mRNA_797 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156966
Unique NamemRNA_797
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A835Z5E6_9STRA (SWIB/MDM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E6_9STRA)

HSP 1 Score: 921 bits (2381), Expect = 0.000e+0
Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 1
Query:    1 MDISDAEAQPVNAGVPEASVPVVPDVPVEDVVNACGDVTGPYDVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAEPVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGTASKPKTPRAPRIKTLHPPNHWMDMEGMLVRLCTEQLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIRAIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFPPPKGDKKPKAEKAKGVKKLAGTKKAKKA 1551
            MDISDAEAQPVNAGVPEASVPVVPDVPVEDVVNACGDVTGPYDVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAEPVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGTASKPKTPRAPRIKTLHPPNHWMDMEGMLVRLCTEQLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIRAIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFPPPKGDKKPKAEKAKGVKKLAGTKKAKKA
Sbjct:    1 MDISDAEAQPVNAGVPEASVPVVPDVPVEDVVNACGDVTGPYDVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAEPVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGTASKPKTPRAPRIKTLHPPNHWMDMEGMLVRLCTEQLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIRAIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFPPPKGDKKPKAEKAKGVKKLAGTKKAKKA 517          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A835Z0E7_9STRA (SWIB/MDM2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E7_9STRA)

HSP 1 Score: 400 bits (1027), Expect = 1.090e-131
Identity = 234/480 (48.75%), Postives = 290/480 (60.42%), Query Frame = 1
Query:  100 ACGDVTGPYDVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAE-PVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGT---ASKPKTPRAPR------IKTLHPPNHWMDMEGMLVRLCTEQLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLE-GALDEPCVVDLFIAIRAIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFPPPKGDKKPKAEKA 1506
            A   VTGPYDV++LNTPWHR T  +L +LP+ ++AA+D+TLFMW DS  AG T ++M+K+GFTFHSVA+ILN+AE P   P                                 XXXXXXXX      A A GT        TP+A        IK +HPP  W   EG L R CTEQLW+  RG GAP+A KVK  P+QV T  ++ K++ K RK S++CPP+W+CTRPSEFF  +L Q    V  IE+FGDS++Q++D+FGPGIP  FVPAL G  GDVG +K AL G+GKVAVR++CAKLHKAL   +  AL +  V +   AI           DKW   +  T+ V+S V DSF   YPQRKKK             K RHGIA PGPVS  L+EFFGEP GT +ARTDVV RIN YI+ + L+ GK FKLD+KL+KL G  E   +  YF+LH LL+PHF   +G    KA  A
Sbjct:   42 AFNSVTGPYDVLLLNTPWHRYTPAELAELPLGEIAADDSTLFMWCDSVTAGVTTKIMRKWGFTFHSVASILNIAETPTEAPA--------------------------------XXXXXXXXPVPAPDANASGTDMDVDSAPTPKAXXXXXXXXIKNIHPPTWWSPNEGALTRSCTEQLWVGVRGEGAPVAPKVKANPFQVKTLPDFPKKATKARKGSSSCPPEWYCTRPSEFFEEVLAQFPASVKTIELFGDSLRQNIDAFGPGIPSMFVPALSGTDGDVGTIKAALGGLGKVAVRSVCAKLHKALHSTDKDALQDKGVQEFITAIDD---------DKWAATDKQTVTVISSVADSFLAAYPQRKKKTKRVRDPASGE--KARHGIACPGPVSKELLEFFGEPDGTLVARTDVVKRINQYIKTNVLKDGKFFKLDDKLKKLLGDVE---KSSYFDLHALLSPHFNKVQGSAPKKARLA 475          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A836CLG3_9STRA (SWIB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG3_9STRA)

