mRNA_8026 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349251
Unique NamemRNA_8026
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: A0A835YT26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT26_9STRA)

HSP 1 Score: 740 bits (1910), Expect = 1.350e-265
Identity = 463/463 (100.00%), Postives = 463/463 (100.00%), Query Frame = 1
Query:    1 MGNCVETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSGVSGAPAAAGSKGDREGLNGDVSADDPSIAPAFTTMGSSSRSSSFRPPVHNRLRASGPTPVNGL 1389
            MGNCVETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSGVSGAPAAAGSKGDREGLNGDVSADDPSIAPAFTTMGSSSRSSSFRPPVHNRLRASGPTPVNGL
Sbjct:    1 MGNCVETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSGVSGAPAAAGSKGDREGLNGDVSADDPSIAPAFTTMGSSSRSSSFRPPVHNRLRASGPTPVNGL 463          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 5.410e-102
Identity = 209/405 (51.60%), Postives = 269/405 (66.42%), Query Frame = 1
Query:   13 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----AKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGA-AGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSGVSG 1209
            VE L L+L+TL VKS EAETVRGVRV+V+  CQVKVDA+      ++   N   ++LACQHFLG++++ +  ++L TLEGHQRQILGTLTVEELYKDRAAFS+RVREH+  D++ +GF LVSYTV ++ D  GYM ALGATQTALV REAAEG++KN  EA K V+ ++S    AEA  RA                             +     A A  A +IE ARQ Q VV+EQ  QR  EA  +L+ +  EAL +QK+ EG S A L+ + NKA+ +R KA A+A  +  VG XXXXXXXXXXXXX      R D++  FG AAI   I+D+LP+IA+ IAAPLAKTDKM+F++ +G  AGS+LT D+ +++AQL   V+ LTGVDIT+GL R+V    G
Sbjct:   38 VEILSLELITLTVKSVEAETVRGVRVTVSGTCQVKVDAFT----QQDLEQNLPQITLACQHFLGKTEDQVHQALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHIQEDLNNMGFALVSYTVNQVLDSQGYMEALGATQTALVKREAAEGESKNVSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAKAHEINQVGVXXXXXXXXXXXXXSKVLELRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGSILAQLPETVEALTGVDITKGLDRMVGSGGG 438          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 1.180e-101
Identity = 218/418 (52.15%), Postives = 275/418 (65.79%), Query Frame = 1
Query:   13 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----AKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGA-AGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSGVSGAPAAAGSKGDREG 1248
            VE L L+L+TL VKS EAETVRGVRV+V+  CQVKVDA+     H++   N   ++LACQHFLG++ + +  ++L TLEGHQRQILGTLTVEELYKDRAAFS+RVREH+  D++ +GF LVSYTV ++ D  GYM ALGATQTALV REAAEG++KN  EA K V+ ++S    AEA  RA                             +     A A  A +IE ARQ Q VV+EQ  QR  EA  +L+ +  EAL +QK+ EG S A L+ + NKA+ +R KA A         XXXXXXXXXXXXXXXXXX  R DA+  FG AA+   I+DKLP+IA+ IAAPLAKTDKM+F++ +G  AGS+LT D+  ++AQL   V+ LTGVDIT+GL+R + G  G   +AGS G   G
Sbjct:   16 VEILSLELITLSVKSVEAETVRGVRVTVSGTCQVKVDAFT----HDDLSQNLPQITLACQHFLGKTSDQVHQALLRTLEGHQRQILGTLTVEELYKDRAAFSQRVREHIKEDLNNMGFALVSYTVNQVLDSTGYMEALGATQTALVKREAAEGESKNMSEAKKRVAENESSANMAEATYRAEAHVGVAMEDEKRAAADRDLAIKKAAYKAEVNHAEATAAVAFDIEKARQGQTVVREQTKQRAEEALVMLDVQGTEALTMQKQKEGVSKAMLIEEKNKAEAIRAKADAXXXXXXXXXXXXXXXXXXXXXXXXXXXELRGDAFQHFGNAAVVQSIVDKLPDIAREIAAPLAKTDKMVFIAGEGGGAGSRLTQDVGNILAQLPETVEALTGVDITKGLERYLGG-GGQERSAGSNGPAAG 428          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: A0A7S1DX43_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DX43_HEMAN)

HSP 1 Score: 295 bits (755), Expect = 6.400e-90
Identity = 198/427 (46.37%), Postives = 262/427 (61.36%), Query Frame = 1
Query:   10 CVET---LDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYE--------PVEGHEE-RVLNKK----AVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAE-----NRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSGVS-GAPAAA 1224
