mRNA_8063 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|165852
Unique NamemRNA_8063
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A835YTR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR3_9STRA)

HSP 1 Score: 312 bits (799), Expect = 7.130e-108
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 
Query:    1 MWPYPCIASQVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVHIVKPS 444
            MWPYPCIASQVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVHIVKPS
Sbjct:    1 MWPYPCIASQVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVHIVKPS 148
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A836CJ85_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ85_9STRA)

HSP 1 Score: 197 bits (502), Expect = 9.000e-63
Identity = 101/136 (74.26%), Postives = 111/136 (81.62%), Query Frame = 1 
Query:   28 QVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGG--EGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 429
            QVDVY+S+TTRQRY AA  SLAFDGI+T ESWVFH TAH+N+ KIMC G  VGG  EGGVAIK+GAT+G GVYAATGPATP+ YS   G  +AVILARAL G  G R G GNSWPA+ DWWVFADSAQLLPVYVVH
Sbjct:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTG-GRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVH 135
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A835Z9D1_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D1_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.580e-62
Identity = 99/136 (72.79%), Postives = 112/136 (82.35%), Query Frame = 1 
Query:   28 QVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGG--EGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 429
            QVDVY+S+TTR+RY AA  SLAFDG++T ESWVFH TA +N+ KIMC G  VGG  EG VAIKNGATYGNGVYAATGPATP+ YS   G+ ++VILARAL GR G   G+G+SWPAK DWWVFADSAQLLPVYVVH
Sbjct:    1 QVDVYESETTRRRYAAARESLAFDGVDTTESWVFHGTARENVPKIMCAGFRVGGVGEGSVAIKNGATYGNGVYAATGPATPIAYSARNGS-RSVILARALRGRVGACPGEGDSWPAKLDWWVFADSAQLLPVYVVH 135
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A836CJ18_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ18_9STRA)

