mRNA_7899 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|165400
Unique Name	mRNA_7899
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A836CDI9_9STRA (Squalene monooxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI9_9STRA)

HSP 1 Score: 1224 bits (3168), Expect = 0.000e+0
Identity = 624/624 (100.00%), Postives = 624/624 (100.00%), Query Frame = 1

Query:    1 MYSFLKEWEGALNRMNVFKLALPGLGVFASMTYFFGFFGISFVNSVLGTDNQAEPCELDSDKPNNSSGSNVDEATAAVASGPYARSAPASSAKYTLEQPEVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEEGGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEHLRWDA 1872
            MYSFLKEWEGALNRMNVFKLALPGLGVFASMTYFFGFFGISFVNSVLGTDNQAEPCELDSDKPNNSSGSNVDEATAAVASGPYARSAPASSAKYTLEQPEVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEEGGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEHLRWDA
Sbjct:    1 MYSFLKEWEGALNRMNVFKLALPGLGVFASMTYFFGFFGISFVNSVLGTDNQAEPCELDSDKPNNSSGSNVDEATAAVASGPYARSAPASSAKYTLEQPEVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEEGGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEHLRWDA 624

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: D7G804_ECTSI (Squalene monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G804_ECTSI)

HSP 1 Score: 654 bits (1686), Expect = 1.540e-227
Identity = 375/642 (58.41%), Postives = 449/642 (69.94%), Query Frame = 1

Query:    1 MYSFLKEWEGALNRMNVFKLALPGLGVFASMTYFFGFFGISFVNSVLGTDNQAEPCELDSDKPNNSSGSNVDEATAAVASGPYARSAPASS--AKYTLEQPEVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVI--LPPGVSAARPDGAE--AVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGA-----------PRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVE-EGGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEHLRWD 1869
            MY  ++ W+G+LNRM+ F LA+P +GVFASMTY FGFFGIS ++ V+     + P     D+            +AA A+GP    +P     + Y L++PEV+++GAGTAGAS A  FA QGR+V L+E+    QDRIVGEL+QPGG+RALE LGL ACA E  DSV VDGY +I     G +AA P G     +L+YP+SDP++  + FG GV    AA A G  A           PRGRSFHNC FV RLRE A+AEPNVR+VEGTV+ L+E +GG VVGVRY+  + GEG      R   E+RAPLT+VADGIWSGLR CAN ++P  +S+FVGV+V H   A+PVPH+HCGHVVLA PSPILIYQIS TETRVLVDVAG MPSAA G LSA L E+ A  LP +FR A+LEAVA G  +KSMPNRA+ +S+  +PGA+L+GDALNMRHPLTGGGMTVALKDV LL+ LL G    D AAVA A+A FH  RR HAATIN+LANALY VF+TP   +D  + G    R  LQ ACFDYLSLGG Y+AGP+GLLSGL+P P VL  HFFMVA HGCR HLLP+    P     VYRLL VA  IIMPLLE E ST L+W P RKA+QL+ PWEH RW+
Sbjct:    1 MYRIVRLWDGSLNRMHFFPLAVPFIGVFASMTYLFGFFGISIISGVMDPPFLSSPAPSPKDR------------SAAPAAGPAKHFSPTEEGPSDYGLDKPEVIIVGAGTAGASAAATFARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVVVDGYAIIRSAEAGGAAAAPGGRRDSVMLYYPESDPENRSELFGKGVKPAAAATAKGGEAGRRPCSREGEVPRGRSFHNCRFVQRLREAAQAEPNVRVVEGTVSALLEGDGGEVVGVRYREAAKGEGQEEE-ERVTREVRAPLTVVADGIWSGLRKCANTNRPQKLSTFVGVLVKHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPSAADGGLSAHLREKSAPQLPAMFRPAFLEAVARG-DVKSMPNRAMPASSVHRPGALLLGDALNMRHPLTGGGMTVALKDVELLSELLRGVPFRDAAAVASAAARFHAGRRAHAATINILANALYHVFSTP---EDPASKG---TRVDLQAACFDYLSLGGCYSAGPVGLLSGLSPVPWVLTTHFFMVAFHGCREHLLPVP--TPGGVLRVYRLLHVATKIIMPLLEEEGSTFLAWWPFRKAIQLVLPWEHERWE 620

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A6H5KHT1_9PHAE (Squalene monooxygenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT1_9PHAE)

HSP 1 Score: 653 bits (1684), Expect = 7.680e-225
Identity = 376/643 (58.48%), Postives = 448/643 (69.67%), Query Frame = 1