HSP 1 Score: 387 bits (994), Expect = 1.590e-126
Identity = 232/508 (45.67%), Postives = 296/508 (58.27%), Query Frame = 1
Query:   19 EAQPVNAGVPEASVPVVPDVPVEDVVNACGDVTGPYDVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAEPVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGTASKPKTPRAPR------IKTLHPPNHWMDM-EGMLVRLCTEQLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSE--FFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIRAIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFPPPK--GDKKPKAEKAK 1509
            EA    A + +  V  V D+PV DV  A   +TG YDV++LNTPWHR +  +L +LP+  +A +++TLFMW DSA AG T ++M+K+GFTFHSVA+ILN+A P   P P  E V  AA   E                                   DG+  + K PR         IK++HPP  W  + EG   R CTEQLW+  +GAGA L  K K  P+QV    ++ K++ K RK SATCPP+W+CTRPSE  FF  +L Q  P   AIE+FGDS++  VD+FGPGIP  FVPAL G  GDVG++K AL+G+GKV VR++CAKLHK L   + +  E  VV  FIA        G   DKW   + +T+ ++S V DSF   Y QRKKK             + RHGI  PGPVS  L+EFFGEP GT +A TDVV RIN YI+  N + GK FKLDEKL+KL G  E   +  YF+LH LL+PHF   K  G   P+A+KA+
Sbjct:   19 EAPATPAALVKPVVVPVADIPVGDVTGAFNALTGSYDVLLLNTPWHRFSPAELAELPVGAIAGDNSTLFMWCDSATAGITTKVMRKWGFTFHSVASILNIAAP---PAPL-EPVEPAALEPEDEATESGAQTDME---------------------VDGS-DRAKAPRXXXXXXXXXIKSIHPPAWWSAVAEGAATRACTEQLWVGVKGAGAALCPKAKLAPFQVIDTADFPKKASKARKASATCPPEWYCTRPSELNFFETVLSQYGPSAKAIELFGDSIRNKVDAFGPGIPSMFVPALSGTDGDVGVIKGALEGLGKVTVRSVCAKLHKVLHSSDKSAPEEKVVQDFIA------SIGD--DKWAAKDKSTVTIISNVADSFLAAYLQRKKKAKRARDAASGE--RPRHGIVCPGPVSKDLLEFFGEPDGTLVASTDVVKRINEYIKSQNPKDGKFFKLDEKLKKLLGDIE---KSNYFDLHALLSPHFLKVKKSGAAAPEAKKAR 487          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A835Z4J7_9STRA (SWIB domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J7_9STRA)

HSP 1 Score: 249 bits (636), Expect = 4.930e-73
Identity = 158/469 (33.69%), Postives = 230/469 (49.04%), Query Frame = 1
Query:   94 VNACGDVTGPYDVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAE-PVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGTASKPKTPRAPRIKTLHPPNHWMDME---GMLVRLCTEQLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIRAIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFPPPKGDKK 1488
            ++A    T  +D + +NTPWH ++ + L  LPI+ M A+DA LF+W  +  AG  A L++K+GFTFHSVA ++++AE P   P+PA   +                                           DG     K PR PR+K +  P+ W+  E     L R C+EQLWMA RG G P  +K + LP+QV    + AK+S K R PS  CPP WF  RP  +   +   L+ +    E+FG+    D+  F P +P   +P L    G V + K+A+   GKVA+R++ AKL + + +     D   +VD        A  A G  + W   +   L ++S V D+       R ++             K   GIA PGPVS  L+EFFG P+G  +ART+ V+++NAY++ + L  GK    D+KL+ L    E +    YF+L  LL+PHFP  K  KK
