mRNA_7915 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A835YIJ7_9STRA (SufE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIJ7_9STRA) HSP 1 Score: 170 bits (430), Expect = 2.110e-53 Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ
Sbjct: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 92
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A6H5J9B2_9PHAE (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B2_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.730e-16 Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1
Query: 76 VRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
V + GT+DARL+RG+LALL GL+G+SA VL L GK +AAA+G +AGLT SRINGLGN+L V+Q Q
Sbjct: 187 VSIRGTADARLSRGLLALLALGLQGQSARTVLSLRGKDLAAAVGMRAGLTSSRINGLGNVLGVIQDQ 253
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A4P5VNB0_9CYAN (SufE domain-containing protein n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VNB0_9CYAN) HSP 1 Score: 68.2 bits (165), Expect = 2.550e-12 Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KVRGC ++V V DL + G SDA++T+G+LALL+EGLEG + V+ +D IAA G QA LT SR NG NIL +QAQ
Sbjct: 49 KVRGCVSQVYVVGDLVEGK------LHWQGDSDAQITKGLLALLIEGLEGLTPQQVVAIDPAFIAAT-GLQASLTPSRANGFLNILRAMQAQ 133
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A354AZF6_9CYAN (Cysteine desulfuration protein SufE n=1 Tax=Synechococcales bacterium UBA10510 TaxID=2055795 RepID=A0A354AZF6_9CYAN) HSP 1 Score: 67.8 bits (164), Expect = 3.250e-12 Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KV+GC + V V L++ G L R G +DA +T+G+LALL+EGLEG S + V+ +D IAA G QA LT SR NG NIL ++QAQ
Sbjct: 70 KVKGCVSNVYVVGQLQQ----GKLHWR--GDADAAITKGLLALLIEGLEGLSPERVIAIDPSFIAAT-GLQASLTPSRANGFLNILKLMQAQ 154
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: UPI00135C3F35 (SufE family protein n=1 Tax=Cyanobium sp. Copco_Reservoir_LC18 TaxID=1328305 RepID=UPI00135C3F35) HSP 1 Score: 67.0 bits (162), Expect = 4.940e-12 Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KV+GC ++V V L T+ G SDA++T+G+LALL+EG+EG +A+ V +D +AA G QA LT SR NG NI +QAQ
Sbjct: 48 KVKGCVSQVYVVGQLANG------TLHWQGDSDAQITKGLLALLIEGMEGLTAEQVTAIDPSFLAAT-GLQASLTPSRANGFLNIFRTMQAQ 132
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A4P5VDG1_9CYAN (Cysteine desufuration protein SufE n=1 Tax=Cyanobium sp. TaxID=2164130 RepID=A0A4P5VDG1_9CYAN) HSP 1 Score: 65.9 bits (159), Expect = 1.250e-11 Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KV+GC ++V V L+ T+ G SDA +T+G+LALL+EGLEG + LD ++AA G QA LT SR NG NIL +QAQ
Sbjct: 48 KVKGCVSQVYVVGTLQDG------TLHWRGDSDAAITKGLLALLIEGLEGLTPQQAAALDPAILAAT-GLQASLTPSRANGFLNILRAMQAQ 132
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A5J6Q296_9SYNE (SufE family protein n=1 Tax=Synechococcus sp. RSCCF101 TaxID=2511069 RepID=A0A5J6Q296_9SYNE) HSP 1 Score: 65.5 bits (158), Expect = 1.960e-11 Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KVRGC ++V V L + GLL R G SDA++T+G+LALL+EGL G D V ++D IA G QA LT SR NG NI ++Q+Q
Sbjct: 49 KVRGCVSQVYVVGHL----EEGLL--RWQGESDAQITKGLLALLIEGLSGLRPDQVAEMDPGFIAET-GLQASLTPSRANGFLNIFRMMQSQ 133
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A368CIM7_9SYNE (SufE family protein n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A368CIM7_9SYNE) HSP 1 Score: 65.1 bits (157), Expect = 2.380e-11 Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
+VRGC ++V VA L +R G SDA++T+G+LALL++GL+G S V+ +D IA G QA LT SR NG NIL +QAQ
Sbjct: 48 RVRGCVSQVFVAPTLENGQ------LRWQGDSDAQITKGLLALLIQGLDGLSPQQVVAMDPAFIAET-GLQASLTPSRANGFLNILRHMQAQ 132
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A6N2EJJ7_9CYAN (SufE family protein n=1 Tax=Cyanobium sp. PLM2.Bin73 TaxID=2480217 RepID=A0A6N2EJJ7_9CYAN) HSP 1 Score: 65.1 bits (157), Expect = 2.590e-11 Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KV+GC ++V V +L+ T+ G SDA +T+G+LALL+EGLEG + + +D IAA G QA LT SR NG NIL ++Q Q
Sbjct: 54 KVKGCVSQVYVVGELQNG------TLHWRGDSDAAITKGLLALLIEGLEGLTPEQASTIDPGFIAAT-GLQASLTPSRANGFLNILRMMQGQ 138
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Match: A0A2P7N1D9_9CYAN (Cysteine desulfuration protein SufE n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A2P7N1D9_9CYAN) HSP 1 Score: 64.3 bits (155), Expect = 5.050e-11 Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGESADAVLQLDGKVIAAAIGSQAGLTESRINGLGNILSVVQAQ 276
KV+GC ++V V +L D A + G SDA +T+G+LALL+EGLEG + +D IAA G QA LT SR NG NIL ++QAQ
Sbjct: 51 KVKGCVSQVFVVAEL--VDGA----LHWHGDSDAAITKGLLALLIEGLEGLTPQQATAIDPAFIAAT-GLQASLTPSRANGFLNILRLMQAQ 135 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150074 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7915 ID=mRNA_7915|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_94:43304..43579- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AAGGTCCGAGGCTGCACAGCCGAGGTGCGTGTTGCCGTAGACCTACGGCGback to top protein sequence of jgi.p|Trimin1|150074 >Trimin1|150074|gw1.94.116.1 ID=Trimin1|150074|gw1.94.116.1|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=92bp KVRGCTAEVRVAVDLRRADDAGLLTVRLGGTSDARLTRGILALLVEGLEGback to top mRNA from alignment at Contig_94:43304..43579- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7915 ID=mRNA_7915|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=276bp|location=Sequence derived from alignment at Contig_94:43304..43579- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_94:43304..43579- >mRNA_7915 ID=mRNA_7915|Name=jgi.p|Trimin1|150074|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=276bp|location=Sequence derived from alignment at Contig_94:43304..43579- (Tribonema minus UTEX_B_3156 )back to top |