mRNA_801 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A835ZCH7_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH7_9STRA) HSP 1 Score: 384 bits (987), Expect = 4.650e-135 Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 Query: 1 MSIVGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKPCCDY 579 MSIVGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKPCCDY Sbjct: 1 MSIVGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKPCCDY 193
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A835Z5Q4_9STRA (Ribonuclease n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q4_9STRA) HSP 1 Score: 205 bits (522), Expect = 2.920e-64 Identity = 105/184 (57.07%), Postives = 129/184 (70.11%), Query Frame = 1 Query: 10 VGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSF 561 VGVDEVGRGCL+G V AAA+ LPETFPD+G+ IKDSKKLS +KRA +D YI+ HAIA +G A EID NI AT LAMHRAL+Q+ Q I+ I VDGN F Y EC+V GD SI+AASI+AKV+RD +M+ V +P L Y + N GY T+ H++AI QHG+T+ HRKSF Sbjct: 4 VGVDEVGRGCLFGSVVAAAVALPETFPDDGWTSIKDSKKLSPRKRALLDSYIRMHAIACGIGIAMPHEIDEQNILQATMLAMHRALDQVSTQVQISSITVDGNYFKVYHEVPFECVVKGDTKVLSIAAASIIAKVFRDNMMKTLVTDNPDLQTYGIGTNMGYPTQAHIEAIRQHGLTDQHRKSF 187
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A836CBR9_9STRA (Ribonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBR9_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.240e-62 Identity = 106/185 (57.30%), Postives = 128/185 (69.19%), Query Frame = 1 Query: 10 VGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFK 564 VGVDEVGRGCL G V AAA++LP T+PDEG+ IKDSKKLSAKKR +M YIK +A+AY +G+AS EID NI A LAMHRAL+Q+ I VDG F Y+ HECIV GD+ SI+AASI+AK +RD M E V P L VY++ N GYGT H++ I +HGIT+ HRKSFK Sbjct: 3 VGVDEVGRGCLLGFVAAAAVILPSTYPDEGWMGIKDSKKLSAKKREQMATYIKNNALAYGIGTASVQEIDEHNILQAVMLAMHRALDQVA--IPFESIAVDGTYFNPYRDVPHECIVKGDSTILSIAAASIIAKEFRDNAMRELVHELPDLAVYDICNNMGYGTPAHIEGIRRHGITDHHRKSFK 185
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A6C0I969_9ZZZZ (Ribonuclease HII n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I969_9ZZZZ) HSP 1 Score: 182 bits (462), Expect = 6.650e-55 Identity = 98/195 (50.26%), Postives = 128/195 (65.64%), Query Frame = 1 Query: 7 IVGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKY-------KHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKPC 570 + GVDEV RG G V AA +VLP FPD+ YK+IKDSKKLS KR + YI+ +AI Y VGSAS EID++NI NAT AMHRA+++ ++ K+++DG F Y + E+ECI GD Y SI+AASI+AK Y TL+ + + P LN+Y++ KNKGYGT H+ AI QHGIT HR++F C Sbjct: 15 VAGVDEVARGTFVGPVIAACVVLPHVFPDDTYKEIKDSKKLSKNKREFLAEYIRNNAITYGVGSASVEEIDSVNILNATMKAMHRAVDEAYKKHPFEKLLIDGQYFKGYTPPGLDSEILEYECIPKGDMHYLSIAAASIIAKDYHTTLIYKMTEEHPELNLYDIKKNKGYGTAKHIAAINQHGITSFHRRTFGIC 209