Sbjct:   69 IHASVQSTPKFDCLYINTPWHALSEEQLASLPISAMTADDAALFLWCSTTTAGIAASLIEKWGFTFHSVAAVVSIAEQPSNTPLPAPAQL------------------------------------------EDGA----KKPRGPRVKVIAAPDWWIANELPGAQLSRSCSEQLWMAVRGTGPPANSKCRLLPFQVVARPDLAKKSNKARHPSPWCPPQWFSRRPVSYLQQVKDSLAAEAKIAELFGEDAHDDMWVFSPCLPTLVIPPLKSSEGAVAIAKDAIGLDGKVALRSIAAKLRRNIGEESWDEDVTAIVDR-------ASNAAG--EDW--RDTAHLRLISWVADNLLKHKAARPRRGKRKAAATDEQRPK--FGIAAPGPVSEELLEFFGLPSGQLLARTEAVAKLNAYVKENGLTQGKQIVFDDKLKALLKPGENDA-VTYFSLCRLLSPHFPVSKRAKK 477          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A835Z6L0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6L0_9STRA)

HSP 1 Score: 207 bits (527), Expect = 2.140e-57
Identity = 174/425 (40.94%), Postives = 217/425 (51.06%), Query Frame = 1
Query:  127 DVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAEPVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGTASKPKTPRAPRIKTLHPPNHWMD-----MEGMLVRLCTEQLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIRAIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQR-----KKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFK 1371
            D + LNTPWHRM+   L  LP+  +A  DA LFMW  SA A + A L+ ++GF+F SV                 E V    A  EXXXXXXXXXXXXXXXXXXXXXXXXXXXX    APA   A      R PR+K +HP   W       +     R C+EQLWMA RG    L A+ +P PYQ+  +   AK++ K R+ SA CPPDW C RP +FF   +  L     A+E+FGD  +    + GPG+P+  VP L    GDVG+ K A+    K  +R   AKL  A A       EP                   V  W   +  +L ++S   ++    YP R     KK+             + RHGIA PGPVSA L+ F GEP G  +ART+VV R+NAYI   NLR GK  K
Sbjct:   49 DCLFLNTPWHRMSASALASLPLGALAKPDAALFMWCGSATAAAAAGLLGEWGFSFRSV-----------------EAVVGYTAKPEXXXXXXXXXXXXXXXXXXXXXXXXXXXX----APAAVKA------RGPRVKAVHPQEWWTPEGSDPLPAAAFRDCSEQLWMAVRGEPV-LDARRRPDPYQITLDPSLAKKTSKARRASAWCPPDWACARPGDFFDRCVAVLPKGAVAMELFGDVTRPGAWALGPGVPRGVVPPLTSDEGDVGVAKAAIVAPRKAGLRAAAAKLRAAAAS-----GEPXXXXXXXXXXXXXXXXASGVC-W--SDADSLRLLSWSAEAKLAAYPSRRGRKGKKRAKGDAEAAAADPNRPRHGIAAPGPVSAELLAFLGEPEGALLARTEVVKRVNAYITGRNLRNGKAIK 437          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: D8LPF5_ECTSI (EsV-1-129 n=2 Tax=root TaxID=1 RepID=D8LPF5_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.470e-37
Identity = 130/472 (27.54%), Postives = 196/472 (41.53%), Query Frame = 1
Query:  124 YDVIMLNTPWHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSVANILNVAEPVAVPMPAAEDVAAAAASSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPADGTASKPKTPRAP--RIKTLHPPNHWMDMEGMLVRLCTEQLWMATRGAGAPLAAKVK-----PLPYQVNTNLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIRAI--------------AKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLR-AGKHFKL--DEKLQKLFGKAEGEGEFGYFNLHELLAPHFP 1467
            YDV+ LNTPW+++T++ +GK+ ++ +  ++A ++MW D+        L K  GF FHSV  I +VA     P P A   A   + ++                                A  D    K  T RA   R   L  P +W  +        T +  +     G  +  K+       LPYQV    +  K+S  + K +    P+W C RP EF    +  L P V  +E+FG ++++  DS GP +P  F PA G  +G    + + +  M KV ++ LC+ L K +AQ + A D    V  F A+ A                     S D  +P     L V+S    +       R+K+             +  HGIAKP  VS  L +F G   G  ++RT  V  +N Y++ + L+   K  ++  DE L KL       G   YF +  LL PHFP
