mRNA_7927 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351571
Unique NamemRNA_7927
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA)

HSP 1 Score: 486 bits (1252), Expect = 6.670e-171
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 2
Query:   32 MGRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKGP 799
            MGRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKGP
Sbjct:    1 MGRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKGP 256          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA)

HSP 1 Score: 392 bits (1006), Expect = 1.600e-133
Identity = 203/254 (79.92%), Postives = 224/254 (88.19%), Query Frame = 2
Query:   38 RFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKGP 799
            +FT KVAI+TGASSGIGLA AQQMAAEGAKVVLAARGQ++L KAV SIKAAGGEAIGV MDAS+DEDNKRLVD  LETYG++N+SFINAG++     +EV  ++LD+LYD NVKGVAYALKYQL AIEKSGGKGSVVINSSCAG  VTAFP+F+ NGPYASTKAA DILMKYAAIEAIDHGTRVNSIAPG + T L + PE+ FD +GK VHLMPRAGRPEEIARCVCFLASDDASFVTGTV+ ADGG SLKGP
Sbjct:    2 QFTGKVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVHLAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEAPEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLKGP 255          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A835YKB8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB8_9STRA)

HSP 1 Score: 373 bits (957), Expect = 4.860e-126
Identity = 201/257 (78.21%), Postives = 220/257 (85.60%), Query Frame = 2
Query:   38 RFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAG---GEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKGP 799
            +FT KVAI+TGASSGIGLA AQQ+AAEGAKVVLAARG+E+LD+AV +IKA+      AIGV MDASVDEDNKRLVD ALETYG +NVSFINAG++R    +EV  ++LD LYD NVKGVAYALKYQL AIEKSGGKGSVVINSSC G  VTAFP+F+ NGPYASTKAA DILMKYAAIEAIDHGTRVNSIA G V T L   PE+AF+EMGK V LMPRAGRPEEIARCVCFLASD+ASFVTGTVL ADGG SLKGP
Sbjct:    2 QFTGKVAIITGASSGIGLAAAQQLAAEGAKVVLAARGKERLDEAVNNIKASRRMLAVAIGVVMDASVDEDNKRLVDTALETYGLLNVSFINAGVHRAKPISEVDASMLDTLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCLGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAAGAVFTNLVGAPEEAFEEMGKMVGLMPRAGRPEEIARCVCFLASDEASFVTGTVLTADGGSSLKGP 258          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A835Z2Q8_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Q8_9STRA)

HSP 1 Score: 350 bits (899), Expect = 2.070e-117
Identity = 189/256 (73.83%), Postives = 215/256 (83.98%), Query Frame = 2
Query:   32 MGRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKGP 799
            MGRFT  VA+VTGASSGIGLATAQQMAAEGAKVV+AAR +++LDKA     A GG+AIGV MDAS+DEDNKRLVD+AL+ YG +NVSFINAG++R +VAAEVT T+LDELYDTNVKGVAYALK+QLAAIE+SGG GSVVINSSCAG NVTAFP       +A  +A A +  +  AIEAIDHGTRVNS+APGVV T L D P DA++ +  +VHLMPR+GRPEEIARCVCFLASDDASFVTG VL ADGGFSLKGP