Query:    1 MYSFLKEWEGALNRMNVFKLALPGLGVFASMTYFFGFFGISFVNSVLGTDNQAEPCELDSDKPNNSSGSNVDEATAAVASGPYARSAPAS--SAKYTLEQPEVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVI--LPPGVSAARPDGA--EAVLHYPDSDPDSLLQQFGAGVTLEQAAAA--GG----------AGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVE-EGGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEHLRWD 1869
            MY  ++ W+G+LNRM+ F LA+P +GVFASMTY FGFFGIS ++ V+     + P     D+            +AA A+G   R +P    S+ Y+L+ PEV+++GAGTAGAS A  FA QGR+V L+E+    QDRIVGEL+QPGG+RALE LGL ACA E  DSV VDGY +I     G +AA  +G     +L+YP+SDP++  + FG GV    AAAA  GG           G PRGRSFHNC FV RLRE A+AEPNVR+VEGTV+ L+E +GG VVGVRY+    GEG      R   E+RAPLT+VADGIWSGLR CAN ++P  +S+FVGV+V H   A+PVPH+HCGHVVLA PSPILIYQIS TETRVLVDVAG MPSAA G LSA L E+ A  LP +FR A+LEAVA G  +KSMPNRA+ +S+  +PGA+L+GDALNMRHPLTGGGMTVALKDV LL+ LL G  L D AAVA A+A FH  RR HAATIN+LANALY VF+TP      G       R  LQ ACFDYLSLGG Y+AGP+GLLSGL+P P  L  HFFMVA HGCR HLLP+    P     VYRLL VA  IIMPLLE E ST L+W P RKA+QL+ PWEH RW+
Sbjct:  163 MYRIVRLWDGSLNRMHFFPLAVPFIGVFASMTYLFGFFGISVISGVMDPPFVSSPAPSSKDR------------SAAPAAGLPKRFSPTEEGSSDYSLDNPEVIIVGAGTAGASAAATFARQGRKVLLVERCMSEQDRIVGELLQPGGLRALERLGLDACAKEGTDSVVVDGYAIIRSAETGGAAAEAEGRLDSVMLYYPESDPENRSELFGKGVKPAAAAAAAKGGEAGRRPCSREGGVPRGRSFHNCRFVQRLREAAQAEPNVRVVEGTVSALLEGDGGEVVGVRYREAVKGEG--QEEERVTREVRAPLTVVADGIWSGLRKCANTNRPQKLSTFVGVLVKHAADAAPVPHKHCGHVVLAHPSPILIYQISSTETRVLVDVAGAMPSAADGGLSAHLREKSAPQLPAMFRPAFLEAVARG-DVKSMPNRAMPASSVHRPGALLLGDALNMRHPLTGGGMTVALKDVELLSELLRGVPLRDAAAVASAAARFHAGRRAHAATINILANALYHVFSTPEGPASKGT------RVDLQAACFDYLSLGGCYSAGPVGLLSGLSPAPWALTTHFFMVAFHGCREHLLPVP--TPGGVLRVYRLLHVATKIIMPLLEQEGSTFLAWWPFRKAIQLVLPWEHERWE 782

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A4D9D9N2_9STRA (Squalene monooxygenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9N2_9STRA)

HSP 1 Score: 439 bits (1129), Expect = 1.020e-142
Identity = 284/603 (47.10%), Postives = 350/603 (58.04%), Query Frame = 1

