mRNA_7921 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A836C7R2_9STRA (RPAP3_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R2_9STRA) HSP 1 Score: 384 bits (985), Expect = 1.090e-134 Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 Query: 1 MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGVDK 585 MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGVDK Sbjct: 1 MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGVDK 195
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI) HSP 1 Score: 105 bits (263), Expect = 7.050e-25 Identity = 63/178 (35.39%), Postives = 92/178 (51.69%), Query Frame = 1 Query: 91 TASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVL--------SRCAAADSALPPCQPRNSSSDDGDA-------ANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGV 579 TA S + GPL+AP ++F+RDWRRRC T+ + L L+G + LF+VE++P +LGQ+L V+ R A A P + R+ + GDA ANG + C+ WL + TGRFA+N+ FL+D+E L D + + + EE+ LRK Y V Sbjct: 43 TAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFPLHPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKAGARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDEEISSLRKAYAV 220
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE) HSP 1 Score: 103 bits (257), Expect = 2.190e-23 Identity = 62/169 (36.69%), Postives = 88/169 (52.07%), Query Frame = 1 Query: 118 GPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVL--------SRCAAADSALPPCQPRNSSSDDGDAA-------NGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYGV 579 GPL+AP ++F+RDWRRRC+T+ + L LVG LF+VE++P +LGQ++ V+ R AA A + R+ + GDAA NG+ + C+ WLR + TGRFA+N+ FL+D E AL D + EE+ LRK Y V Sbjct: 122 GPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFPFQPQRIDAATPATQENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVF---GDEEISSLRKAYAV 287
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A7S2REI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REI2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.840e-12 Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 1 MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKL------VRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLS 474 +ESL ++KGW ++P P +AGA + +K + + P+Q P ++ EFERDW+R C++H D V L L +P LF ++D L+ + V+S CA SA S +D D + G +A L + TGRF LN FLS Sbjct: 101 IESLSQKKKGW----ARPAPASQAGARPSRRRGNKARGAAVPISQFPVQPPPSRMEFERDWKRHCRSHDDRVRYLMLCTPDSLPGLFHADMDVTLMSE---VISACAHFASAA------GSEADPSDLSRGDFV---------LATLNALANTGRFTLNKSFLS 242
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A7S1X9I0_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X9I0_9CHLO) HSP 1 Score: 62.0 bits (149), Expect = 3.250e-8 Identity = 45/162 (27.78%), Postives = 73/162 (45.06%), Query Frame = 1 Query: 121 PLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEM---VDALMPLAEAQQ-------AEELRELRKVYG 576 P AP T +F+R+WRR CKT D L L G + + +FKVE+ LLG +L V+ D+A + +G A A ++ L + GRFAL + L + ++ ++ + + + AEAQ +E + +L+ YG Sbjct: 97 PTAAPATSGDFQREWRRSCKTEEDKYKYLRLCGPATLRAIFKVEVGADLLGDMLQVI------DAAWLTFASFAEDTSEGSAL--------AEAAFVVSVLMALSDAGRFALTIRLLGAKAKESMRQLFHNISSAVAAAEAQDGSDALLSSENVEKLKGTYG 244
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: UPI001865067B (coiled-coil domain-containing protein 103 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001865067B) HSP 1 Score: 61.2 bits (147), Expect = 6.710e-8 Identity = 51/148 (34.46%), Postives = 64/148 (43.24%), Query Frame = 1 Query: 133 PTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRE--------TAALGEMVDALMPLAEAQQAEEL 552 P T +EF RDWRR + D LL +G G+ ++F E+ LLG+ L VLS C QP GD V +A L G+ TGRF LNV FLS E LG + D + PL +Q EL Sbjct: 98 PRTAAEFSRDWRRFGGSAPDRYRLLISLGGEGLRRIFSAEIGFGLLGEFLSVLSECL---------QP-------GD------------VTAVVAVLEGMSQTGRFGLNVSFLSQEEWNRCLQLFRRLLGIVGDGI-PLTTDEQCTEL 216