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A6C0KWF9_9ZZZZ (Ribonuclease HII n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KWF9_9ZZZZ) HSP 1 Score: 181 bits (460), Expect = 1.110e-54 Identity = 101/193 (52.33%), Postives = 131/193 (67.88%), Query Frame = 1 Query: 10 VGVDEVGRGCLYGCVTAAAMVL-PETFPDEG-YKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIM-----VDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKP 567 +GVDEVGRG L+G V AAA++L P + + G Y+ I DSKK+S KKR K+ +I + A+A +G ASAAEID +NI AT+LAMHRAL+ I T+ I+ VDGN+F YK ++EC+V GDA Y SI+AASI+AKVYRD + E V + L +Y+L NKGYGT H+ A+ HG E HR SFKP Sbjct: 11 IGVDEVGRGTLFGPVVAAAVILAPISDANSGEYEKIMDSKKISEKKREKIATFIHKEALAVGIGMASAAEIDEINILQATYLAMHRALDNIAANTANTNIVYDLIRVDGNKFKPYKDKKYECVVQGDAKYLSIAAASIVAKVYRDNFILENVATNSNLKIYDLQNNKGYGTAKHLAALKTHGPVEGHRFSFKP 203
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A6C0CF59_9ZZZZ (Ribonuclease HII n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CF59_9ZZZZ) HSP 1 Score: 179 bits (453), Expect = 1.240e-53 Identity = 95/192 (49.48%), Postives = 124/192 (64.58%), Query Frame = 1 Query: 10 VGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYK-----HYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKPC 570 VG+DE GRGCL+G VT AA++ P PD +IKDSKK+ KKR + YI+ +AIA++V EID LNI AT MH+ +++I +Q I I+VDGN F Y + HEC++ GD YKSI+AASILAK +RD + E K + L Y ++KNKGYGTK HMDA+ ++G T HR SFKPC Sbjct: 13 VGIDEAGRGCLFGPVTVAAVIWPHEDPDPNL-EIKDSKKVGEKKRLILKDYIENNAIAWSVQFIPHEEIDKLNILQATMKGMHKCIDEIREQLEIDTILVDGNSFKMYTDENLDYLNHECVINGDNTYKSIAAASILAKTHRDNYIIELSKNNSELEKYGISKNKGYGTKIHMDALKEYGSTNGHRMSFKPC 203
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: UPI001C73E814 (Ribonuclease HII n=1 Tax=Cryomorphaceae bacterium CECT 30217 TaxID=2829795 RepID=UPI001C73E814) HSP 1 Score: 176 bits (447), Expect = 8.060e-53 Identity = 98/184 (53.26%), Postives = 129/184 (70.11%), Query Frame = 1 Query: 13 GVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFK 564 G DE GRGCL G V AAA+VLP+ F ++ + DSKKLS K+R ++ +++ A+A+AVG S EID +NI NA+FLAMHRAL+Q++ TS +I+VDGNRF Y + +H CI+ GD Y SI+AASILAK YRD +M+E +A P Y+ KN GY TK H +AI +HGI E HRKSF+ Sbjct: 14 GCDEAGRGCLAGPVVAAAVVLPDNFSNDL---LNDSKKLSEKQRYQLRPIVEQEALAHAVGIVSHEEIDEINILNASFLAMHRALDQLK--TSFDEILVDGNRFNPYHNKKHHCIIKGDGKYLSIAAASILAKTYRDDIMKELHEAYP---FYDWHKNMGYPTKKHREAIREHGINEHHRKSFR 189
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A6C0J237_9ZZZZ (Ribonuclease HII n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0J237_9ZZZZ) HSP 1 Score: 177 bits (448), Expect = 8.740e-53 Identity = 98/195 (50.26%), Postives = 125/195 (64.10%), Query Frame = 1 Query: 7 IVGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKY-------KHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKPC 570 I GVDE RG L V AA +V P +F DE YK IKDSKKLSAKKR ++ YIK+ AI Y +G+AS EID NI AT AM+RA+ + ++ S KI++DG F Y + HECI+ GDA Y +I+AASILAK Y DT E + +P L Y+L N+GYGT H+ AI ++GIT+ HRK+F PC Sbjct: 14 IAGVDESNRGGLIYDVVAACVVFPNSFDDEKYKAIKDSKKLSAKKRRELAEYIKQTAITYGIGTASREEIDNSNILKATMKAMYRAINEAYKKHSFQKILIDGTHFNGYIPPGIDSEALPHECIIKGDAKYLNIAAASILAKDYHDTSFIELIDKNPELEKYDLRNNQGYGTPKHLAAIKKYGITQFHRKTFSPC 208