            C+ET   L L+L+TLE+KS +AET++GVRV+  S+ Q+KV A          P   H   RV N +    +++LA  HFLG S + I+ +IL T+EGHQRQILGTLTVEE+YKDRAAFSERVRE V  D+ A+GF LVSYTVT I D++GYM +LGATQT LV REAAEG+A+N  EA K V+   +    A AE     + A     XXXXXX                  +A+AEAA  IE  RQQQ +V+        EA+  LE  D +  R +K+AEG+SLA+L+A+ NKA+ VR+ A A+AD++R +G                    +A+A+  +G AA+   I+DKLPE+A A+A PL  T +M+FVS+DG A S +T DI TMM+Q+   V+GLTGVDI   +Q    G + GA A A
Sbjct:   80 CIETCHYLSLELMTLEIKSHKAETIKGVRVNCGSVAQIKVKALMGSTTSGEGPAAQHGTVRVSNTEYDYPSITLASTHFLGESDDRIRQAILRTMEGHQRQILGTLTVEEIYKDRAAFSERVRELVHDDLKAMGFELVSYTVTHIDDENGYMESLGATQTELVKREAAEGRARNQAEARKKVAQYDADAEIATAEAAREAHIAVNQQQXXXXXXDRDLHIKQAAFETQVNKARAEAEAAGKIEKERQQQNIVRXXXXXXXXEAQVHLEITDRQVERTKKEAEGQSLAELLAEKNKAEAVRVNAQAQADQIRMIGEAEAAAKQAAGAAEAHVLEQKAEAWKEYGDAALVQLIVDKLPELASAMAEPLKNTKEMVFVSNDGKAASSMTGDIATMMSQVPATVKGLTGVDIRSVIQDKAGGTALGALAGA 506          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: A0A2R5GCP0_9STRA (Flotillin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCP0_9STRA)

HSP 1 Score: 286 bits (732), Expect = 4.840e-84
Identity = 194/398 (48.74%), Postives = 258/398 (64.82%), Query Frame = 1
Query:   13 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEA-----ENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRL 1191
            V  L L+L+T+E+ S++AET +GVRV V ++ QVKV A+   E      L++ ++ LA QHFLG S++ I  ++  TLEGHQRQILGTLTVEELYK+R+AFSE+V+EHV  D+ A+G+ L SY V ++ D + YM++LG TQTA+V REAAEG AKN+ EA K V+  ++    AEA      + A                             QA+AE+A  IE ARQQQ +V+E   Q  +E    LE  D    R +K+ EGESLA+L+ + N AK + + A AEAD+VR   XXXXXXXXXXXXXXXXXXXX   AY  FG+AA+   I+++LPE+A  IA PL+KT+KM+FVSSDG A S  T D+T M+ QL  AV GLTG D+ + ++RL
Sbjct:  383 VARLPLELMTIEINSEQAETAKGVRVRVRAVAQVKVSAWHMSESGTRGELDEASILLAAQHFLGDSEDQIASALQRTLEGHQRQILGTLTVEELYKNRSAFSEKVKEHVLDDLRAMGYGLASYVVQQVDDANDYMVSLGVTQTAIVKREAAEGSAKNEAEARKRVAAYKADADMAEAIEFQRAHVAVNQQKEAEAESDRDLHLKRAAYDREVNQAQAEAESAGPIEEARQQQSIVRENTRQLQVEESIKLEIADQIVERTKKEKEGESLARLLEEQNHAKSITVIAKAEADKVRXXXXXXXXXXXXXXXXXXXXXXXXXXAYKQFGEAAVVQMIVEQLPELAAKIAEPLSKTEKMVFVSSDGNAASGFTGDVTRMIGQLPNAVHGLTGFDMIEAVKRL 780          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: A0A7R9SVU7_9CHLO (Flotillin-like n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SVU7_9CHLO)

HSP 1 Score: 275 bits (704), Expect = 1.520e-83
Identity = 189/401 (47.13%), Postives = 260/401 (64.84%), Query Frame = 1
Query:   13 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAE-----NRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSG 1200
            V +L+L+++TL ++S+ AE+ +GV++S+ ++ QVKV A +   G  +  +N  +V LA  HF+G++ EDI+ +I  TLEGHQRQI+GTLTVEE+YKDRAAFSERVREHV  D+ ++G  L SYTVT I D++GYM ALGAT T+ V REA EG A+N  EA K VS + +    AEAE     + A                             + +AEAA  IE A Q + V++E   Q+V EA+ LL   + +  R + +  G S A+L+   N AK + + A AEA R+R +GXXXXXXXXXXXXXXXXXXXX   AY  +G AA+   ++++LP IA A+A PL KT+KMIF+S DG+AGS+LT DIT +MA+L   V+ L+GVDI +  +RL +G
Sbjct:   38 VGSLNLEIMTLILQSENAESAKGVKISITAVAQVKVTAMDASSGEVD--IN--SVRLAASHFMGKTDEDIEDAIKRTLEGHQRQIIGTLTVEEIYKDRAAFSERVREHVVEDLKSLGITLASYTVTNIGDENGYMDALGATATSAVKREAEEGTARNVAEAKKVVSRTMADAAVAEAEAMKMAHNAKALQGQAMAEADRDLELKRSRYASEVNKAREEAEAATRIERAIQNKAVIRETTQQQVEEAQVLLLVTEQQVARQKAELAGASEAKLLEQRNIAKSIEVAAEAEAGRIRRLGXXXXXXXXXXXXXXXXXXXXXXQAYKEYGTAALIQSVVEQLPAIASAVAEPLGKTEKMIFISQDGSAGSQLTKDITRIMAELPDTVEALSGVDIKKAFKRLTAG 434          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: A0A7S3LS19_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LS19_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.350e-80