HSP 1 Score: 185 bits (469), Expect = 9.510e-58
Identity = 97/136 (71.32%), Postives = 108/136 (79.41%), Query Frame = 1 
Query:   28 QVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTN--QAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 429
            QVDVY+S+TTRQRY AA  SLAFDG++T ESWVFH TA +NI KIMC G  VGGEG VAIK+GA+YGNGVYAATGPATP+TYS  R  N  +AVIL+RAL GR G R G GNSW      WVFADSAQLLPVY+VH
Sbjct:    1 QVDVYESETTRQRYAAARKSLAFDGVDTTESWVFHGTARENIAKIMCAGFRVGGEGCVAIKHGASYGNGVYAATGPATPVTYSD-RNLNGSRAVILSRALRGRVGARQGLGNSWSGASYCWVFADSAQLLPVYMVH 135
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A836CJE6_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE6_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.670e-45
Identity = 81/137 (59.12%), Postives = 95/137 (69.34%), Query Frame = 1 
Query:   19 IASQVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYS-TGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVV 426
            + SQVDVY+S+ TRQ+Y AA  +LAFDG +T E WVFH TA +N+ +IMCGG  +GG   V + NG   G GVYAATGP TP+ YS       QAVILARAL G  G    QG+SW    DWWVFADSAQL+PVYVV
Sbjct:    1 VPSQVDVYESEITRQKYAAARGALAFDGKDTHELWVFHGTAPENVPRIMCGGFRIGGVD-VGVTNGTALGLGVYAATGPDTPIHYSFDDAAERQAVILARALPGEVGAASHQGDSWRGGRDWWVFADSAQLVPVYVV 136
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A836CFU3_9STRA (WWE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU3_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.250e-31
Identity = 71/157 (45.22%), Postives = 89/157 (56.69%), Query Frame = 1 
Query:   13 PCIASQVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQ--AVILARALHGRA----------------GTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 429
            P   ++VDVY+S  TR+ Y    A LA D  +T E+WVFH +   N+ KI  GG  VGG+G +A+KNGA YGNGVY A GP+ P++Y+T  G +    VILARA+ GR                 GT    G       DW VF  +AQLLPVYVVH
Sbjct:  203 PTTVTRVDVYESAATREAYDKMRAQLADDRRDTQETWVFHGSDRKNVKKICVGGFKVGGDG-IAVKNGAIYGNGVYTAIGPSAPLSYATSHGAHSKGCVILARAMKGRHTRQSNWLNSPDAGDSWGTADANGTKPAGTEDWVVFRATAQLLPVYVVH 358
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A835YR34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR34_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.220e-24
Identity = 51/89 (57.30%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:  163 MCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 429
            MCGG  +GG G +AIKNGA +G+G+Y A GP TP  YS   G   AVILARAL G  G  + + +SW A  DWWVF +S QLLP YVVH
Sbjct:    1 MCGGFKIGGTGHLAIKNGAAFGHGLYTAIGPKTPAMYSASSGCC-AVILARALKGTVGEEVCERDSWTAGKDWWVFRNSNQLLPQYVVH 88
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BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A835YPS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.790e-23
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  163 MCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 429
            MCGG  +GG G +AIKNGA +G+G+Y A GP TP  YS   G   AVILARAL G  G  +  G+SW     WWVF +S QLLP YVVH
Sbjct:    1 MCGGFKIGGTGRMAIKNGAAFGHGLYTAIGPKTPAMYSASSGCC-AVILARALKGTVGKEVCAGDSWTVGKHWWVFRNSNQLLPQYVVH 88
[Close]
BLAST of jgi.p|Trimin1|165852 vs. uniprot
Match: A0A835YPP4_9STRA (AAA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.890e-15
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   25 SQVDVYK-SKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGG-EGGVAIKNGATYGNGVYAATGPATPMTYS 276
            ++VDVY+ SK  R+ YQ     L+  G + DE+WVFH T  +N+ +I   G  +GG + GV + NG++YG GVY ATGP TPM Y+
Sbjct: 1323 TRVDVYETSKEVREAYQTKRHELSDQGKSADETWVFHGTRRENVERICAAGFKIGGRDSGVRVANGSSYGQGVYTATGPGTPMGYT 1408
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|165852 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YTR3_9STRA7.130e-108100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJ85_9STRA9.000e-6374.26PARP catalytic domain-containing protein (Fragment... [more]
A0A835Z9D1_9STRA2.580e-6272.79PARP catalytic domain-containing protein (Fragment... [more]
A0A836CJ18_9STRA9.510e-5871.32PARP catalytic domain-containing protein (Fragment... [more]
A0A836CJE6_9STRA5.670e-4559.12PARP catalytic domain-containing protein (Fragment... [more]
A0A836CFU3_9STRA8.250e-3145.22WWE domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YR34_9STRA2.220e-2457.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPS2_9STRA1.790e-2356.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPP4_9STRA4.890e-1546.51AAA domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_40contigContig_40:466792..468720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|165852|e_gw1.40.109.1
DescriptionPoly(ADP-ribose) polymerase catalytic domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D08G@1|root,2SD6R@2759|Eukaryota
Evalue5e-27
Seed ortholog227086.JGI_V11_130672
Hectar predicted targeting categoryother localisation
TranscriptId166174
TrackFilteredModels1
ProteinId165852
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165852gene_8063Tribonema minus UTEX_B_3156 geneContig_40 466792..468720 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8063_1exon_8063_1Tribonema minus UTEX_B_3156 exonContig_40 466792..467047 +
exon_8063_2exon_8063_2Tribonema minus UTEX_B_3156 exonContig_40 468530..468720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8063CDS_8063Tribonema minus UTEX_B_3156 CDSContig_40 466792..467047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|165852Trimin1|165852|e_gw1.40.109.1Tribonema minus UTEX_B_3156 polypeptideContig_40 466792..468720 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8063 ID=mRNA_8063|Name=jgi.p|Trimin1|165852|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=447bp|location=Sequence derived from alignment at Contig_40:466792..468720+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCCTTATCCTTGCATTGCTTCACAGGTGGATGTCTACAAGAGCAA
GACCACGCGCCAACGCTATCAAGCGGCACTCGCGAGCCTAGCTTTCGACG
GCATTAATACAGACGAGTCATGGGTGTTCCATAGCACCGCACACGACAAC
ATCATCAAGATCATGTGTGGAGGGTTGTGCGTTGGCGGCGAGGGCGGTGT
GGCCATAAAAAACGGCGCCACGTACGGCAACGGCGTGTATGCTGCCACTG
GCCCTGCTACGCCCATGACATACAGCACTGGACGGGGCACCAACCAGGCC
GTAATTCTCGCGCGTGCGCTTCACGGCCGCGCCGGCACACGCATTGGCCA
GGGCAACTCGTGGCCCGCCAAATGGGATTGGTGGGTCTTTGCAGACAGCG
CTCAGCTCCTGCCCGTCTACGTTGTTCACATTGTCAAGCCTTCCTAG
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protein sequence of jgi.p|Trimin1|165852