Sbjct:   19 YDVLYLNTPWNKLTVEQMGKIDLSSLTKDEALMYMWADTYSIKFATELFKLQGFKFHSVYQICDVATYPPAPEPKAAGEAVPTSVADVMHGSDKDTDGPVDSPAEA-------------AVVDKAIVKTTTKRAKKQRCPPLSLPKYWKSVTHRGSTRPTAEFLLLGHKGGRDVLDKLMNEKSGTLPYQVVHKPDLGKKSRSVPKKNINLDPEWVCDRPEEFLDTAISHLKPSVKILEVFGSTLKRMTDSVGPNVPGGFCPAYGSNAGLANCLNKVMRSMKKVQLQGLCSALSK-IAQADDA-DRATKVKEFRAVDASWTAIVTALTDMKSPVAYDWSSKDADLPAEWLRLAVLSFAQKNMADFGDLRRKRKRRKTNKDSP---RACHGIAKPVVVSKQLTDFLGLEEGHMVSRTHTVKLLNNYVKANGLQNPAKKIQIVPDEALLKLLCPPADFGPITYFKMCSLLGPHFP 472          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A0K9RUC9_SPIOL (SWIB/MDM2 domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RUC9_SPIOL)

HSP 1 Score: 57.0 bits (136), Expect = 2.600e-6
Identity = 43/123 (34.96%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 1111 LLVVSKV--VDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFK---LDEKLQKLFGKAEGEGEFGYFNLHELLAPHF 1464
            LL  +K   +DS  T+  +R KK                 GI KP PVS  L +F G P   E  RT+VV ++ AYI+LH+L+  ++ +    DEKL+ LF    G+   G+  + +LL+ HF
Sbjct:   14 LLAAAKTSTIDSSATKTAKRSKKPAASDSGAPK-------GILKPVPVSPTLRDFIGAP---EAPRTEVVKKVWAYIKLHDLQNPENKREIICDEKLKALFS---GKDRVGFLEIAKLLSVHF 123          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A5J9W891_9POAL (SWIB/MDM2 domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9W891_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 2.720e-6
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 1213 KERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAG---KHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHF 1464
            K+  GI  P PVS  L  F G P   EIART+ + RI AYI+ HNL+     K    D+KL+ LF    G    G+  + +LL PHF
Sbjct:   61 KKPTGITLPKPVSPTLQAFVGAP---EIARTEALKRIWAYIKQHNLQDPADKKTINCDDKLKVLFA---GRERVGFLEIAKLLNPHF 141          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: UPI001FB11503 (upstream activation factor subunit UAF30-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB11503)

HSP 1 Score: 54.7 bits (130), Expect = 2.070e-5
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 1213 KERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKL---DEKLQKLFGKAEGEGEFGYFNLHELLAPHF 1464
            +E  GI KP  VS  + +F G     EIART V+  I AYI+ HNL+  ++ K+   D+ L+K+F   E   + G+  + +L+ PHF
Sbjct:   55 REPRGIMKPRRVSPEMQDFLG--GVPEIARTQVLKEIWAYIKHHNLQDPENKKIIICDDNLKKIFSDKE---QVGFLEIAKLIGPHF 136          
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Match: A0A1D6GGL7_MAIZE (SWIb domain-containing protein (Fragment) n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6GGL7_MAIZE)

HSP 1 Score: 53.1 bits (126), Expect = 2.840e-5
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1
Query: 1216 ERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAGKHFKL---DEKLQKLFGKAEGEGEFGYFNLHELLAPHF 1464
            E  GI +P  VS AL    G+P    I RT+V+ R+ AYI+ HNL+     K+   DEKL+ LF    G    G+  + +LL PHF