Identity = 211/409 (51.59%), Postives = 262/409 (64.06%), Query Frame = 1
Query:   13 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERV------------------LNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAE-----NRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDI 1170
            V+ L L+L T+ +KS +AET RGVRV+++SI QVKVDA++ +  HE+ +                  LN   + LA QHFLG + E I   +  TLEGHQRQILGTLTVEELYKDR AFS  VR+HVF D++++GF LVSYTV  ISD   YM++LG TQTA+V REAAEGKA+N+ EA K V+   +    AEA      +      XXXXXXXXXXXXX            +A+AEAA  IE+ARQ Q V++E+  Q   E K  L+  D    R +K+ EG + A  +A  +KA  VRI A AE        XXXXXXXXXXXXXXXXXXXX   AY  +GQAA    +I+KLPEIA  +A PL  T+KM+FVSSDG+AGS+LT DIT M+ QL   V+GLTG DI
Sbjct:   38 VDRLSLELYTIHIKSHDAETCRGVRVNISSIAQVKVDAWKDI--HEQPLDADGRSIHAKKGRSSAGDLNNTKIKLAAQHFLGGTNESIVDCLQRTLEGHQRQILGTLTVEELYKDRQAFSASVRDHVFDDLASMGFKLVSYTVNDISDNSDYMLSLGITQTAIVKREAAEGKARNESEAKKKVAEYTAQARIAEAHALREAHVVVAQQXXXXXXXXXXXXXKKASFEREVNQARAEAEAAGPIESARQGQAVIREKTRQIEAEEKIKLDIADQTIAREKKEKEGMAFADKLAQTHKADAVRILAQAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAYKHYGQAATVQMVIEKLPEIAAKMADPLKNTEKMVFVSSDGSAGSQLTGDITRMLGQLPDVVEGLTGFDI 444          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: A0A7S2S6C3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S6C3_9STRA)

HSP 1 Score: 265 bits (677), Expect = 1.810e-79
Identity = 189/399 (47.37%), Postives = 254/399 (63.66%), Query Frame = 1
Query:   13 VETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKA------VSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEA-----ENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQ 1176
            VE L L+L+T+E++S +AET +GVRV+V ++ QVKV A+   +  +    + KA      + LA QHFLG S++ I+ S+  TLEGHQRQILGTLTVEELYK+R+AFS +VREHV  D+SA+G+ L SY V KI D   YM +LG TQTA+V REAAEG+AKN  EA K V++ ++   TAEA      + A                             +A+A AA  IE ARQQQ +V+E+  Q  +E    LE  D    R +K+ EG S+A+L+   N+AK + + AAAE        XXXXXXXXXXXXXXXXXXXX  DAY  +GQAAIT  +++KLPEIA+ I+ PL+KT+KM+F+S+DG + S LT D   ++ Q+   V+ LTG D+T+
Sbjct:   38 VELLSLELMTIEIESVQAETAKGVRVNVRAVAQVKVKAFHLDDNGKRSENSGKAECDTGSIILAAQHFLGDSEDAIRDSLRRTLEGHQRQILGTLTVEELYKNRSAFSTKVREHVLEDLSAMGYGLASYVVQKIDDDSEYMQSLGVTQTAIVKREAAEGEAKNTAEARKKVAVYKAEADTAEAIEFQRAHLAVNLQKEQEAASDRDLNLKKAMYDREVNQARAEATAAGPIEDARQQQHIVRERTKQEQVEQGIKLEIADQIVERTKKEMEGASMARLLQQQNEAKSITVIAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAYKHYGQAAITQMVVEKLPEIAENISKPLSKTEKMVFISNDGNSASALTRDTVNILGQMPHMVKDLTGFDMTK 436          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: C1FEY3_MICCC (Flotillin-like n=2 Tax=Micromonas TaxID=38832 RepID=C1FEY3_MICCC)

HSP 1 Score: 257 bits (657), Expect = 1.360e-76
Identity = 192/426 (45.07%), Postives = 266/426 (62.44%), Query Frame = 1
Query:   10 CVETLD---LDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEA------------------SKAVSLSQSLGTTAEAENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSGVSGAPAAA 1224
            CVET D   LDL+TL +KS EAET +GVR+S++S  Q+K+ + +   GH+   ++   V LA  HFLG+ + DI+ ++  T+EGHQRQ++GTLTVEELYKDRA+FSERV+E V  D+  +GF LVSYTVT++ D++GY+ ALGATQTA V REA EGKAKN+ +A                   +  ++  +    +EAE+                                A+AEAA  IE A Q Q+VVK+Q +Q+V EA+ +L+  + E  R + +AEG S A+L+   N A+  R+ A AEA   + +GXXXXXXXXXXXXXXXXXXXX   AY  + +  + + I +KLP IA A+AAPL    KM FVSSDG+AGS+LT+DI+++M QL   V+ LTGV++ + ++RL    + A  AA
