+GR FT ++ FTGRV +N+ Sbjct: 93 GLRVLDLSRCARMQLNELPPGLRVLKLHKYEHPLRPLXXXXXXXXXXXXXXXXXXXXXXXXSLALYWQTPEPAPPLPARWPAHLERLVYWSKSASGEAGSAPMPIIERLPPTLRYLELNRCELRARLPKTLQELRVGREFTDRVDFTGRVVLNA 246
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A835Z4J5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J5_9STRA) HSP 1 Score: 155 bits (391), Expect = 5.390e-40 Identity = 158/482 (32.78%), Postives = 190/482 (39.42%), Query Frame = 1 Query: 1 MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG--------LREL----------DLVAFP------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLDELPPGLRFLKLRNHDHPLPPLXXXXXXXXXXXXXXXXXXXXXXXRSLSLYWLPPNPAPPLPTRWPAHLERLMYWAKSDGAPMPVIKRLPPTLRELALNGCEVHASLPRTLQKVRLGRNFTQQL---TFTGRV 771 +ER PAP + Q+++RMVFTSMAGRRLLPKE W L+ + DT APT+ VH P+ ADS +LH LLED++RR + LT++GDFTS+Q+RPLSLPPSL L LNGFRG LREL D+V P LD +P GLR L LRN+ H XXXXXXXXXXXXXXXXXXXXXX RSLSLYW P P PPLP RWP HL+RL+Y +S +P+P I+ LPPTL +L LNGCEV SLP+ L+++ LGR FTQ + F GRV Sbjct: 3 VERIRVPAPASSLSQQEIVRMVFTSMAGRRLLPKECWSLSSLLHDTVAPTIEVH----PV-ADSADSAVLHRLLEDTSRRRIRCLTLDGDFTSIQQRPLSLPPSLERLELNGFRGELGAAPSGLRELHLYAGFDRGEDIVPHPLLAELYDSALDSPDDSAIGSEAAWEFVGEMAEIVKAFLPTLRVLVVCGLSQMVSLQALMTKLVETPLPRLQVLSLHNWAVPWEDLLLLLSPVLAKVKLENCLILVLYADIDTPKYTVPALPEGLVSLDLDLCFSHVDLWVFGGLPESLRHLVVVMEGISVRFEAPLPTLLESFRAETLGSGIHIDMGLLPAGLRKLKLAGAEQQPLDRVPAGLRVLMLRNYRHXXXXXXXXXXXXXXXXXXXXXXXXXXXLRSLSLYWRPAFPTPPLPARWPVHLQRLVYCGESHQSPVPGIEHLPPTLGQLTLNGCEVRTSLPQMLEELCLGRQFTQAIDLDNFRGRV 479
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Match: A0A836CD10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD10_9STRA) HSP 1 Score: 153 bits (386), Expect = 7.090e-40 Identity = 85/133 (63.91%), Postives = 97/133 (72.93%), Query Frame = 1 Query: 1 MERAPPPAPTGL-ANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTVSVHVKRAPLKADSTSCTILHGLLEDSARRLVVKLTMEGDFTSVQERPLSLPPSLVSLYLNGFRG---------LRELDLVA 369 MERA PPAP+GL ++QDMMR VFTSMAGRRLLPKEGW LNRAI DTAAPTV + RA + A S + H LLED+ RRLVV+L ++GDFT++QERPLSLPP LV L L GFRG LREL L A Sbjct: 1 MERARPPAPSGLFTDHQDMMRRVFTSMAGRRLLPKEGWSLNRAIHDTAAPTVMYRLYRARVGAGSAPLALPHRLLEDTRRRLVVQLLIDGDFTNIQERPLSLPPFLVRLELYGFRGELGPPPSGGLRELRLCA 133 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349274 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_8086 ID=mRNA_8086|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=888bp|location=Sequence derived from alignment at Contig_40:648951..650456+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGAGCGCGCCCCGCCGCCAGCACCAACAGGCCTTGCAAACTATCAGGAback to top protein sequence of jgi.p|Trimin1|349274 >Trimin1|349274|estExt_Genemark1.C_Ctg_400073 ID=Trimin1|349274|estExt_Genemark1.C_Ctg_400073|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=268bp MERAPPPAPTGLANYQDMMRMVFTSMAGRRLLPKEGWGLNRAIRDTAAPTback to top mRNA from alignment at Contig_40:648951..650456+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_8086 ID=mRNA_8086|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1506bp|location=Sequence derived from alignment at Contig_40:648951..650456+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_40:648951..650456+ >mRNA_8086 ID=mRNA_8086|Name=jgi.p|Trimin1|349274|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=804bp|location=Sequence derived from alignment at Contig_40:648951..650456+ (Tribonema minus UTEX_B_3156 )back to top |