Sbjct:    1 MGRFTGTVAVVTGASSGIGLATAQQMAAEGAKVVMAARTKDRLDKA-----ANGGDAIGVVMDASLDEDNKRLVDEALKAYGQINVSFINAGVHRGSVAAEVTGTMLDELYDTNVKGVAYALKHQLAAIERSGGNGSVVINSSCAGSNVTAFPA----ADHAHPRACARMQHRAQAIEAIDHGTRVNSVAPGVVRTNLVDRPADAYEALAASVHLMPRSGRPEEIARCVCFLASDDASFVTGAVLLADGGFSLKGP 247          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A836C9I6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I6_9STRA)

HSP 1 Score: 310 bits (795), Expect = 1.300e-101
Identity = 165/249 (66.27%), Postives = 197/249 (79.12%), Query Frame = 2
Query:   50 KVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLKG 796
            KV +VTG SSGIGLATAQ +A +G  VVLAARGQ++L+KAV  IKA+GGEA GV  DAS DEDNK+LVD  LE Y  ++VSFINAGIYR A   EVT+  +DEL+ TNVKGVA+ALKYQL AIEKSGG GS+VINSS AG  V   P F  NGP++++KA AD+LM++AAIEA  HGTRVNSIAPG+V TG  +  ++ +D +G T+ LM RAGRPEEIA CVCFL SD+ASFVTGTV+ ADGG S+KG
Sbjct:    2 KVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAANMSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIKG 250          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A836CAF4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF4_9STRA)

HSP 1 Score: 299 bits (765), Expect = 4.770e-97
Identity = 164/254 (64.57%), Postives = 195/254 (76.77%), Query Frame = 2
Query:   32 MGRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLK 793
            MGRFT +V +VTG SSGIGLATA+Q+A EG KVVLAARG+E+L+KAV  IKA+GGEA GV  DAS ++DNKRLVD  L+ Y  ++VSFINAGI+R A A +VT  +LDEL   NVK VA  LKYQL AI KSGG G++VINSS AG NV     F  NGPYA+TKAAAD+LM++AA+EA   GT++NSIAPGVV T L D P+DA++E GK  ++M R GRPEEIA    FL SDDASFV GTVL ADGG +LK
Sbjct:    1 MGRFTGRVCVVTGGSSGIGLATAEQLAREGGKVVLAARGKERLEKAVDGIKASGGEAFGVVADASKEDDNKRLVDAVLDKYHRLDVSFINAGIHRAAKAVDVTDEMLDELLAANVKSVALGLKYQLPAIAKSGGGGAIVINSSIAGSNVKTRKEFVGNGPYAATKAAADMLMRHAAVEASKQGTQINSIAPGVVKTNLLDLPDDAYEEFGKGANVMHRTGRPEEIAH---FLLSDDASFVMGTVLTADGGHALK 251          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.150e-78
Identity = 138/254 (54.33%), Postives = 182/254 (71.65%), Query Frame = 2
Query:   38 RFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGL-GD-FPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLK 793
            RF  +VA+VTGASSG+GLATA Q+AAEGAKVV+ AR ++KL+ A A IKA GG+ + V  D S D  NK +VD AL  YG ++++F+NAG Y  A   +VT+ + D+++D NVK VA+ LK+ L AIEKSGG GSV+INSS      TA P F   G Y+++KAAAD++MKYAAIEA  H TRVNSIAPG+V T + G+   +++++     V L+ R G PEEIA  VCFLASD+A+F+TG+V   DGG+ LK
Sbjct:    5 RFEGRVAVVTGASSGMGLATAAQLAAEGAKVVMVARTKDKLEAAAADIKAKGGDVLAVAADVSKDAANKEIVDAALSAYGKLHIAFLNAGTYGGAPVDQVTEELFDKIFDVNVKSVAFGLKHVLPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAIMGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGLK 258          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA)

HSP 1 Score: 245 bits (626), Expect = 6.870e-76
Identity = 139/260 (53.46%), Postives = 172/260 (66.15%), Query Frame = 2
Query:   38 RFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAE-----VTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGL----GDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSL 790