Sbjct:   34 CVETYDRLYLDLMTLSIKSVEAETAKGVRISLSSTAQIKIMSGD---GHK---IDYDKVKLAATHFLGKKRLDIQDAVHRTMEGHQRQVIGTLTVEELYKDRASFSERVKELVDPDLLGMGFALVSYTVTEVDDREGYITALGATQTASVKREAEEGKAKNESQARIXXXXXXXXXXXXXXXXKRTSTVRANEFAASEAESMRDLQMKQQGFQKEVNEAT-------------ARAEAAIRIETAIQNQKVVKQQTLQKVEEAEVMLQVTEREMERAKAEAEGASGAKLIEQKNNAESRRVAAEAEAYEKQQLGXXXXXXXXXXXXXXXXXXXXXQQAYPNYAEERMVTIITEKLPAIADAVAAPLKNAGKMTFVSSDGSAGSRLTNDISSIMGQLPDTVEALTGVNLKRVMKRLEGPAAAAVKAA 440          
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Match: A0A5B8MGZ2_9CHLO (Flotillin-like n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MGZ2_9CHLO)

HSP 1 Score: 236 bits (603), Expect = 6.380e-69
Identity = 156/402 (38.81%), Postives = 233/402 (57.96%), Query Frame = 1
Query:   10 CVE---TLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHEERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYKDRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALVMREAAEGKAKNDMEASKAVSLSQSLGTTAEAENRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-----AKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLEYEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGXXXXXXXXXXXXXXXXXXXXRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRL 1191
            C+E   +L L+++T+ V S +AETV+GV++++ S  QVKV + +  +G+    L+  ++ LA  +FL   ++DI+ ++  TLEGHQRQI+GTLTVEELYKDRAAFSERV EHV  D+  +GF L SYTV +ISD +GYM ALG TQTA+V REAAEG A+N  E+ K ++ + +      AEN                               +     A A +A++IE A+Q+Q +V+ QA Q++ E + +L+ +D   + LQ+        Q+     +A+ + ++A A  ++ R +G                    RA+ Y  FG  AI   +++ LP +A+ IA PL KT+KMIFVSSDG++ S L+ DI    AQL  AV+ LTG+D+ + L+RL
Sbjct:   34 CIEEAHSLSLEIITITVNSIDAETVKGVKINLKSFAQVKVKSTK--DGN----LDINSIKLAATNFLSAREQDIEDALQKTLEGHQRQIVGTLTVEELYKDRAAFSERVYEHVVDDLERLGFELASYTVAEISDNNGYMAALGRTQTAIVAREAAEGTARNQAESRKTLAKANADADIVAAENAERAYIRRQKQEEAQAEADRLLDLRKAKNKLEVNMADAAAASAKDIEYAKQKQAIVEAQATQKLREEEVMLKVKD---IELQQ--------QVNVAAREAEAMTLQAEAIGEKERLIGKAQADIIKMKGDAANEVLQQRAEIYKEFGHDAIVQNVVEMLPSLAREIAQPLGKTEKMIFVSSDGSSASNLSKDIIKAAAQLPDAVESLTGLDLKKALKRL 418          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349251 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YT26_9STRA1.350e-265100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G1I4_ECTSI5.410e-10251.60PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I5_ECTSI1.180e-10152.15PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1DX43_HEMAN6.400e-9046.37Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A2R5GCP0_9STRA4.840e-8448.74Flotillin-1 n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
A0A7R9SVU7_9CHLO1.520e-8347.13Flotillin-like n=1 Tax=Polyblepharides amylifera T... [more]
A0A7S3LS19_9STRA1.350e-8051.59Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2S6C3_9STRA1.810e-7947.37Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
C1FEY3_MICCC1.360e-7645.07Flotillin-like n=2 Tax=Micromonas TaxID=38832 RepI... [more]
A0A5B8MGZ2_9CHLO6.380e-6938.81Flotillin-like n=1 Tax=Chloropicon primus TaxID=17... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_40contigContig_40:45956..53974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349251|estExt_Genemark1.C_Ctg_400006
BRITEko00000,ko00001,ko03036,ko04131,ko04147
KEGG Pathwayko04910,map04910
KEGG koko:K07192
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Preferred nameFLOT2
Descriptionprotein localization to membrane raft
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2268@1|root,KOG2668@2759|Eukaryota
Evalue8.09e-104
Seed ortholog2880.D7G1I4
Hectar predicted targeting categoryother localisation
TranscriptId349573
TrackFilteredModels1
ProteinId349251