Query:  301 VVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAV----LHYPDSDPDSLLQQFGAGVTLEQAAAAG---------------------GAGA----------------------------------------------PRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLV-----EEGGAVVGVRYKVRSGGE----GGGYVCARPVHELRAPLTIVADGIWSGLRACANPH-KPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQAR-WLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLG-GADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPL---GFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPW 1851
            +++IGAGTAGA+ A+  A +G +V L E+   LQDRIVGEL+QPGG+RALE LGL  CA E  DSV VDGY V  PP     + +G E V    L YP  DP +L + FG       + AA                      GAG                                               P+GRSFHN  FV RLR  A AEPNV +V G V++L+          V+GV YK+ +G       G  V  + V    APLT+VADG+WS LR   +   KP  +SSFVG+I++HPPMASP+PH HCGHVVLA PSP+L+YQIS TETRVLVD+ G+MPSA+TG L+ +L    +  LPPV +A +  AVA G   KSMPNR++ ++   + G +++GDALNMRHPLTGGGMTVAL+DV  L  LL    DL D AA+      F R R+  AATINVLANAL+AVF+TP      GN      R  L+DACFDYLS+GG  A GPI LLSGLTPRP +LA HFF+VA HG R +L P+   G L        Y +L VAC IIMPLL VE+ST L+  PVR  V L+FP+
Sbjct:   94 IIIIGAGTAGAAAAVGLAERGFKVLLFERDMSLQDRIVGELLQPGGVRALERLGLDECAKEGIDSVHVDGYVVFTPP---QHKKEGGEKVQSILLKYPAYDPATLKELFGVIDPSPSSPAADRPTLSLSPPRFSEKEGGKLVHGAGRAVTPPFPEGTKVTHAPNPPSSPSGHLSMPPSPSFPSAAHQGPTSLHPQGRSFHNGRFVQRLRARALAEPNVTVVNGIVSRLLYAEPDSPTSRVIGVEYKIGTGRRLRTADGEEVEEKEVRRAMAPLTLVADGLWSSLRTHVDKAAKPTQLSSFVGLILSHPPMASPLPHPHCGHVVLADPSPVLLYQISSTETRVLVDIFGRMPSASTGDLAHYLSTHIQPQLPPVLQAPFAAAVARG-EFKSMPNRSMPAANVDRDGVLMVGDALNMRHPLTGGGMTVALRDVEALCYLLETSTDLGDPAAMRVLKGRFARERKAWAATINVLANALHAVFSTPA-----GN----PTRKDLRDACFDYLSVGGYCAGGPINLLSGLTPRPSILALHFFLVAFHGVRKYLWPVPSWGGLG-----RTYEMLQVACEIIMPLLSVEKSTVLAAWPVRALVGLIFPY 678

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A6G0XPP6_9STRA (Squalene monooxygenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPP6_9STRA)

HSP 1 Score: 421 bits (1082), Expect = 2.350e-136
Identity = 252/530 (47.55%), Postives = 326/530 (61.51%), Query Frame = 1

Query:  286 LEQP--EVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLV----EEGGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTA-RSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPW 1851
            +E P  +V+++GAGT G S+AIA A QG++V ++EK+   QDR VGELMQPGG++AL  LGL  CA    D V   GYTVIL         +    +L YPD  P +  +  G            G G   GR FHN  FV RLRE    EPNV +VEGTVT+L+     +     G++Y+ R+  E        PV    APL IV+DG+WSGLR   +   P  ISSFV V++THP M + VP R  GHV+LAQPSPIL+YQISPTETRVLVDV GK+PS+++GAL+  L+   A  +P   RAA++EAV  G  +K+MPNR   ++       I++GD  NMRHPLTGGGMTVALKDV LL+ LL   D+   A +A     F R R  H++T+N+LANALY VF+ P+      +G DV A R  L+++C++YL +GG + AGP+GLL  LTP+P +LA HFFMVA +     L P  F  P R  H YR+   AC IIMPLLE E  T L+W P+   V L+FP+
Sbjct:  125 IENPAADVIIVGAGTTGCSMAIALAKQGKKVFIVEKTMEYQDRFVGELMQPGGLQALRKLGLIECAETETD-VLTKGYTVILD--------EKDNIMLPYPDRVPQNFWEFLGVFRNDN------GTGKQYGRCFHNGGFVQRLRERLMKEPNVTIVEGTVTKLLMADDAKANVCTGIQYRRRAPTED----VEMPVESATAPLVIVSDGLWSGLRRDLSKDSPKQISSFVAVLMTHPKMEATVPCRQFGHVILAQPSPILMYQISPTETRVLVDVPGKVPSSSSGALTEHLISYVAPQIPKESRAAFIEAVKTG-PVKTMPNREFMTTQPSIGRVIMLGDTFNMRHPLTGGGMTVALKDVVLLSELLRDVDVTKSADIAAVRRTFERERVHHSSTVNILANALYHVFSVPL------DGSDVAAARVTLRESCYEYLKMGGMFMAGPLGLLCALTPKPMILALHFFMVAGYAASRCLRP--FPTPARLLHCYRVFHQACIIIMPLLERENVTVLAWAPLCALVNLIFPY 626

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A485KQF9_9STRA (Squalene monooxygenase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQF9_9STRA)

HSP 1 Score: 415 bits (1066), Expect = 5.820e-134
Identity = 250/522 (47.89%), Postives = 327/522 (62.64%), Query Frame = 1

