mRNA_7951 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7951 ID=mRNA_7951|Name=jgi.p|Trimin1|100042|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=660bp|location=Sequence derived from alignment at Contig_94:199404..200948- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGTTGTGGTGGCAGGCCCTACGACAACAAAAATACTTCCTGCGACTGTC
CGCACTTTCTCTAATGGCCGTGCTGCTTCTCCTGCCAGCAGTACGTCCAG
ATGCTGAGGTCAACGTGCCTCGGGGATGGAGGAAGTCCGACAGGTTTTAC
GGCTTCAGGTACGAGGTGCGAGGGCTGGTGCAGGACGTTGGATTCTTGCA
GGCTGCTGTGCATGCAGCAGAAGAGCTGGGTTGCTTTGGCTGGATCCAGA
ACTCCAAGGTGAACACCGTGGTGGGAGAAGCCCGCTGCAGCAAGCTGGAT
GGACCCAAGATGGTGGAGTTTCTGAGATTCGGCCCCGACGACGCGCGCGT
AACAGAGGTGCTGGTGAAGCCCTATGAGGACACCAAGATCAAGTTACACT
TCGCGTCCTTCCTGGCACTGCCAGATGAGCGCAAGACATGTTTCAGGGCC
ATACCGCACCAGTGTCCAGAGTACGCCGGGCCAGTAGCGCCACCAGCAGA
CACCAGCTACCAAGATCACTCCCTCACTGCTGATGTCAGGGCCAAAAGCG
AATTGTGACAGCATGGGGCAGCACAAGACGCTGAAAGAATGAATTCGTCA
CACAACATCCACTGATGTCAGCAGCACGGTGGTCCGCAAGCCAGTCTCTC
TGTTTGAGAC
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protein sequence of jgi.p|Trimin1|100042

>Trimin1|100042|CE100041_32 ID=Trimin1|100042|CE100041_32|Name=jgi.p|Trimin1|100042|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=165bp
MAVLLLLPAVRPDAEVNVPRGWRKSDRFYGFRYEVRGLVQDVGFLQAAVH
AAEELGCFGWIQNSKVNTVVGEARCSKLDGPKMVEFLRFGPDDARVTEVL
VKPYEDTKIKLHFASFLALPDERKTCFRAIPHQCPEYAGPVAPPADTSYQ
DHSLTADVRAKSEL*
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mRNA from alignment at Contig_94:199404..200948-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7951 ID=mRNA_7951|Name=jgi.p|Trimin1|100042|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1545bp|location=Sequence derived from alignment at Contig_94:199404..200948- (Tribonema minus UTEX_B_3156 )
TGGTTGTGGTGGCAGGCCCTACGACAACAAAAATACTTCCTGCGACTGTC CGCACTTTCTCTAATGGCCGTGCTGCTTCTCCTGCCAGCAGTACGTCCAG ATGCTGAGGTCAACGTGCCTCGGGGATGGAGGAAGTCCGACAGGTTTTAC GGCTTCAGGTGATGCGTATAGGTGGTAGTTTGCCTGCCTGATAGCTTTGC TACTTGTAAGTAGCTGCCACAGTTTCACTCAATTATCGCACGCGACCGAG TGCACACGAGCATATACAGCATGGTTTCATCGGGCTGGTTGTGGTGGCAG GCCCTACGACGACAAGGAAGATGCTTTTTTCGACTGGCCGCACTTTCTTT GGTGGCCGTGCTGCTTCTCCTGCCAGCAGTACGTCCAGATGCTGAGGTCA ACGTGCCTCGGGGATGGAGGAAGTCCGACAGGTTTTACGGATTCAGGTGA TGTGTTGTGTACAGTAGTAGTTTGCCTCTGCCTGATAGCTTTGCGCCTTG TTGATAGCAGCCACTGTTTCACTCGATTCTCGCTGATATATATGACTGTC TGGCTCTCCAGGTACGAGGTGCGAGGGCTGGTGCAGGACGTTGGATTCTT GCAGGTGAGCAACTCCTGATGGGCGCCTTGCCTGCACTGTTGCATCTGCG CAAGTGTGTGGCTTCTGAGACTCAGGTATTCATCTCTCCGCTCCTCTGCT GCTGTCATTTTTGCTAGGCTGCTGTGCATGCAGCAGAAGAGCTGGGTTGC TTTGGCTGGATCCAGAACTCCAAGGTGAACACCGTGGTGGGAGAAGCCCG CTGCAGCAAGCTGGATGGACCCAAGATGGTGGAGTTTCTGAGATTCGGCC CCGACGACGCGCGCGTAACAGAGGTAGTGTGTACAACAAGAGCTTGTGTG ATTCGAGCACGCTATGTAGGCATGTGCCATTGACTGCCACCACCTCGTCT CCAATTCAAATCATGCATCGAGCATGTCTGAATGCGCAGTGGGCATGGCA TCATCCTGGAAGGACCCGAAGTTGATATTTTTGTCCTTGTGGCCCCGCGC AGGTGCTGGTGAAGCCCTATGAGGACACCAAGATCAAGTTACACTTCGCG TCCTTCCTGGCACTGCCAGATGAGCGCAAGACATGTTTCAGGTGAGGTGA AGTGACGCAGCCCCACCCCCATGTAGTTGCCTGATCAATATGCTGCTGCA CCACTGTAATAGTCACAGCTTGACAGCCTGTGTGTGATCCGTGCACTTGC CGCTGCAGCTGTAAATAACTATTGCTGTGGTGCTTACTTGCGCATTGCCG TGTCTGATGCACGCCGCGCGCTGCTCTCCAGGGCCATACCGCACCAGTGT CCAGAGTACGCCGGGCCAGTAGCGCCACCAGCAGACACCAGCTACCAAGA TCACTCCCTCACTGCTGATGTCAGGGCCAAAAGCGAATTGTGACAGCATG GGGCAGCACAAGACGCTGAAAGAATGAATTCGTCACACAACATCCACTGA TGTCAGCAGCACGGTGGTCCGCAAGCCAGTCTCTCTGTTTGAGAC
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Coding sequence (CDS) from alignment at Contig_94:199404..200948-

>mRNA_7951 ID=mRNA_7951|Name=jgi.p|Trimin1|100042|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=495bp|location=Sequence derived from alignment at Contig_94:199404..200948- (Tribonema minus UTEX_B_3156 )
ATGGCCGTGCTGCTTCTCCTGCCAGCAGTACGTCCAGATGCTGAGGTCAA
CGTGCCTCGGGGATGGAGGAAGTCCGACAGGTTTTACGGCTTCAGGTACG
AGGTGCGAGGGCTGGTGCAGGACGTTGGATTCTTGCAGGCTGCTGTGCAT
GCAGCAGAAGAGCTGGGTTGCTTTGGCTGGATCCAGAACTCCAAGGTGAA
CACCGTGGTGGGAGAAGCCCGCTGCAGCAAGCTGGATGGACCCAAGATGG
TGGAGTTTCTGAGATTCGGCCCCGACGACGCGCGCGTAACAGAGGTGCTG
GTGAAGCCCTATGAGGACACCAAGATCAAGTTACACTTCGCGTCCTTCCT
GGCACTGCCAGATGAGCGCAAGACATGTTTCAGGGCCATACCGCACCAGT
GTCCAGAGTACGCCGGGCCAGTAGCGCCACCAGCAGACACCAGCTACCAA
GATCACTCCCTCACTGCTGATGTCAGGGCCAAAAGCGAATTGTGA
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