Sbjct:   16 EPTGITQPKSVSPALQAIVGDPV---IPRTEVLKRLWAYIKEHNLQDPSDKKVVVCDEKLKVLFA---GRERVGFLEIAKLLNPHF 95          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156966 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835Z5E6_9STRA0.000e+0100.00SWIB/MDM2 domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z0E7_9STRA1.090e-13148.75SWIB/MDM2 domain-containing protein n=2 Tax=Tribon... [more]
A0A836CLG3_9STRA1.590e-12645.67SWIB domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z4J7_9STRA4.930e-7333.69SWIB domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835Z6L0_9STRA2.140e-5740.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPF5_ECTSI1.470e-3727.54EsV-1-129 n=2 Tax=root TaxID=1 RepID=D8LPF5_ECTSI[more]
A0A0K9RUC9_SPIOL2.600e-634.96SWIB/MDM2 domain-containing protein n=2 Tax=Spinac... [more]
A0A5J9W891_9POAL2.720e-642.53SWIB/MDM2 domain-containing protein n=1 Tax=Eragro... [more]
UPI001FB115032.070e-537.93upstream activation factor subunit UAF30-like n=1 ... [more]
A0A1D6GGL7_MAIZE2.840e-540.70SWIb domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1458918..1460471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156966|e_gw1.2.369.1
GOsGO:0000120,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
DescriptionSWI complex, BAF60b domains
COG categoryK
Max annot lvl35493|Streptophyta
EggNOG OGsCOG5531@1|root,KOG1946@2759|Eukaryota,37VQK@33090|Viridiplantae,3GJIH@35493|Streptophyta,4JQTH@91835|fabids
Evalue1.86e-08
Seed ortholog3983.cassava4.1_018755m
Hectar predicted targeting categoryother localisation
TranscriptId157288
TrackFilteredModels1
ProteinId156966
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156966gene_797Tribonema minus UTEX_B_3156 geneContig_2 1458918..1460471 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_797_1exon_797_1Tribonema minus UTEX_B_3156 exonContig_2 1458918..1460471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_797CDS_797Tribonema minus UTEX_B_3156 CDSContig_2 1458918..1460471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156966Trimin1|156966|e_gw1.2.369.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1458918..1460471 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_797 ID=mRNA_797|Name=jgi.p|Trimin1|156966|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1554bp|location=Sequence derived from alignment at Contig_2:1458918..1460471- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCAGCGACGCCGAGGCCCAGCCCGTGAATGCGGGCGTGCCTGA
GGCTAGCGTGCCTGTGGTCCCTGATGTGCCCGTTGAAGATGTGGTCAATG
CCTGTGGCGACGTGACCGGACCGTACGACGTCATCATGCTCAACACTCCT
TGGCACAGGATGACAATGGATGACCTGGGCAAGCTGCCTATTGCCGACAT
GGCAGCTGAGGACGCCACGCTTTTCATGTGGACTGATTCAGCCATGGCGG
GAAGCACGGCGCGTCTGATGAAGAAGTACGGCTTCACTTTCCACTCTGTG
GCGAACATCCTCAACGTCGCCGAGCCCGTCGCAGTGCCGATGCCTGCTGC
TGAGGACGTTGCTGCTGCAGCTGCTTCCTCCGAGTCTGCTGAGTCTGCTG
CTGCCGAGTCTGCTGAGCCTGCGGCCGCCGAGCCTGCTGAGCCTGCGGCC
GCCGAGCCTGCCGAACCCGCCTCTGATGACGCTCCTGCCGACGGCACCGC
