mRNA_7915 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150074
Unique NamemRNA_7915
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A835YIJ7_9STRA (SufE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIJ7_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.110e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ
Sbjct:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 92          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A6H5J9B2_9PHAE (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.730e-16
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   76 VRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            V + GT+DARL+RG+LALL  GL+G+SA  VL L GK +AAA+G +AGLT SRINGLGN+L V+Q Q
Sbjct:  187 VSIRGTADARLSRGLLALLALGLQGQSARTVLSLRGKDLAAAVGMRAGLTSSRINGLGNVLGVIQDQ 253          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A4P5VNB0_9CYAN (SufE domain-containing protein n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VNB0_9CYAN)

HSP 1 Score: 68.2 bits (165), Expect = 2.550e-12
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KVRGC ++V V  DL          +   G SDA++T+G+LALL+EGLEG +   V+ +D   IAA  G QA LT SR NG  NIL  +QAQ
Sbjct:   49 KVRGCVSQVYVVGDLVEGK------LHWQGDSDAQITKGLLALLIEGLEGLTPQQVVAIDPAFIAAT-GLQASLTPSRANGFLNILRAMQAQ 133          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A354AZF6_9CYAN (Cysteine desulfuration protein SufE n=1 Tax=Synechococcales bacterium UBA10510 TaxID=2055795 RepID=A0A354AZF6_9CYAN)

HSP 1 Score: 67.8 bits (164), Expect = 3.250e-12
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KV+GC + V V   L++    G L  R  G +DA +T+G+LALL+EGLEG S + V+ +D   IAA  G QA LT SR NG  NIL ++QAQ
Sbjct:   70 KVKGCVSNVYVVGQLQQ----GKLHWR--GDADAAITKGLLALLIEGLEGLSPERVIAIDPSFIAAT-GLQASLTPSRANGFLNILKLMQAQ 154          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: UPI00135C3F35 (SufE family protein n=1 Tax=Cyanobium sp. Copco_Reservoir_LC18 TaxID=1328305 RepID=UPI00135C3F35)

HSP 1 Score: 67.0 bits (162), Expect = 4.940e-12
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KV+GC ++V V   L         T+   G SDA++T+G+LALL+EG+EG +A+ V  +D   +AA  G QA LT SR NG  NI   +QAQ
Sbjct:   48 KVKGCVSQVYVVGQLANG------TLHWQGDSDAQITKGLLALLIEGMEGLTAEQVTAIDPSFLAAT-GLQASLTPSRANGFLNIFRTMQAQ 132          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A4P5VDG1_9CYAN (Cysteine desufuration protein SufE n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VDG1_9CYAN)

HSP 1 Score: 65.9 bits (159), Expect = 1.250e-11
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KV+GC ++V V   L+        T+   G SDA +T+G+LALL+EGLEG +      LD  ++AA  G QA LT SR NG  NIL  +QAQ
Sbjct:   48 KVKGCVSQVYVVGTLQDG------TLHWRGDSDAAITKGLLALLIEGLEGLTPQQAAALDPAILAAT-GLQASLTPSRANGFLNILRAMQAQ 132          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A5J6Q296_9SYNE (SufE family protein n=1 Tax=Synechococcus sp. RSCCF101 TaxID=2511069 RepID=A0A5J6Q296_9SYNE)

HSP 1 Score: 65.5 bits (158), Expect = 1.960e-11
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KVRGC ++V V   L    + GLL  R  G SDA++T+G+LALL+EGL G   D V ++D   IA   G QA LT SR NG  NI  ++Q+Q
Sbjct:   49 KVRGCVSQVYVVGHL----EEGLL--RWQGESDAQITKGLLALLIEGLSGLRPDQVAEMDPGFIAET-GLQASLTPSRANGFLNIFRMMQSQ 133          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A368CIM7_9SYNE (SufE family protein n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A368CIM7_9SYNE)

HSP 1 Score: 65.1 bits (157), Expect = 2.380e-11
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            +VRGC ++V VA  L          +R  G SDA++T+G+LALL++GL+G S   V+ +D   IA   G QA LT SR NG  NIL  +QAQ
Sbjct:   48 RVRGCVSQVFVAPTLENGQ------LRWQGDSDAQITKGLLALLIQGLDGLSPQQVVAMDPAFIAET-GLQASLTPSRANGFLNILRHMQAQ 132          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A6N2EJJ7_9CYAN (SufE family protein n=1 Tax=Cyanobium sp. PLM2.Bin73 TaxID=2480217 RepID=A0A6N2EJJ7_9CYAN)

HSP 1 Score: 65.1 bits (157), Expect = 2.590e-11
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KV+GC ++V V  +L+        T+   G SDA +T+G+LALL+EGLEG + +    +D   IAA  G QA LT SR NG  NIL ++Q Q
Sbjct:   54 KVKGCVSQVYVVGELQNG------TLHWRGDSDAAITKGLLALLIEGLEGLTPEQASTIDPGFIAAT-GLQASLTPSRANGFLNILRMMQGQ 138          
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A2P7N1D9_9CYAN (Cysteine desulfuration protein SufE n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2P7N1D9_9CYAN)