Query:  298 EVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEEGGAVV--GVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGD-VTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPW 1851
            +V++IG GTAGAS+A+  A QGR+V + EK+   QDR VGELMQPGG++AL TLGL  CA    D +   GY V+        + D     L YPD  P + L+  G       + A  G G   GR FHN  FV RLR    AEPNV ++EGTV++L++   A V  GV Y+ ++  +        P  +  APL IV+DG+WSGLR   +  KP LISSFV V++THP M + VP R  GHV+LA+PSPIL+YQIS TETRVLVDV GK+PS ++GAL A L+   A  +P   RAA++EAV  G  +KSMPNR   ++       I++GD+ NMRHPLTGGGMTVALKDV LL  LL  ADL   A VA    AF   R  H++T+N+LANALY +F+ P  +DDDG+       R  L+++CF+YL +GG ++AGP+GLL  LTP+P +LA HFFMVA +     L P  F +P R    +++   AC IIMPLLE E  T L+W P+   + L+FP+
Sbjct:  130 DVIIIGGGTAGASMAVGLAKQGRKVLVFEKTLEYQDRFVGELMQPGGLQALRTLGLLDCAETEND-IMTHGYYVL-------TKDDHIH--LPYPDRVPQTFLEYLGV------SRADNGTGKQYGRGFHNGAFVQRLRARLLAEPNVTVIEGTVSKLLQADKANVCQGVVYRRKAPSDD----VDMPTEQATAPLVIVSDGLWSGLRGALSNDKPKLISSFVAVLMTHPKMEATVPFRQHGHVILAEPSPILMYQISQTETRVLVDVPGKVPSQSSGALEAHLLTHVAPQIPDASRAAFIEAVKTG-PVKSMPNREFMTTQPTMGRVIMLGDSFNMRHPLTGGGMTVALKDVVLLNDLLKDADLTRAADVAAVRRAFELERIHHSSTVNILANALYFIFSVP--ADDDGSDPRRALVRETLRESCFEYLKMGGMFSAGPLGLLCALTPKPFILALHFFMVAGYAGWRCLKP--FPSPSRLVLCFQVFHEACRIIMPLLERENVTILAWPPLCALINLIFPY 626

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: W4HAJ6_9STRA (Squalene monooxygenase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAJ6_9STRA)

HSP 1 Score: 415 bits (1066), Expect = 6.370e-134
Identity = 243/526 (46.20%), Postives = 327/526 (62.17%), Query Frame = 1

Query:  298 EVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEEGGA------VVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPG-AILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPW 1851
            +V+++GAGTAG S+A+  A QGR+V +IEKS   QDR VGELMQPGG+ AL +L L  CA    D V+  GY+++LP             +L YPD  P + L+  G       + A  G G   GR FHN  FV RLR    AEPNV +VEGTV++L+ E  A        G++++ ++  +        PV    APL I +DG+WSGLR   +   P  ISSFV +++THP M + VP R+ GHV+LA PSPIL+YQISPTETRVLVDV GK+PS++ G L+  L+   A  +P   RAA++ AV  G  +KSMPNR   ++     G  +++GD  NMRHPLTGGGM+VALKDV LL  LL   DL+    VA    AF + R  H++T+N+LANALY +F+ P   DDD +   + AR+ L+++C++YL +GG + AGP+GLLS LTP+P VLA HFFMVA +     L P  F  P R  H +++   AC IIMPLLE E  T L+W P+R  + ++FP+
Sbjct:  128 DVIIVGAGTAGCSMAVGLAKQGRKVLVIEKSLEYQDRFVGELMQPGGLEALRSLDLIECAETSTD-VKTLGYSILLP--------HSDHIMLPYPDRAPHTFLEYMGL------SRADNGTGKQHGRGFHNGAFVQRLRARMLAEPNVTVVEGTVSKLLLEQPAKSSTSVCTGIQFRRKALSDD----VEMPVETASAPLVIASDGLWSGLRRDLSTDVPKQISSFVAILMTHPAMEATVPFRNFGHVILAHPSPILMYQISPTETRVLVDVPGKVPSSSNGDLTKHLLTHVAPQIPDASRAAFVRAVETG-PVKSMPNREFMTTQPAHIGRVVMLGDTFNMRHPLTGGGMSVALKDVVLLNNLLKNVDLSSGKDVAAVRRAFEQDRVHHSSTVNILANALYHIFSVPSADDDDKHV--LAARATLRESCYEYLKMGGVFMAGPLGLLSALTPKPFVLATHFFMVAGYAAIRCLAP--FPTPYRLYHCFQVFHQACVIIMPLLERENVTILAWAPLRALINVIFPY 629