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349251gene_8026Tribonema minus UTEX_B_3156 geneContig_40 45956..53974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349251Trimin1|349251|estExt_Genemark1.C_Ctg_400006Tribonema minus UTEX_B_3156 polypeptideContig_40 46152..53974 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8026_11exon_8026_11Tribonema minus UTEX_B_3156 exonContig_40 45956..46535 -
exon_8026_10exon_8026_10Tribonema minus UTEX_B_3156 exonContig_40 47442..47471 -
exon_8026_9exon_8026_9Tribonema minus UTEX_B_3156 exonContig_40 48307..48528 -
exon_8026_8exon_8026_8Tribonema minus UTEX_B_3156 exonContig_40 48933..49060 -
exon_8026_7exon_8026_7Tribonema minus UTEX_B_3156 exonContig_40 49771..49879 -
exon_8026_6exon_8026_6Tribonema minus UTEX_B_3156 exonContig_40 50287..50395 -
exon_8026_5exon_8026_5Tribonema minus UTEX_B_3156 exonContig_40 50948..51099 -
exon_8026_4exon_8026_4Tribonema minus UTEX_B_3156 exonContig_40 51720..51876 -
exon_8026_3exon_8026_3Tribonema minus UTEX_B_3156 exonContig_40 52420..52472 -
exon_8026_2exon_8026_2Tribonema minus UTEX_B_3156 exonContig_40 53114..53150 -
exon_8026_1exon_8026_1Tribonema minus UTEX_B_3156 exonContig_40 53964..53974 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_8026UTR3_8026Tribonema minus UTEX_B_3156 three_prime_UTRContig_40 45956..46151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8026CDS_8026Tribonema minus UTEX_B_3156 CDSContig_40 53964..53974 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8026 ID=mRNA_8026|Name=jgi.p|Trimin1|349251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1588bp|location=Sequence derived from alignment at Contig_40:45956..53974- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAACTGTGTCGAAACTCTGGACCTGGACCTATTGACGCTAGAGGT
CAAGTCCAAGGAAGCCGAGACAGTGCGCGGTGTGAGAGTCAGCGTCAACA
GCATCTGCCAAGTAAAGGTGGATGCGTACGAGCCCGTGGAGGGCCACGAG
GAGCGGGTCCTCAACAAGAAGGCCGTCAGTCTGGCCTGCCAGCACTTCCT
GGGCCGTTCCAAGGAGGACATCAAGATGTCCATCCTGTCCACTCTTGAGG
GACACCAGAGGCAAATCCTGGGCACGCTGACCGTAGAGGAGCTGTACAAG
GACAGGGCTGCCTTCTCAGAGCGCGTACGTGAGCACGTATTTGCCGACAT
CAGCGCCATTGGCTTTGTGCTCGTCAGCTACACCGTCACCAAGATCAGCG
ACCAAGATGGGTACATGATCGCGCTGGGTGCCACCCAGACGGCGCTGGTC
ATGCGCGAAGCTGCTGAGGGCAAGGCCAAGAACGACATGGAGGCCTCCAA
GGCCGTCTCCCTGAGCCAGTCCCTGGGGACGACGGCTGAGGCAGAGAACA
GGGCCAAGGCACACGTCAACGTCACACTCGCCAAGACCACCGAGGCACTG
GCCAATAGGGACCTGAACATCAAGGCAAAGATCAACACGTCACAGGCCAA
GGCGGAGGCGGCCCGCAATATTGAAGCTGCCAGGCAGCAGCAGCAGGTGG
TCAAGGAGCAGGCCATGCAGCGCGTCATTGAGGCCAAGACCCTGCTGGAG
TATGAGGACAACGAGGCCCTCAGGCTCCAGAAGAAGGCAGAGGGAGAGTC
ACTGGCCCAGCTCATGGCGGACGACAACAAGGCCAAGGGTGTTCGCATCA
AGGCAGCGGCGGAGGCAGACCGCGTGCGCGATGTGGGCAAGGCAGAGGCA
GACGTACTCATTGCCAAGGGTGAGGCTGAGGCCAAGGTGCTCAAGCTCAG
GGCCGACGCTTACGCTGCCTTTGGACAGGCTGCCATCACCAGTCAGATCA
TTGACAAGCTGCCTGAGATTGCCAAGGCCATAGCGGCGCCCCTCGCCAAG
ACGGACAAGATGATATTTGTGAGCTCAGACGGCGCCGCAGGCTCCAAGCT
CACCAGCGACATCACCACCATGATGGCTCAGCTCGGCCCCGCCGTGCAGG
GCCTGACCGGCGTCGACATTACGCAGGGCCTGCAGAGGCTTGTGAGCGGC
GTTTCGGGGGCTCCCGCCGCTGCCGGTTCCAAGGGCGACAGGGAGGGGTT
GAACGGCGACGTGAGTGCAGATGATCCCAGCATTGCGCCGGCGTTCACGA
CCATGGGCAGCAGCAGCAGGAGCAGTAGCTTCAGGCCCCCCGTTCACAAC
CGGCTGAGGGCTTCCGGGCCTACCCCTGTTAATGGGCTCTAAGTAGAGTG
CCTGCTGGATTGGACACTGCCTTGAGGGGCAAGAGCGCGTTTTCAACGAC
CAGAGATGTGGATTGCGGCAGGGGAGTGCCTGTGACAGCCTCATCAGCAA
CACAAGCTGGTACATAAGTAGCACAGAGTACTACTAACAGGAAGGAGGGG
GGGGGATGTCAATCAACAGCTCCTGCTCTTGGCACTCA
back to top

protein sequence of jgi.p|Trimin1|349251

>Trimin1|349251|estExt_Genemark1.C_Ctg_400006 ID=Trimin1|349251|estExt_Genemark1.C_Ctg_400006|Name=jgi.p|Trimin1|349251|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=464bp
MGNCVETLDLDLLTLEVKSKEAETVRGVRVSVNSICQVKVDAYEPVEGHE