CAGCAAGCCCAAGACTCCTCGTGCGCCCCGCATCAAGACTCTCCACCCGC
CCAATCACTGGATGGACATGGAGGGCATGCTAGTGAGGTTGTGCACGGAG
CAGCTCTGGATGGCCACTCGCGGCGCTGGAGCTCCACTCGCGGCCAAGGT
CAAGCCTCTCCCTTACCAAGTCAACACCAACCTCGAGTACGCCAAGAGGT
CCTGCAAGCTGCGCAAGCCATCTGCTACATGCCCTCCGGACTGGTTCTGC
ACCAGGCCATCCGAGTTTTTCACCAACATCCTCAAGCAGCTATCCCCTGA
TGTCACCGCCATCGAGATGTTCGGCGACTCTGTTCAGCAGGACGTCGACT
CATTTGGACCTGGTATTCCGCAGTTCTTTGTGCCTGCTCTCGGCGGGTTC
AGTGGAGACGTCGGCATGGTCAAGGAGGCCCTGGACGGCATGGGCAAGGT
TGCGGTCCGCACCCTCTGCGCTAAGCTACACAAGGCACTCGCTCAACTCG
AAGGTGCGCTGGATGAGCCCTGTGTTGTAGACCTGTTTATCGCCATCCGC
GCCATCGCGAAGAAGGCTGGTGGCAGTGTAGACAAGTGGGTCCCCGACAA
CCCGACAACCCTCCTCGTCGTTTCCAAGGTCGTCGACAGCTTCTTTACCG
AGTACCCTCAGCGCAAGAAGAAGAACAAGCGTGCTCGCGACGACAGCGAC
AGCGACAAGAACAAGGAGAGGCATGGCATCGCGAAGCCCGGTCCAGTTAG
CGCTGCGCTCGTAGAATTCTTTGGCGAGCCGGCGGGTACTGAGATAGCCA
GGACCGACGTTGTCTCACGTATCAACGCTTACATTCGTCTGCACAATCTC
CGCGCCGGCAAGCACTTCAAGCTAGATGAGAAGCTCCAGAAGCTGTTTGG
CAAGGCGGAGGGCGAGGGCGAGTTTGGTTACTTTAACTTGCACGAGCTGC
TAGCGCCTCACTTCCCTCCCCCCAAGGGTGACAAGAAGCCCAAGGCGGAG
AAGGCAAAGGGCGTCAAGAAGCTCGCTGGCACCAAGAAGGCCAAGAAGGC
CTAG
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protein sequence of jgi.p|Trimin1|156966

>Trimin1|156966|e_gw1.2.369.1 ID=Trimin1|156966|e_gw1.2.369.1|Name=jgi.p|Trimin1|156966|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=518bp
MDISDAEAQPVNAGVPEASVPVVPDVPVEDVVNACGDVTGPYDVIMLNTP
WHRMTMDDLGKLPIADMAAEDATLFMWTDSAMAGSTARLMKKYGFTFHSV
ANILNVAEPVAVPMPAAEDVAAAAASSESAESAAAESAEPAAAEPAEPAA
AEPAEPASDDAPADGTASKPKTPRAPRIKTLHPPNHWMDMEGMLVRLCTE
QLWMATRGAGAPLAAKVKPLPYQVNTNLEYAKRSCKLRKPSATCPPDWFC
TRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGF
SGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDEPCVVDLFIAIR
AIAKKAGGSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKNKRARDDSD
SDKNKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNL
RAGKHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFPPPKGDKKPKAE
KAKGVKKLAGTKKAKKA*
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mRNA from alignment at Contig_2:1458918..1460471-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_797 ID=mRNA_797|Name=jgi.p|Trimin1|156966|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1554bp|location=Sequence derived from alignment at Contig_2:1458918..1460471- (Tribonema minus UTEX_B_3156 )
ATGGACATCAGCGACGCCGAGGCCCAGCCCGTGAATGCGGGCGTGCCTGA GGCTAGCGTGCCTGTGGTCCCTGATGTGCCCGTTGAAGATGTGGTCAATG CCTGTGGCGACGTGACCGGACCGTACGACGTCATCATGCTCAACACTCCT TGGCACAGGATGACAATGGATGACCTGGGCAAGCTGCCTATTGCCGACAT GGCAGCTGAGGACGCCACGCTTTTCATGTGGACTGATTCAGCCATGGCGG GAAGCACGGCGCGTCTGATGAAGAAGTACGGCTTCACTTTCCACTCTGTG GCGAACATCCTCAACGTCGCCGAGCCCGTCGCAGTGCCGATGCCTGCTGC TGAGGACGTTGCTGCTGCAGCTGCTTCCTCCGAGTCTGCTGAGTCTGCTG CTGCCGAGTCTGCTGAGCCTGCGGCCGCCGAGCCTGCTGAGCCTGCGGCC GCCGAGCCTGCCGAACCCGCCTCTGATGACGCTCCTGCCGACGGCACCGC CAGCAAGCCCAAGACTCCTCGTGCGCCCCGCATCAAGACTCTCCACCCGC CCAATCACTGGATGGACATGGAGGGCATGCTAGTGAGGTTGTGCACGGAG