            RF  KVAIVTGAS+GIGLAT  Q+  EGAKVVL +R Q+KLD AVA IKA  G+   +  D S +  NK +VD A+  YG ++V+F NAG +  A  AE     VT  ++D + DTN K V +  KY L AIEKSGG GS+V+NSS AG   +A  V     PYA++KAA D+L+KYAA+EA  H TRV S+APG V T +    GD  +    +M K + LM RAGRPEE+AR VCFL SDDASFVTG+V   DGG S+
Sbjct:    5 RFEGKVAIVTGASTGIGLATTAQLVREGAKVVLVSRSQDKLDAAVAEIKAKDGQVTTLAADVSKEATNKAMVDLAMSKYGRLDVAFFNAGTFAGAPFAEASLGHVTNEMVDTVMDTNFKSVVFGFKYALPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTDMAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDGGASI 264          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: A0A835YUN2_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN2_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.020e-73
Identity = 134/254 (52.76%), Postives = 176/254 (69.29%), Query Frame = 2
Query:   38 RFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGL-GD-FPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLK 793
            RF  +VA+VTGASSG+GLATA+Q+AAEGA+VV+ AR Q+KL+ A A IKAAGG         S D  N+ +V  AL TYG ++V+F+NAG Y  A   +VT+ + ++++D NVK VA+ LK+ L AIE+SGG GSVV+NSSC G    A P F   G YA +KAAAD++M+YAAIEA  H TRVNS+APG+V T L G+   E  + +    V L+ RAG   E++  VCFLASD+A F+TG+V   DGG+ LK
Sbjct:    6 RFEGRVALVTGASSGMGLATARQLAAEGAQVVMVARTQDKLEAAAADIKAAGGXXXXXXXXVSTDAANEEMVKAALSTYGKLHVAFLNAGTYGGAPVDQVTEELFNKIFDANVKSVAFGLKHVLPAIERSGGGGSVVVNSSCMGLRAPANPTFTGAGLYAGSKAAADMIMRYAAIEASKHKTRVNSVAPGIVRTELMGEGMTEQGYHDFAAPVSLVGRAGTSNEVSALVCFLASDEARFITGSVHEIDGGWRLK 259          
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 3.800e-67
Identity = 122/249 (49.00%), Postives = 172/249 (69.08%), Query Frame = 2
Query:   53 VAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAI-EKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGL-GDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLK 793
            VA+VTGASSGIG ATA   A EGAKVV+AAR + KLD+  A IK+AGGE   V  D S + D K++VD A+E +G ++V+F NAG+++T    ++T+  +D++ +TNVK +A+ LKYQ+ A+ + +GGKGS+++N+S  G   +A P     G Y+++KAAA++LMKYAAIE    G RVNS+APG+V T + GD P D          L+PR   PEEIA+ V FLAS+DA+ VTG+    DGG+++K
Sbjct:    9 VALVTGASSGIGKATATAFAKEGAKVVIAARREVKLDEVAAEIKSAGGEVAVVVGDVSKEMDCKKMVDTAIEKFGGLHVAFNNAGVFKTVPFVDITEDTIDDILNTNVKSIAWCLKYQIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMK 257          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351571 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRJ1_9STRA6.670e-171100.00Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YQ90_9STRA1.600e-13379.92Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YKB8_9STRA4.860e-12678.21Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835Z2Q8_9STRA2.070e-11773.83Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836C9I6_9STRA1.300e-10166.27Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A836CAF4_9STRA4.770e-9764.57Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835ZCI5_9STRA2.150e-7854.33Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835ZEC4_9STRA6.870e-7653.46Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A835YUN2_9STRA1.020e-7352.76Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