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A061SGS5_9CHLO (Coiled-coil domain-containing protein 103 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SGS5_9CHLO) HSP 1 Score: 56.6 bits (135), Expect = 1.570e-6 Identity = 55/189 (29.10%), Postives = 77/189 (40.74%), Query Frame = 1 Query: 100 SKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGV-----LSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMV---DALMPLAEAQQ---------------------AEELRELRKVYGV 579 S L P + P++ +FER+WRR CK+ + L L G + LFKVE+ +L IL L+ AAAD + A G + VAR L I +GRF+L V + A G ++ +A + AEAQ+ AE L LRK+Y V Sbjct: 24 SALCSSAPREKPSSAGDFEREWRRNCKSANEKYGYLRLCGPELLKALFKVEVSAGVLSGILQAVDEAWLTFAAAAD----------------EGAGGSALEEADFVARA---LESIAASGRFSLTVRLVGADGKRAAGRILGNLEAAVAAAEAQRGGGLEDEQGAAPPPRSGASLTAENLSSLRKLYNV 193
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: A0A7S0N1U1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1U1_9CHLO) HSP 1 Score: 57.0 bits (136), Expect = 1.950e-6 Identity = 40/148 (27.03%), Postives = 59/148 (39.86%), Query Frame = 1 Query: 82 ADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCA---AADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDAL 516 AD ++ L P Q P + +FER+W+R C T D V P++FKVE+ P +L I+ V++ A D A C E + L + G GRF+L L+ + AL + D L Sbjct: 91 ADMVNAAALTTSAPQQLPKSSQDFEREWKRNCPTSVDKYKYFLFVPPDLFPQIFKVEITPTMLTDIIVVVNENALQKTGDDAQDCCTS-------------------EEMLHIARALSALTGVGRFSLTSRLLAPKAKQALSAIFDRL 219
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: UPI0015AC62A1 (coiled-coil domain-containing protein 103 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AC62A1) HSP 1 Score: 55.5 bits (132), Expect = 7.160e-6 Identity = 43/131 (32.82%), Postives = 55/131 (41.98%), Query Frame = 1 Query: 133 PTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPL 525 P T +EF RDWRR + D LL +G G+ +LF E+ LLG+ L VL C L P +A L G+ TGRF LNV FLS E A ++ LM + Sbjct: 98 PRTAAEFSRDWRRFEGSAEDRYQLLVSLGGEGVGRLFSAEVGCGLLGEFLLVLWGC------LRPAD----------------------AGAILAVLEGMSRTGRFGLNVSFLSRAERDACLRLMGKLMEI 200
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Match: C1E2V3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E2V3_MICCC) HSP 1 Score: 53.5 bits (127), Expect = 3.370e-5 Identity = 46/155 (29.68%), Postives = 73/155 (47.10%), Query Frame = 1 Query: 124 LQAPTTQSEFERDWRRRCKTHADMVALLGLVGASG---MPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGGESVA-RCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKVYG 576 ++AP++ +EFE+ WRR CK+ LGLV + + KLF+VE++ +L +++ L+ A D S DD + A A G ++ R A+L + GRFAL + A+ + DAL+ A A L+ YG Sbjct: 105 IRAPSSAAEFEKTWRRSCKSTDARWRYLGLVAGTREGRIAKLFRVEINGTVLSELVAALAAGYAGDG--------RSIRDDDEWAG---ARGARAIGERVRAFLAELATCGRFALAAKLMGSGAREAMRTLADALVANG-AVDAGAAEALKSAYG 247 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|172531 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7921 ID=mRNA_7921|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_94:68420..69007- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGAGAGCCTGGGACATCAGCAGAAGGGCTGGCGAAAAACTGCCTCTAAback to top protein sequence of jgi.p|Trimin1|172531 >Trimin1|172531|e_gw1.94.50.1 ID=Trimin1|172531|e_gw1.94.50.1|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=196bp MESLGHQQKGWRKTASKPPPKHKAGAAADKTASSKLVRKGPLQAPTTQSEback to top mRNA from alignment at Contig_94:68420..69007- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7921 ID=mRNA_7921|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=588bp|location=Sequence derived from alignment at Contig_94:68420..69007- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_94:68420..69007- >mRNA_7921 ID=mRNA_7921|Name=jgi.p|Trimin1|172531|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=588bp|location=Sequence derived from alignment at Contig_94:68420..69007- (Tribonema minus UTEX_B_3156 )back to top |