ERVLNKKAVSLACQHFLGRSKEDIKMSILSTLEGHQRQILGTLTVEELYK
DRAAFSERVREHVFADISAIGFVLVSYTVTKISDQDGYMIALGATQTALV
MREAAEGKAKNDMEASKAVSLSQSLGTTAEAENRAKAHVNVTLAKTTEAL
ANRDLNIKAKINTSQAKAEAARNIEAARQQQQVVKEQAMQRVIEAKTLLE
YEDNEALRLQKKAEGESLAQLMADDNKAKGVRIKAAAEADRVRDVGKAEA
DVLIAKGEAEAKVLKLRADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAK
TDKMIFVSSDGAAGSKLTSDITTMMAQLGPAVQGLTGVDITQGLQRLVSG
VSGAPAAAGSKGDREGLNGDVSADDPSIAPAFTTMGSSSRSSSFRPPVHN
RLRASGPTPVNGL*
back to top

mRNA from alignment at Contig_40:45956..53974-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8026 ID=mRNA_8026|Name=jgi.p|Trimin1|349251|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8019bp|location=Sequence derived from alignment at Contig_40:45956..53974- (Tribonema minus UTEX_B_3156 )
ATGGGTAACTGGTGAGTGCTTCAAGCGCGCGTCAGATTGCTCAACGCAAG TTTTGCGGCATGATTTGTGCAACTAAAGTCATGCAGACTCAACGGCGACA CCGCGCACCGGTACATAGATAGAATATGCTGCTGCTGTCCTTGATAGCTG CGCTGCGTGCTTGAGCCAGGTGTGCATCGTTGCCGTTGTCCGGCTGCATT TGCCAATTTGACACGATCTCGCCCCATGTCCGTTTATTCTCTGTGTGCTG CCTGCAGCATCAAAACCCCGCCAAGCCAGGCTGCTGTAATCAGCGGGCCC TCAGGCACTAGAATGGTTATCGGGCGGTGAGTTATGACACACCATGCGTG GTCGCTGGCGCTGCAGTAGCAGCTTTGTTGCATACGACGCATTTAGGAAT GAGCTCGCAGCACAAGCATGTCAAACGGACTGTCCGAAAGTTAATGCGTC ATGCATCTTGCCACTGTTATCATGCGCCAGTGGAACTATACACCTGCCCT CTCTGGCACCAACGACACTCGAGACTGCTAAAGCAGCTGCACCTCTGTAG CCGTTGCTGGGATTTTGAGTGCCTGACGAACTTGAGGTTTGATAGGCCAG CTTATCTATGCATCTCAAATGGAAATCAAACTCGAAGAAGTTGACTGTCA ATGCCATGAATGACTAGACTACAAAGAACGCTTGCGGTCATTGCTTTGAC GAGTTCTCGGCCTGATCGTTGATGGTCTCAAAGACTCAAGCTGAACGTTG CGACGTGTTGTGCTGACTGGAGCTTGCTGGTTTGTTTGTTGCAGCTCTGC GTGGGCTTGTTACTGTTACGAGAGTGTCGAAACTCTGGACCTGGACCTAT TGACGCTAGAGGTAACTTGCGGCCAGCAATCGCACATGCACTGCTGGTCA ATGGTCGCACAGTCGGGCTTGCTCGTTTAGCTTTGCAAAATCAACTACAG ATCTGTGAACGCAGAATTGACAGATGCCAGTGATAATTGTGTACTTCGAA GTACATGAAGTAGCTTCACACAATTGCAGGCTCAGCTTGCTGACATGGTG ATCACTGTGACATGCAATACGTTGAGAACTCAGGCTTAGTGTTCAATGTT CACTGGTGGTGGCACGTGGCATGTGTCAGCAGCATGCGCAGTTTTGGTAG CAAGCGTAGCGGGGCAGCGGTTGCCACCGACGTGAGCATTGCTGCGACAC TGCATTGCTCAGCTCTAGCCTGAAACCACTCTGTGTGCAATGTGCAGCTT TCCGCTACCAGGTCCCCTGATATAGCATGTCATAGATGCGTGATTGGCTG AGAACTGCGGTGCTACCACTGCTGTCTGGTGCACGCGTCCCTGGGCAGGC CCATAATATTTTCATGTGGCGTGGCGTTGTTCTGAATCGCATGCGTACCA CTGTCAACATGAAGCACCACAGCTGTGTATAAATGCTGTGGAAGCATCTG CCATGCCTCAAAAACAGCGCATGCATTAATTAGACGCCCTCTGTAACTGC AGGTCAAGTCCAAGGAAGCCGAGACAGTGCGCGGTGTGAGAGTCAGCGTC AACAGGTCAGTTCATGACAGCGCCTGAAATGTATGACATAATTAGTGCGC TCATGTATCATGATGCAGACAATGAGCATGTCAATGGGTGAGATTAGTCA GTTCTGTTGGATTGCTGTAGGATGTACTCCGTTGTTGCGCTTGGGGTGTG CGGTGGCATGCCTGATGCGACTGTTGGGCTTGTGAATGCATGCCATCAAT GTGTCAATATGCGGCCCTGCATATAAGGCCCAAGTGTGCCTGTTGGCACA GAAACACACCAGCCTAACCCTAACTATACCGCTAACCCTAACCCTGAAGC AGCGCTGCAGACCATGCTACGGCTTGAGGTCAATGTCCGTGCAAGGTCCT GTTTAAAAAAAGAATCTGGCGGCCACTCAGATAGGGGGCGATTACCATGC ACTGAACTTGCTGTTGGTGCATCTTGAAACGCGCCACTTGCAAGGGCTTT ACAAATGAGTTCTTCAAAAGCGTTGCAATAGTGGGCCTCACTGTGCATCC CTCCTTACCCCCCCCCCCCCCCCCTTGCGCCCCTGCTGCTGTCCTCAGCA TCTGCCAAGTAAAGGTGGATGCGTACGAGCCCGTGGAGGGCCACGAGGAG CGGGTCCTCAACAAGAAGGCCGTCAGTCTGGCCTGCCAGCACTTCCTGGG CCGTTCCAAGGAGGACATCAAGATGTCCATCCTGTCCACTCTTGAGGGAC ACCAGGTACACTTCTCTACAGTAACTGCATTAGCGATTTGTTGGTTTGTT CATTCAGTGTGCTTGTTCGGGCGTTAGGAACTGACGCTTTTGAATTGTTT ATAATCAAGTATGTAATGATGGTTTTTCATGCAGCGATGGGCCGTGGGGG TAGGTGGGTCGGAGGGGGGGGGGGGGGGCAAAGCGGTCTCAGGAGGGGGG GCAAGTTTTGCCTACTCTAACTTGCAATATCTCAATTGCGGTCTCCTGCA CGCGCTTCTGTGCGTGCGCACCACTCCCTCTTGAAAGGCAGACAACAACA ACTTGAAGGATGGCCTTGCAGTCACGAAACTGTATGCTAAATGCAGATGC GTTCATTGTGCATGTGCATTTATGTAGCCTTGCAATCTCAACCTCTCAAC TACCTCAACTACCATCATCGCCAGCGCTGTGCGCCTGCGCGCCTGCAAGG TTGGCGCCTGCCTCTCTGAACCTCATCGGTGATTTTGCAGCACACGCTGC