HSP 1 Score: 64.3 bits (155), Expect = 5.050e-11
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
            KV+GC ++V V  +L   D A    +   G SDA +T+G+LALL+EGLEG +      +D   IAA  G QA LT SR NG  NIL ++QAQ
Sbjct:   51 KVKGCVSQVFVVAEL--VDGA----LHWHGDSDAAITKGLLALLIEGLEGLTPQQATAIDPAFIAAT-GLQASLTPSRANGFLNILRLMQAQ 135          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIJ7_9STRA2.110e-53100.00SufE domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5J9B2_9PHAE1.730e-1664.18tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A4P5VNB0_9CYAN2.550e-1247.83SufE domain-containing protein n=1 Tax=Cyanobium s... [more]
A0A354AZF6_9CYAN3.250e-1248.91Cysteine desulfuration protein SufE n=1 Tax=Synech... [more]
UPI00135C3F354.940e-1244.57SufE family protein n=1 Tax=Cyanobium sp. Copco_Re... [more]
A0A4P5VDG1_9CYAN1.250e-1145.65Cysteine desufuration protein SufE n=1 Tax=Cyanobi... [more]
A0A5J6Q296_9SYNE1.960e-1147.83SufE family protein n=1 Tax=Synechococcus sp. RSCC... [more]
A0A368CIM7_9SYNE2.380e-1145.65SufE family protein n=2 Tax=unclassified Synechoco... [more]
A0A6N2EJJ7_9CYAN2.590e-1144.57SufE family protein n=1 Tax=Cyanobium sp. PLM2.Bin... [more]
A0A2P7N1D9_9CYAN5.050e-1146.74Cysteine desulfuration protein SufE n=3 Tax=Cyanob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_94contigContig_94:43304..43579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150074|gw1.94.116.1
BRITEko00000
KEGG koko:K02426
Preferred namesufE
DescriptionSufE protein probably involved in Fe-S center assembly
COG categoryS
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG2166@1|root,COG2166@2|Bacteria,1G5RX@1117|Cyanobacteria,1H0XN@1129|Synechococcus
Evalue7.75e-13
Seed ortholog110663.KI911558_gene258
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRossmann-like alpha/beta/alpha sandwich fold
Ec32 orthologEc-26_004980.1
TranscriptId150396
TrackFilteredModels1
ProteinId150074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150074gene_7915Tribonema minus UTEX_B_3156 geneContig_94 43304..43579 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7915_1exon_7915_1Tribonema minus UTEX_B_3156 exonContig_94 43304..43579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7915CDS_7915Tribonema minus UTEX_B_3156 CDSContig_94 43304..43579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150074Trimin1|150074|gw1.94.116.1Tribonema minus UTEX_B_3156 polypeptideContig_94 43304..43579 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7915 ID=mRNA_7915|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_94:43304..43579- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGTCCGAGGCTGCACAGCCGAGGTGCGTGTTGCCGTAGACCTACGGCG
AGCTGACGACGCCGGCTTACTAACAGTACGTCTCGGCGGTACCAGTGATG
CACGGCTGACGCGAGGCATTCTGGCGCTGCTAGTGGAGGGACTAGAAGGC
GAAAGCGCTGATGCTGTCCTACAGCTGGATGGCAAAGTTATTGCAGCAGC
GATCGGCAGCCAAGCGGGGCTGACAGAGAGCAGGATCAACGGCCTAGGCA
ACATCCTGTCTGTCGTCCAGGCTCAG
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protein sequence of jgi.p|Trimin1|150074

>Trimin1|150074|gw1.94.116.1 ID=Trimin1|150074|gw1.94.116.1|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp
KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEG
ESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ
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mRNA from alignment at Contig_94:43304..43579-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7915 ID=mRNA_7915|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_94:43304..43579- (Tribonema minus UTEX_B_3156 )
AAGGTCCGAGGCTGCACAGCCGAGGTGCGTGTTGCCGTAGACCTACGGCG AGCTGACGACGCCGGCTTACTAACAGTACGTCTCGGCGGTACCAGTGATG CACGGCTGACGCGAGGCATTCTGGCGCTGCTAGTGGAGGGACTAGAAGGC GAAAGCGCTGATGCTGTCCTACAGCTGGATGGCAAAGTTATTGCAGCAGC GATCGGCAGCCAAGCGGGGCTGACAGAGAGCAGGATCAACGGCCTAGGCA ACATCCTGTCTGTCGTCCAGGCTCAG
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Coding sequence (CDS) from alignment at Contig_94:43304..43579-

>mRNA_7915 ID=mRNA_7915|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_94:43304..43579- (Tribonema minus UTEX_B_3156 )
AAGGTCCGAGGCTGCACAGCCGAGGTGCGTGTTGCCGTAGACCTACGGCG
AGCTGACGACGCCGGCTTACTAACAGTACGTCTCGGCGGTACCAGTGATG
CACGGCTGACGCGAGGCATTCTGGCGCTGCTAGTGGAGGGACTAGAAGGC
GAAAGCGCTGATGCTGTCCTACAGCTGGATGGCAAAGTTATTGCAGCAGC
GATCGGCAGCCAAGCGGGGCTGACAGAGAGCAGGATCAACGGCCTAGGCA
ACATCCTGTCTGTCGTCCAGGCTCAG
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