D8LQS1_ECTSI3.800e-6749.00Short-chain dehydrogenase/reductase SDR n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:87932..91260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351571|estExt_Genemark1.C_Ctg_940016
Descriptionoxidation-reduction process
COG categoryIQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1028@1|root,KOG0725@2759|Eukaryota
Evalue5.73e-70
Seed ortholog2880.D8LQS1
Hectar predicted targeting categoryother localisation
TranscriptId351893
TrackFilteredModels1
ProteinId351571
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351571gene_7927Tribonema minus UTEX_B_3156 geneContig_94 87932..91260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351571Trimin1|351571|estExt_Genemark1.C_Ctg_940016Tribonema minus UTEX_B_3156 polypeptideContig_94 88338..91229 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7927_5exon_7927_5Tribonema minus UTEX_B_3156 exonContig_94 87932..88583 -
exon_7927_4exon_7927_4Tribonema minus UTEX_B_3156 exonContig_94 89135..89356 -
exon_7927_3exon_7927_3Tribonema minus UTEX_B_3156 exonContig_94 90678..90827 -
exon_7927_2exon_7927_2Tribonema minus UTEX_B_3156 exonContig_94 90954..91097 -
exon_7927_1exon_7927_1Tribonema minus UTEX_B_3156 exonContig_94 91221..91260 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7927UTR3_7927Tribonema minus UTEX_B_3156 three_prime_UTRContig_94 87932..88337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7927CDS_7927Tribonema minus UTEX_B_3156 CDSContig_94 91221..91229 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7927UTR5_7927Tribonema minus UTEX_B_3156 five_prime_UTRContig_94 91230..91260 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7927 ID=mRNA_7927|Name=jgi.p|Trimin1|351571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1208bp|location=Sequence derived from alignment at Contig_94:87932..91260- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGCACTCTCAGATCAGCAGACCCTCGAAGATGGGCAGGTTTACCGACA
AGGTGGCGATTGTAACAGGCGCCAGCAGCGGCATTGGCCTTGCAACAGCA
CAGCAAATGGCTGCTGAGGGTGCCAAGGTCGTGCTGGCAGCGAGGGGCCA
AGAGAAATTGGACAAGGCAGTCGCCAGCATCAAGGCTGCTGGCGGCGAGG
CCATCGGCGTGACCATGGACGCGTCCGTCGACGAGGACAACAAGCGCTTG
GTTGACAAGGCACTGGAGACCTACGGTGCTGTTAACGTCAGCTTCATCAA
CGCTGGCATCTACAGAACCGCTGTGGCTGCAGAGGTCACCAAGACGATTC
TTGATGAGCTTTACGACACCAATGTCAAGGGCGTGGCATACGCCCTCAAG
TACCAGCTTGCTGCCATTGAGAAATCTGGCGGCAAGGGGTCTGTGGTCAT
CAACAGCAGCTGCGCGGGTGGCAACGTAACTGCCTTCCCGGTGTTCAGGT
CCAATGGCCCCTACGCATCCACCAAAGCGGCTGCCGACATCCTGATGAAG
TACGCGGCGATCGAGGCCATTGACCACGGCACGCGCGTCAACAGCATTGC
CCCCGGCGTGGTCGCCACCGGCCTCGGCGACTTTCCCGAGGACGCCTTCG
ACGAGATGGGCAAGACAGTGCACCTCATGCCGCGCGCGGGGCGCCCCGAA
GAGATTGCGCGCTGCGTGTGCTTCCTCGCCAGCGACGACGCGTCCTTCGT
CACGGGCACCGTGCTTTACGCGGACGGCGGTTTCAGCCTCAAGGGGCCCT
GAACTGTCGCCGCGCCCCTGCCGCGTGTGCGGGTGGTACGCTGCCTGGCC