CAGCACTGTGCTCCTGTGCATCCCCAAGTTTACTTCTGCCTTTCTGAGCC TGGTCTATAGAATGCTGTATTCGCCTCATTTGCACCACAGTAACCCTAAC CCTAACCTCTTTGTTATCACTGCAGAGGCAAATCCTGGGCACGCTGACCG TAGAGGAGCTGTACAAGGACAGGGCTGCCTTCTCAGAGCGCGTACGTGAG CACGTATTTGCCGACATCAGCGCCATTGGCTTTGTGCTCGTCAGCTACAC CGTCACCAAGATCAGCGACCAAGATGGGTGAGTGCCGCCATTGTCATTCA AGTTGATTGTCATTGTAGTTGTTTGCGCTCCTCTTGCGTGGTCAATGGCG GGGTAGGTATATGCTATATGCAGTGCCCTGGGGAAGCACCTGTCGGCTGT GCAGTGCGACATAGAAGTATGATGAACACATGGGAGAACATCAACATGCT GAACACGCCTGAGATGCAACAGCCGATAGGTACCGGCATATCGACACGTG CCTCGCCCACACACTTGAACTTCTAATAATCAAACGCGGCATACTGTGGC CTAGCCCTCACTGTTGACTCCCACCTGTAACTCTAAGCGAATGCCTACTG TGATGGGAAATTTGGGCGGGGCACCTCAGCAGTGAGTGGAAGGGCACGTA TCAGGTACAACTGCAATCTACAGCTCCTGCCATACCGGCCGCACTGAAGT GCTCTAGTTCAATCTGCAGGGCATCAATGTTGCGCGCGTGTAATTTCGTG GCTGCGCACGTGTGATGACATGGGTGCTTAAGTTCAAGTTGCTGAGCATG GAAGTTGCTCTGCGTGTGACTCTCTCCAGGTACATGATCGCGCTGGGTGC CACCCAGACGGCGCTGGTCATGCGCGAAGCTGCTGAGGGCAAGGCCAAGA ACGACATGGAGGCCTCCAAGGCCGTCTCCCTGAGCCAGGTGATGACGCTA TGATAAAAATGACTTTATGGATGGACACTGTATGAATAGACACTGCTGTT GGGGCAGCTGCTCATTTGGAGTTTCAGGGCATGCTTGGCGCACCCTGATG CAGAGATGACCGTCTCACCATAATGACCACGATGTTGTGCGCTATGTCAA CAGTTATGAATTCGGAGCAACGTGCACATTGCGCAGTGCATGCCGCTGCC ATTGCAAGTGTTGCCAGCTTGGCTCAGACGCGCGCTGAGGCACTCTGTCG CAGCAGCGCTCATCACTGTGTCGCATCAACGCTCAACACTGTGTCACACC AAAGCTCAACACTGTGTCACAGCAACGCTCATCACCGTGTCGCATCAACG TTCAACACTGTGTCGCTCATCACTCTGTCACATCGCTCTGTGCAGTCCCT GGGGACGACGGCTGAGGCAGAGAACAGGGCCAAGGCACACGTCAACGTCA CACTCGCCAAGACCACCGAGGCACTGGCCAATAGGGACCTGAACATCAAG GCAAGTGCAAACCAGCTTCACCTCGAAGGATTTGGTGGCACCTGACAGTA CACCGTGTGTGAAGTTTGGAAAGCTGGCCCATTCCCTTGTCATTTGACTA TTTCCGCCCCATACCAACATGGTGAAGTACGAAGTAAGATCTTGTGCTGC ACCTCATCTGGGTGGTAGGTCGCAGTGAAGGCTTCACAAAAGTTGCAGCC AAAGCTTCTTGAAATTTCATCTCAAACCCAAAGTCAATGCGCACCATGGC TTTTCCGCTGAAATGTGTGTTCAATGCCCAGTATGGGTTTCCTCTGATAT GTATTGCATGTCTGCAATGTGATTTCCCTTCATTGAGGCTCTTGCGATTC AACTCACCGGTGTGCAAGTAAAGTCAGGCTGCTTAAGCACTCTCGCGTCA ACAGCAATGCGGAGGTTCACGTTGCTGATTGCGTTTGGTATATCATTTGA AGTGTGTTCTGCAATAATGAGCAGATCAACTGAGGAACCCACCCGATTAG AGTACACCAAGTGTCACAGACACGCAATCTTGTAATGTCGTCTCTTCTGC TGAGGTTTGTGCGACCACTATGCAGACCTCTTTGCGCCGTACACAGCAGC ACCATCGAACGCATACATCATACACCGAAGTATGTAAGAAAAAGCACCCG GCTCTTGCTAAAGCACCTGGATCTTGTTGGCATGCGCAACTGCAGGAGGC AGCATACCGAGCAGAGATCAACACGTCACAGGCCAAGGCGGAGGCGGCCC GCAATATTGAAGCTGCCAGGCAGCAGCAGCAGGTGGTCAAGGAGCAGGCC ATGCAGCGCGTCATTGAGGCCAAGACCCTGCTGGAGTATGAGGTGAGGGG TAGCGGTATGTATGGTGGACAACAAGGCTGATACCTACCCGTACCGGACA ACTGGAATATTGGGTATCAATTGAGTAGACTATTGCTGTAATGAGTGTGA GCATATTCTCATGTGTGTATACATTCATCCCTTGCTTGAGTCAGCGCTCG GCAGGTCGTTGCCCATCCGCCGGGTCTTGAAGCGCGTGTCTTCCTATGTG GCAAGTGCATTCTTGGCAATGCCAACCATGATACGTATGCAGACACATGC CCGTGCATTTGTGCTTCACATGCCACCACCACTAACGTCATGTGCATGTG CCATCTGCCCCTGTCCACGGAAGCAGCATTAACACCAGCCGTCTACATAG CTCTAAATCCTATCATGCTGGCCCCTGATGTATGTGCAATGTTCAGGACA ACGAGGCCCTCAGGCTCCAGAAGAAGGCAGAGGGAGAGTCACTGGCCCAG CTCATGGCGGACGACAACAAGGCCAAGGGTGTTCGCATCAAGGCAGCGGC GGAGGCAGACCGCGTGCGCGATGTGGGCAAGGCAGAGGCAGACGTACTCA TTGCCAAGGGTGAGGCTGAGGCCAAGGTGCTCAAGCTCAGGGCCGACGCT TACGCTGCCTTTGGACAGGTGAGGTTCTGACATTGCCGTATGTCACAACT GCAGTGTGGTGCATACTTGTATGCAGGGGAGCAATGAGGAAGTACTGGTT TCACTGACTGGTCTAGACGGTTGAATGCTGGTGTTGCAGTTGTGACTGCT ACACCAGTACTCTGCATGCTACGTAGCATGGTGAACCAGCTGCACAACTA GTGTTGAGGTTAGCTTGCATGTACATGTGCGCTCTACAGCCGTACTCTGC TGAGGTGTGCAACACGAACTACCCTTTTGTTGGTTTTGGGCTTGGGTCAT CTCACAACAGCGCGTCTGCAATCTGTAGGGGGGGGGGGGGGGGCTTTTGT TGAGTGTTGACTGCCTCCGACACTTGTCCTGGGAAAGACACAGTGGCAAT TGGGTATTCTGGTCACAGTCATGCGCTGCACGTTTGTTCCAGCGTGTCAA GGTCTGCACGCACAATGACGTGACAATCTCACAGATGCCTGATGGCATCA TTTCAGTGACCAGGTGTCTGGTGACATCATATCAATGTCCACTTTGCTGG