>Trimin1|165852|e_gw1.40.109.1 ID=Trimin1|165852|e_gw1.40.109.1|Name=jgi.p|Trimin1|165852|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=149bp
MWPYPCIASQVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDN
IIKIMCGGLCVGGEGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQA
VILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVHIVKPS*
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mRNA from alignment at Contig_40:466792..468720+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8063 ID=mRNA_8063|Name=jgi.p|Trimin1|165852|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1929bp|location=Sequence derived from alignment at Contig_40:466792..468720+ (Tribonema minus UTEX_B_3156 )
ATGTGGCCTTATCCTTGCATTGCTTCACAGGTGGATGTCTACAAGAGCAA
GACCACGCGCCAACGCTATCAAGCGGCACTCGCGAGCCTAGCTTTCGACG
GCATTAATACAGACGAGTCATGGGTGTTCCATAGCACCGCACACGACAAC
ATCATCAAGATCATGTGTGGAGGGTTGTGCGTTGGCGGCGAGGGCGGTGT
GGCCATAAAAAACGGCGCCACGTACGGCAACGGCGTGTATGCTGCCACTG
GCCCTGGTAACCACAACACTGTCACCCTCCGCATTTGTACTTCAAACTAG
AATCATGAGTAAGCTACACACGTGGTTCTCTGCATGAAGCTATGTTGTCG
ATTGCGCAAACTCTATGGTTCCAAGATTACTTCAAGGTGAATCGGTTAGT
GCTGTTGGGATCATGTATGTACTTAGAAGTATGGTATATGCTGCCTCGTC
AGCGTCGTCAGCACATTTGCTACCAGCTCGTGTGCTTGAGCGCATACTGG
CATCAACGCCAAAAGCCTCGGCACTCTCAATCGCGCCTACTGCGCAATAT
TCACAGACTTTGTGTCACAGACTTTGTGGCGCGTGTTTTGCGCTTGGCAC
ATACATGGTACCTACAGTGTACCTACAGTGCACTATGTAGTGCAATGTAT
ATGCCTGGCGCAATGTGGGCTTGCTGAAAGTATTGTTTGCACACACACAC
TGCGACCCCACTGAAGCTTTGCACGCATTCAGTGGCCCATGCACACGAAG
TGTAGGTAAAGATAAACTCCAAATTAATATGACTGCAGCATGCCCGGCTG
TTGTGGTGCAAACTTGTGAAATATCAGAGGCGCGTCTGCCATGTCACATG
CTGCCAGGCACTGGTGCAAGGTGCTTTTCCCACGTTGTGTTGTTCTGTGT
GTAGGTTGCAGCCGCACTCAGTGTGTTGAGTATAGGCTATGTTGCTAGCT
GTAGCCATGAGCGCTGCATTTTGCGCTCACAAGCTTTGAACTTGTCACAC
TTAGGCTGGCCGTCAACTTGAACTCAAGGAGAATTCTGAGCATCATTTAA
GTAGAACTCAAGGGATGGCGGTCTGAGGACCGCATCTAGGCGCCGCAAGT
TGAACTGCTGCAGCCAAGTTTATCACGTGCACTGTGTGCTGCCGCTTGTG
GGCATTTAACGCTCACACGCCTCCATTCATTGCAGGCCTAAAGTGACGTA
GGTCAGATTCTCACACTTACGAGCCCACTTTAGGATGTTGCGCACTTAGT
TATTGCCCATACTATCAAGCTTGCACTGTGCGCTACCTCGCTGCTCCTGT
TACTTGAAGTTGAATACATGTCTGCGTACCATCATGGCCCAGTGAAGCAT
GTTGAGGGCTAAGAGGCCACACAGCTATGACTGCTAAAACCTGCTCTAAA
GATTATAATATAGTTTAACCTTCAAAGACATATACATATAGAAGTATATT
ATTTTCAACCTTTTGGAATAAATTCTCGCAGCCTTCAACCAACGTCCATC
ACATACATGAACAAACACTTGTTCACCTCACCCGCAAGCCAGTACGACCA
CTAGCTTGCGCTACCGTGTCTGGCACCTCCCACATACACCCATGCAAGGC
CCAGTGCGCGCGCACGCGTGGCAACGCCGATTGTCTGATGCCACGCAGGG
TGACAGCAACCTGCTCTTTCCATCTCAAGCATGCATGCAACACGACACAC
TGACCGCATCTGACTTCCTCGTGTCTGCACGCGTGCAGCTACGCCCATGA
CATACAGCACTGGACGGGGCACCAACCAGGCCGTAATTCTCGCGCGTGCG
CTTCACGGCCGCGCCGGCACACGCATTGGCCAGGGCAACTCGTGGCCCGC
CAAATGGGATTGGTGGGTCTTTGCAGACAGCGCTCAGCTCCTGCCCGTCT
ACGTTGTTCACATTGTCAAGCCTTCCTAG
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Coding sequence (CDS) from alignment at Contig_40:466792..468720+

>mRNA_8063 ID=mRNA_8063|Name=jgi.p|Trimin1|165852|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=447bp|location=Sequence derived from alignment at Contig_40:466792..468720+ (Tribonema minus UTEX_B_3156 )
ATGTGGCCTTATCCTTGCATTGCTTCACAGGTGGATGTCTACAAGAGCAA
GACCACGCGCCAACGCTATCAAGCGGCACTCGCGAGCCTAGCTTTCGACG
GCATTAATACAGACGAGTCATGGGTGTTCCATAGCACCGCACACGACAAC
ATCATCAAGATCATGTGTGGAGGGTTGTGCGTTGGCGGCGAGGGCGGTGT
GGCCATAAAAAACGGCGCCACGTACGGCAACGGCGTGTATGCTGCCACTG
GCCCTGCTACGCCCATGACATACAGCACTGGACGGGGCACCAACCAGGCC
GTAATTCTCGCGCGTGCGCTTCACGGCCGCGCCGGCACACGCATTGGCCA
GGGCAACTCGTGGCCCGCCAAATGGGATTGGTGGGTCTTTGCAGACAGCG
CTCAGCTCCTGCCCGTCTACGTTGTTCACATTGTCAAGCCTTCCTAG
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