TTGCGCAACGGCGCGAGCCTTCTGTGCGTCAAGGCGCTGATGCGCTATTT
ACGCCCCTGGTAGCGGTGAAGTACGCGTGTCAGTGATTTATTTTGCTTGA
GGCCGCAGCCTTCAGAATCTGTCAAGTACCGGCTAGAGCAGCTGCGCAGC
GCTTGCGAGTGACTGGAGAAGCAGGCAGCTAGTGTTGTGGTACTGTCAAG
GTTTGTGCAGCATGGGTTTGTACTGGGGATTATGGGTTTGATTTACAATC
CCTTGCCCTCACTGTGAGGGCTTGTCAGTGGTAAGGGGCGTGCAAGGTTT
AACAGGGGCGTGCTGCTCTACAAATAGGAGGACACAATGAAGTCGACATC
GAAGCAGC
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protein sequence of jgi.p|Trimin1|351571

>Trimin1|351571|estExt_Genemark1.C_Ctg_940016 ID=Trimin1|351571|estExt_Genemark1.C_Ctg_940016|Name=jgi.p|Trimin1|351571|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=257bp
MGRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASI
KAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGIYRTAVAA
EVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVT
AFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGLGD
FPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGG
FSLKGP*
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mRNA from alignment at Contig_94:87932..91260-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7927 ID=mRNA_7927|Name=jgi.p|Trimin1|351571|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3329bp|location=Sequence derived from alignment at Contig_94:87932..91260- (Tribonema minus UTEX_B_3156 )
GCAGCACTCTCAGATCAGCAGACCCTCGAAGATGGGCAGGGTGAGCAAGC TTGGCGGCAGTCCTGATGATAACACTGGCATTGCGTGCCGGCAGGCTGAA CAGGATCATGCGTGAAAAGATCCTCACAGCACTGTCTCTGCCTGCTGCCT GCTTCGCACACAGTTTACCGACAAGGTGGCGATTGTAACAGGCGCCAGCA GCGGCATTGGCCTTGCAACAGCACAGCAAATGGCTGCTGAGGGTGCCAAG GTCGTGCTGGCAGCGAGGGGCCAAGAGAAATTGGACAAGGCAGTCGCCAG CATCAAGGCAAGTGCTGTTTCTGCTGCTGCTACATGGTTGAAGCTTGAGA CTTTGTCTCACAGAGTACACTTGACAAACAAGGAAGTTGTAAATAAACCT CGTGCAGTTCTGTTGCACTCATCATGAATTCAGGCTGCTGGCGGCGAGGC CATCGGCGTGACCATGGACGCGTCCGTCGACGAGGACAACAAGCGCTTGG TTGACAAGGCACTGGAGACCTACGGTGCTGTTAACGTCAGCTTCATCAAC GCTGGCATCTACAGAACCGCTGTGGCTGCAGAGGTGAGAGCATGCCCAGA CACATGCTTGTTTGGTCACACTCATTTTCTTCAAAGGACATGCTCGTTTC ATGTGTTCAATGATTGGTCATGTATGTTCTTCTTGTAGGTGCATAGCATG GCACCATTTGATTTTCTAAGTGCACAGCATGGTACCATTACTCTACTGTT GCATTCATTTAGTGATATTCAGCAGCAAGGCATCATTCGTGCGCACACCA TAGTCACTGCACTTGCTGGCCAGGACTGACATCTACGGAAAAGTCGTCCC ACGATTATGCGTCCCACGATTACATGACGGCAACCTGGGTGCGCAAATAC AGCATAGCTGATTACATTCAAGTCATGACTCATCAGTCCTCTGCGGCATA TCAAGTTGACACTGTGAACCTGTACATGGCTGAGGAGCAGCAACCCAGCT GAGTACCTTGAAGTAGATGAATAGAATTGTTTGTTTACAAAAGAAGTACT TCTGACATGCTTCGCAGCATGTGCATCACGGGTTGATATTTGTTGAGCAG CATACAAGTCCGGCTGCTTGACATGCACTTATGTGTTCATACGCAACGCA CACTGAGCCCTGGGAACCTGAGAATCCCTTCAATCCGCTTGCACTCAGGC ATACTGCATGTCACAGCAAGCCAGCAAAGCAATTAGCCTACGCAATGACA TTAAGTGTTGTTGCTGTGCTTTGAGGTACCTGCCTGCCTATATCAGTAGA CATTATGCGCATACCGTGCCGACGCAGCTTTCTGCACGCATTCAGGTACT TTCCGATGCCCATGCCCATGTTGTGCACCAAGTATTATACGGCATGCACT GTTCATACCATGGTTACCGAATGACTGAAGGTATACATGATGCACGTTGG TCCGTAAACGGGCAGTCTCAGCTTCAAGTGCTCCCGTCCGTAATCACATG TGTTGTACCACATGTACTTCCTGTAAATGTTACATGATATTTTGCACCAT GCAGCACTCAGCCGCACAAGGCATAACCGCGTGTGTGGTCCGAACCGAGC