TGACCAACCTAACCCTAACCCTAACCCTGGTGACTAATGACCTAACCCTA ACCCTAACACTTCTATGTATGCACTGCCGGTAACCTGCACGTATGTGCTG CATGACTGGCATGCGCGGGTTTTAACCTGAGTTCTGTTCAAATGATGCCT TGCAAGCTCCACTTCAATGTCATAGCGGGGGTGTTTGTACACGAGCAATT AGCGCATTGCTCGAGCTGACACAACACACCTGTTGCGCTGCAAGCACTCT CACCATGCTAACTGTCCCTGCGTGTTTGTCTCTGCTCTGGTGTGCTCTTA CAGGCTGCCATCACCAGTCAGATCATTGACAAGGTGAGCTGCTGCTGCTC AACACAGTACGCAATGACCAGTATGACTGCGCCCTGTGCCATGACTGTGG TGATCACGCAGCACCTGATTGATCAGGCTCTATTCTTGCCCTGCTTTTGT GTTGTCGTCACTACATGTTTGTTCTCCGTCAATATCATATCACGATCCGC CTATATGTTCTCTTGAGTCTGATCGGCTGCAGATCATCGTAAACTGGCAT GCATTGCAAAACGCAGATGAACATATCTCACCGTTGGTGTCACAAAGCTC AGGGTTAGGCTTCAGCTCCCGCCCTTGAACAAATTGGCATTGGCCACTTG CGTGATGTCATCTGTTCAATGCCGTGGACATTGCTTACCTCAACAGGACC TTCAAGGTACAATGCAATAATAGCAATGTTGTTGAGAAGTGATGGTCAAG TGCATTGCATGATCTATTGCAGTACATTCAGGGCGAGGAACAGCCCAGAT GCTGGATGTCAAGCTTGTTGCTGGAATCTACATACATATACCTGTGGAAA TGTCCTCAATGCACTTGACCATCACTTATTCCAGCAACAAGCTTGACATC CAGCATCTGGGCTGTTTCTTGCCCTGAATGTACTGCATTAGATCATGCAG AGTACAATGCGTTACAGCCACAAGTGGAATATAATAAAAGTACAATGCGT CTGGGCATGTCATGCATCCGCCCATGTGCCATGCCCCCCGGCTGGTTACA GCACTTGCTGCTGGCCATTACTAAGTGCAACCCTGTGCTGTATGATCACA CAACTACACGACTACAGCGCGCAACAGAGTAGACAAACCGTGCTCACGCC CCGCACCGCCCTCCCTCCCCCTTCTCGTGACTCGATTTGACCTGACCTTG CCCCCCCCCCCCACCCCCCCCCCACCCCCCCCGCCGCAGCTGCCTGAGAT TGCCAAGGCCATAGCGGCGCCCCTCGCCAAGACGGACAAGATGATATTTG TGAGCTCAGACGGCGCCGCAGGCTCCAAGCTCACCAGCGACATCACCACC ATGATGGCTCAGCTCGGCCCCGCCGTGCAGGGCCTGACCGGCGTCGACAT TACGCAGGGCCTGCAGAGGCTTGTGAGCGGCGTTTCGGGGGCTCCCGCCG CTGCCGGTTCCAAGGGCGACAGGGAGGGGTTGAACGGCGACGTGAGTGCA GATGATCCCAGCATTGCGCCGGCGTTCACGACCATGGGCAGCAGCAGCAG GAGCAGTAGCTTCAGGCCCCCCGTTCACAACCGGCTGAGGGCTTCCGGGC CTACCCCTGTTAATGGGCTCTAAGTAGAGTGCCTGCTGGATTGGACACTG CCTTGAGGGGCAAGAGCGCGTTTTCAACGACCAGAGATGTGGATTGCGGC AGGGGAGTGCCTGTGACAGCCTCATCAGCAACACAAGCTGGTACATAAGT AGCACAGAGTACTACTAACAGGAAGGAGGGGGGGGGATGTCAATCAACAG CTCCTGCTCTTGGCACTCA
back to top

Coding sequence (CDS) from alignment at Contig_40:45956..53974-

>mRNA_8026 ID=mRNA_8026|Name=jgi.p|Trimin1|349251|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1392bp|location=Sequence derived from alignment at Contig_40:45956..53974- (Tribonema minus UTEX_B_3156 )
ATGGGTAACTGTGTCGAAACTCTGGACCTGGACCTATTGACGCTAGAGGT
CAAGTCCAAGGAAGCCGAGACAGTGCGCGGTGTGAGAGTCAGCGTCAACA
GCATCTGCCAAGTAAAGGTGGATGCGTACGAGCCCGTGGAGGGCCACGAG
GAGCGGGTCCTCAACAAGAAGGCCGTCAGTCTGGCCTGCCAGCACTTCCT
GGGCCGTTCCAAGGAGGACATCAAGATGTCCATCCTGTCCACTCTTGAGG
GACACCAGAGGCAAATCCTGGGCACGCTGACCGTAGAGGAGCTGTACAAG
GACAGGGCTGCCTTCTCAGAGCGCGTACGTGAGCACGTATTTGCCGACAT
CAGCGCCATTGGCTTTGTGCTCGTCAGCTACACCGTCACCAAGATCAGCG
ACCAAGATGGGTACATGATCGCGCTGGGTGCCACCCAGACGGCGCTGGTC
ATGCGCGAAGCTGCTGAGGGCAAGGCCAAGAACGACATGGAGGCCTCCAA
GGCCGTCTCCCTGAGCCAGTCCCTGGGGACGACGGCTGAGGCAGAGAACA
GGGCCAAGGCACACGTCAACGTCACACTCGCCAAGACCACCGAGGCACTG
GCCAATAGGGACCTGAACATCAAGGCAAAGATCAACACGTCACAGGCCAA
GGCGGAGGCGGCCCGCAATATTGAAGCTGCCAGGCAGCAGCAGCAGGTGG
TCAAGGAGCAGGCCATGCAGCGCGTCATTGAGGCCAAGACCCTGCTGGAG
TATGAGGACAACGAGGCCCTCAGGCTCCAGAAGAAGGCAGAGGGAGAGTC
ACTGGCCCAGCTCATGGCGGACGACAACAAGGCCAAGGGTGTTCGCATCA
AGGCAGCGGCGGAGGCAGACCGCGTGCGCGATGTGGGCAAGGCAGAGGCA
GACGTACTCATTGCCAAGGGTGAGGCTGAGGCCAAGGTGCTCAAGCTCAG
GGCCGACGCTTACGCTGCCTTTGGACAGGCTGCCATCACCAGTCAGATCA
TTGACAAGCTGCCTGAGATTGCCAAGGCCATAGCGGCGCCCCTCGCCAAG
ACGGACAAGATGATATTTGTGAGCTCAGACGGCGCCGCAGGCTCCAAGCT
CACCAGCGACATCACCACCATGATGGCTCAGCTCGGCCCCGCCGTGCAGG
GCCTGACCGGCGTCGACATTACGCAGGGCCTGCAGAGGCTTGTGAGCGGC
GTTTCGGGGGCTCCCGCCGCTGCCGGTTCCAAGGGCGACAGGGAGGGGTT
GAACGGCGACGTGAGTGCAGATGATCCCAGCATTGCGCCGGCGTTCACGA
CCATGGGCAGCAGCAGCAGGAGCAGTAGCTTCAGGCCCCCCGTTCACAAC
CGGCTGAGGGCTTCCGGGCCTACCCCTGTTAATGGGCTCTAA
back to top