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A7S9SVJ7_9VIRU (Ribonuclease HII n=1 Tax=Virus NIOZ-UU159 TaxID=2763270 RepID=A0A7S9SVJ7_9VIRU) HSP 1 Score: 177 bits (448), Expect = 1.020e-52 Identity = 96/198 (48.48%), Postives = 126/198 (63.64%), Query Frame = 1 Query: 7 IVGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKY-------KHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFKPCCDY 579 + GVDEV RG G V +A ++LP FPDE YK IKDSKKLS KKR + YIKE+ I Y +G AS EID +NI NAT AMHRA++ ++T +++DG F Y E+EC+ GD+ Y SI+AASILAK Y ++ V + +L +Y++ KNKGYGTK H +AI HG+TE HRK+F C +Y Sbjct: 15 VAGVDEVARGTFIGPVISACVLLPVEFPDENYKQIKDSKKLSEKKREFLANYIKENCITYGIGEASCKEIDDINILNATMKAMHRAIDIAYKKTKFEYLVIDGPNFKPYIPPGYDNDIIEYECVPKGDSKYLSIAAASILAKDYHTKYIKNLVANNDKLLLYDIQKNKGYGTKKHHEAIKAHGLTEFHRKTFGICRNY 212
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Match: A0A8J7KHP7_9FLAO (Ribonuclease HII n=1 Tax=Faecalibacter rhinopitheci TaxID=2779678 RepID=A0A8J7KHP7_9FLAO) HSP 1 Score: 174 bits (441), Expect = 6.520e-52 Identity = 100/185 (54.05%), Postives = 125/185 (67.57%), Query Frame = 1 Query: 10 VGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKMDLYIKEHAIAYAVGSASAAEIDALNIQNATFLAMHRALEQIEQQTSIAKIMVDGNRFLKYKHYEHECIVGGDAVYKSISAASILAKVYRDTLMEERVKADPRLNVYELAKNKGYGTKTHMDAIAQHGITEDHRKSFK 564 VG DE GRGCL G V AAA++L E F +E I DSKKL+ K R + L+I+E+A+A+AVG + EID +NI NA+FLAMHRAL+Q+ T I I+VDGNRF KYK HECI+ GD Y +I+AASILAK YRD +M+ K D + Y +NK Y TK H +AIA+ G T HR SFK Sbjct: 12 VGCDEAGRGCLAGPVVAAAVILSEEFNNE---IINDSKKLNEKTRNSLRLFIEENALAWAVGIVTPQEIDQINILNASFLAMHRALDQLN--TPIDIIVVDGNRFNKYKDIPHECIIKGDGKYMNIAAASILAKTYRDEIMD---KLDLKYPAYNWKQNKAYPTKAHREAIAKFGTTPHHRLSFK 188 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156973 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_801 ID=mRNA_801|Name=jgi.p|Trimin1|156973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_2:1484076..1484657+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCATCGTCGGTGTTGATGAGGTTGGCCGCGGTTGCTTGTATGGCTGback to top protein sequence of jgi.p|Trimin1|156973 >Trimin1|156973|e_gw1.2.138.1 ID=Trimin1|156973|e_gw1.2.138.1|Name=jgi.p|Trimin1|156973|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=194bp MSIVGVDEVGRGCLYGCVTAAAMVLPETFPDEGYKDIKDSKKLSAKKRAKback to top mRNA from alignment at Contig_2:1484076..1484657+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_801 ID=mRNA_801|Name=jgi.p|Trimin1|156973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=582bp|location=Sequence derived from alignment at Contig_2:1484076..1484657+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:1484076..1484657+ >mRNA_801 ID=mRNA_801|Name=jgi.p|Trimin1|156973|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=582bp|location=Sequence derived from alignment at Contig_2:1484076..1484657+ (Tribonema minus UTEX_B_3156 )back to top |