CAGCTCTGGATGGCCACTCGCGGCGCTGGAGCTCCACTCGCGGCCAAGGT CAAGCCTCTCCCTTACCAAGTCAACACCAACCTCGAGTACGCCAAGAGGT CCTGCAAGCTGCGCAAGCCATCTGCTACATGCCCTCCGGACTGGTTCTGC ACCAGGCCATCCGAGTTTTTCACCAACATCCTCAAGCAGCTATCCCCTGA TGTCACCGCCATCGAGATGTTCGGCGACTCTGTTCAGCAGGACGTCGACT CATTTGGACCTGGTATTCCGCAGTTCTTTGTGCCTGCTCTCGGCGGGTTC AGTGGAGACGTCGGCATGGTCAAGGAGGCCCTGGACGGCATGGGCAAGGT TGCGGTCCGCACCCTCTGCGCTAAGCTACACAAGGCACTCGCTCAACTCG AAGGTGCGCTGGATGAGCCCTGTGTTGTAGACCTGTTTATCGCCATCCGC GCCATCGCGAAGAAGGCTGGTGGCAGTGTAGACAAGTGGGTCCCCGACAA CCCGACAACCCTCCTCGTCGTTTCCAAGGTCGTCGACAGCTTCTTTACCG AGTACCCTCAGCGCAAGAAGAAGAACAAGCGTGCTCGCGACGACAGCGAC AGCGACAAGAACAAGGAGAGGCATGGCATCGCGAAGCCCGGTCCAGTTAG CGCTGCGCTCGTAGAATTCTTTGGCGAGCCGGCGGGTACTGAGATAGCCA GGACCGACGTTGTCTCACGTATCAACGCTTACATTCGTCTGCACAATCTC CGCGCCGGCAAGCACTTCAAGCTAGATGAGAAGCTCCAGAAGCTGTTTGG CAAGGCGGAGGGCGAGGGCGAGTTTGGTTACTTTAACTTGCACGAGCTGC TAGCGCCTCACTTCCCTCCCCCCAAGGGTGACAAGAAGCCCAAGGCGGAG AAGGCAAAGGGCGTCAAGAAGCTCGCTGGCACCAAGAAGGCCAAGAAGGC CTAG
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Coding sequence (CDS) from alignment at Contig_2:1458918..1460471-

>mRNA_797 ID=mRNA_797|Name=jgi.p|Trimin1|156966|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1554bp|location=Sequence derived from alignment at Contig_2:1458918..1460471- (Tribonema minus UTEX_B_3156 )
ATGGACATCAGCGACGCCGAGGCCCAGCCCGTGAATGCGGGCGTGCCTGA
GGCTAGCGTGCCTGTGGTCCCTGATGTGCCCGTTGAAGATGTGGTCAATG
CCTGTGGCGACGTGACCGGACCGTACGACGTCATCATGCTCAACACTCCT
TGGCACAGGATGACAATGGATGACCTGGGCAAGCTGCCTATTGCCGACAT
GGCAGCTGAGGACGCCACGCTTTTCATGTGGACTGATTCAGCCATGGCGG
GAAGCACGGCGCGTCTGATGAAGAAGTACGGCTTCACTTTCCACTCTGTG
GCGAACATCCTCAACGTCGCCGAGCCCGTCGCAGTGCCGATGCCTGCTGC
TGAGGACGTTGCTGCTGCAGCTGCTTCCTCCGAGTCTGCTGAGTCTGCTG
CTGCCGAGTCTGCTGAGCCTGCGGCCGCCGAGCCTGCTGAGCCTGCGGCC
GCCGAGCCTGCCGAACCCGCCTCTGATGACGCTCCTGCCGACGGCACCGC
CAGCAAGCCCAAGACTCCTCGTGCGCCCCGCATCAAGACTCTCCACCCGC
CCAATCACTGGATGGACATGGAGGGCATGCTAGTGAGGTTGTGCACGGAG
CAGCTCTGGATGGCCACTCGCGGCGCTGGAGCTCCACTCGCGGCCAAGGT
CAAGCCTCTCCCTTACCAAGTCAACACCAACCTCGAGTACGCCAAGAGGT
CCTGCAAGCTGCGCAAGCCATCTGCTACATGCCCTCCGGACTGGTTCTGC
ACCAGGCCATCCGAGTTTTTCACCAACATCCTCAAGCAGCTATCCCCTGA
TGTCACCGCCATCGAGATGTTCGGCGACTCTGTTCAGCAGGACGTCGACT
CATTTGGACCTGGTATTCCGCAGTTCTTTGTGCCTGCTCTCGGCGGGTTC
AGTGGAGACGTCGGCATGGTCAAGGAGGCCCTGGACGGCATGGGCAAGGT
TGCGGTCCGCACCCTCTGCGCTAAGCTACACAAGGCACTCGCTCAACTCG
AAGGTGCGCTGGATGAGCCCTGTGTTGTAGACCTGTTTATCGCCATCCGC
GCCATCGCGAAGAAGGCTGGTGGCAGTGTAGACAAGTGGGTCCCCGACAA
CCCGACAACCCTCCTCGTCGTTTCCAAGGTCGTCGACAGCTTCTTTACCG
AGTACCCTCAGCGCAAGAAGAAGAACAAGCGTGCTCGCGACGACAGCGAC
AGCGACAAGAACAAGGAGAGGCATGGCATCGCGAAGCCCGGTCCAGTTAG
CGCTGCGCTCGTAGAATTCTTTGGCGAGCCGGCGGGTACTGAGATAGCCA
GGACCGACGTTGTCTCACGTATCAACGCTTACATTCGTCTGCACAATCTC
CGCGCCGGCAAGCACTTCAAGCTAGATGAGAAGCTCCAGAAGCTGTTTGG
CAAGGCGGAGGGCGAGGGCGAGTTTGGTTACTTTAACTTGCACGAGCTGC
TAGCGCCTCACTTCCCTCCCCCCAAGGGTGACAAGAAGCCCAAGGCGGAG
AAGGCAAAGGGCGTCAAGAAGCTCGCTGGCACCAAGAAGGCCAAGAAGGC
CTAG
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