GCACGCGGCGCATCCTAACCCTAGTTGATGTCACCTAACCTTAGATATAC CCCTTAGTTGATGGCATCTAGTTCATAAAACGTATGAAACCGCATGTATA TCATACTGATTGTGGCACTGCACTGTTTGACTCGGGGCCAATTGCCGCAG CAGCGGCGACCACGGTTATTGATGGAAGGCATTTTGCGGCTAACCACACC TTACCACCTGGAGCCCTACGATCTTTTGATTGATGCTTTAGGCTTCATGC CGAACCCTGAGTACAACACCTGACCCAGTTCAGTAATGCGTCCTCCTGCT GCAGGTCACCAAGACGATTCTTGATGAGCTTTACGACACCAATGTCAAGG GCGTGGCATACGCCCTCAAGTACCAGCTTGCTGCCATTGAGAAATCTGGC GGCAAGGGGTCTGTGGTCATCAACAGCAGCTGCGCGGGTGGCAACGTAAC TGCCTTCCCGGTGTTCAGGTCCAATGGCCCCTACGCATCCACCAAAGCGG CTGCCGACATCCTGATGAAGTACGCGGTGAGTACTTGAACTTCAACAGTG CCTTGCTACAACAGTGCTTGTGTGCAGATGGCCACGGCCCTTGAGTCAGC TCAAAATCACATGGTTGTCCTCATCAGTAGTGCTTGTTGTGCTCACTCAG CTGTGCATGTTCCACCTGATGACCTATTGGTATAGGCCCCGTCTAGGGTG GGGTACCCAGTGATTGCACCAATGATTGGTGCTCATTCTCTTCATGCTTG TGCTGATCGGGATAGCACTTGTATTGTGCAAGAAATACATGTTCATGAGT ACTTTGTTGTTACTTTCTACACCTGATTTTGTCAACATGCCATACATGCC ACACCATAAATATCGCCCATGCTCTAGTGCAATTGGTGCTGAGCACCCCC AATGAGCTAAGCGCATCTTTTACCTCTCCTGCATGCCATAGCGCTACCGC AACCATCAAGCTGTGAGCATATACACACTGCACGTGCTCTGACCACTGTT GATCTGACTCTTACTCGCGCACGCTGTGGACCCCCCCCCCCCCCCAACAC CCCCCACCACCCCATGTGACACTACAGGCGATCGAGGCCATTGACCACGG CACGCGCGTCAACAGCATTGCCCCCGGCGTGGTCGCCACCGGCCTCGGCG ACTTTCCCGAGGACGCCTTCGACGAGATGGGCAAGACAGTGCACCTCATG CCGCGCGCGGGGCGCCCCGAAGAGATTGCGCGCTGCGTGTGCTTCCTCGC CAGCGACGACGCGTCCTTCGTCACGGGCACCGTGCTTTACGCGGACGGCG GTTTCAGCCTCAAGGGGCCCTGAACTGTCGCCGCGCCCCTGCCGCGTGTG CGGGTGGTACGCTGCCTGGCCTTGCGCAACGGCGCGAGCCTTCTGTGCGT CAAGGCGCTGATGCGCTATTTACGCCCCTGGTAGCGGTGAAGTACGCGTG TCAGTGATTTATTTTGCTTGAGGCCGCAGCCTTCAGAATCTGTCAAGTAC CGGCTAGAGCAGCTGCGCAGCGCTTGCGAGTGACTGGAGAAGCAGGCAGC TAGTGTTGTGGTACTGTCAAGGTTTGTGCAGCATGGGTTTGTACTGGGGA TTATGGGTTTGATTTACAATCCCTTGCCCTCACTGTGAGGGCTTGTCAGT GGTAAGGGGCGTGCAAGGTTTAACAGGGGCGTGCTGCTCTACAAATAGGA GGACACAATGAAGTCGACATCGAAGCAGC
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Coding sequence (CDS) from alignment at Contig_94:87932..91260-

>mRNA_7927 ID=mRNA_7927|Name=jgi.p|Trimin1|351571|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=771bp|location=Sequence derived from alignment at Contig_94:87932..91260- (Tribonema minus UTEX_B_3156 )
ATGGGCAGGTTTACCGACAAGGTGGCGATTGTAACAGGCGCCAGCAGCGG
CATTGGCCTTGCAACAGCACAGCAAATGGCTGCTGAGGGTGCCAAGGTCG
TGCTGGCAGCGAGGGGCCAAGAGAAATTGGACAAGGCAGTCGCCAGCATC
AAGGCTGCTGGCGGCGAGGCCATCGGCGTGACCATGGACGCGTCCGTCGA
CGAGGACAACAAGCGCTTGGTTGACAAGGCACTGGAGACCTACGGTGCTG
TTAACGTCAGCTTCATCAACGCTGGCATCTACAGAACCGCTGTGGCTGCA
GAGGTCACCAAGACGATTCTTGATGAGCTTTACGACACCAATGTCAAGGG
CGTGGCATACGCCCTCAAGTACCAGCTTGCTGCCATTGAGAAATCTGGCG
GCAAGGGGTCTGTGGTCATCAACAGCAGCTGCGCGGGTGGCAACGTAACT
GCCTTCCCGGTGTTCAGGTCCAATGGCCCCTACGCATCCACCAAAGCGGC
TGCCGACATCCTGATGAAGTACGCGGCGATCGAGGCCATTGACCACGGCA
CGCGCGTCAACAGCATTGCCCCCGGCGTGGTCGCCACCGGCCTCGGCGAC
TTTCCCGAGGACGCCTTCGACGAGATGGGCAAGACAGTGCACCTCATGCC
GCGCGCGGGGCGCCCCGAAGAGATTGCGCGCTGCGTGTGCTTCCTCGCCA
GCGACGACGCGTCCTTCGTCACGGGCACCGTGCTTTACGCGGACGGCGGT
TTCAGCCTCAAGGGGCCCTGA
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