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BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A024UQZ3_9STRA (Squalene monooxygenase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQZ3_9STRA)

HSP 1 Score: 410 bits (1054), Expect = 4.600e-132
Identity = 241/529 (45.56%), Postives = 323/529 (61.06%), Query Frame = 1

Query:  298 EVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEE-------GGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPG-AILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEH 1857
            +V+V+GAGTAG S+A+  A QGR+V ++EKS   QDR VGELMQPGG+ AL +L L  CA    D V+  GY+++        RP     +L YP+  P +L++  G   T        G G   GR FHN  FV RLR    AEPN+ +VEGTV++LV E            G++++ +S  +        PV    APL I +DG+WSGLR   +  +P  ISSFV +++THP M + VP R  GHV+LAQPSPIL+YQISPTETRVLVDV GK+PS+  G L+  L+   A  +P   RAA++ AV  G  +KSMPNR   ++     G  +++GD  NMRHPLTGGGM+VALKDV LL  LL   DL+    VA    AF + R  H++T+N+LANALY +F+ P   DD  +   + AR+ L+++C++YL +GG + AGP+GLLS LTP+P VLA HFFMVA       L P  F  P R  H  ++   AC IIMPLLE E  T  +W P+R  + ++FP+ +
Sbjct:  130 DVIVVGAGTAGCSIAMGLAKQGRKVLVVEKSLEYQDRFVGELMQPGGLEALRSLDLIDCAETSMD-VKTLGYSIL--------RPHHDHIMLPYPNCAPKTLIEYMG--FTRND----NGTGKQHGRGFHNGAFVQRLRARILAEPNITVVEGTVSKLVLEPTTKGSQSNVCKGIQFRRKSPSDD----VEMPVETALAPLVIASDGLWSGLRRDLSKDQPKQISSFVALLMTHPAMEATVPFRQFGHVILAQPSPILMYQISPTETRVLVDVPGKVPSSTNGDLTKHLLSHVAPQIPEASRAAFIRAVETG-PVKSMPNREFMTTQPANIGRVVMLGDTFNMRHPLTGGGMSVALKDVVLLNELLKNVDLSSGKEVAAVRRAFEQDRVHHSSTVNILANALYHIFSVPSTDDDVVDKAVLAARATLRESCYEYLKMGGFFMAGPLGLLSALTPKPVVLATHFFMVAGFAASRCLAP--FPTPSRVYHCCQVFHQACIIIMPLLERENVTIFAWAPLRAMINVIFPYRN 636

[Close]

BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A397E4M2_9STRA (Squalene monooxygenase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E4M2_9STRA)

HSP 1 Score: 415 bits (1067), Expect = 9.440e-132
Identity = 243/526 (46.20%), Postives = 327/526 (62.17%), Query Frame = 1

Query:  298 EVVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEEGGA------VVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPG-AILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPW 1851
            +V+++GAGTAG S+A+  A QGR+V +IEKS   QDR VGELMQPGG+ AL +L L  CA    D V+  GY+++LP             +L YPD  P + L+  G       + A  G G   GR FHN  FV RLR    AEPNV +VEGTV++L+ E  A        G++++ ++  +        PV    APL I +DG+WSGLR   +   P  ISSFV +++THP M + VP R+ GHV+LA PSPIL+YQISPTETRVLVDV GK+PS++ G L+  L+   A  +P   RAA++ AV  G  +KSMPNR   ++     G  +++GD  NMRHPLTGGGM+VALKDV LL  LL   DL+    VA    AF + R  H++T+N+LANALY +F+ P   DDD +   + AR+ L+++C++YL +GG + AGP+GLLS LTP+P VLA HFFMVA +     L P  F  P R  H +++   AC IIMPLLE E  T L+W P+R  + ++FP+
Sbjct:  319 DVIIVGAGTAGCSMAVGLAKQGRKVLVIEKSLEYQDRFVGELMQPGGLEALRSLDLIECAETSTD-VKTLGYSILLP--------HSDHIMLPYPDRAPHTFLEYMGL------SRADNGTGKQHGRGFHNGAFVQRLRARMLAEPNVTVVEGTVSKLLLEQPAKSSTSVCTGIQFRRKALSDD----VEMPVETASAPLVIASDGLWSGLRRDLSTDVPKQISSFVAILMTHPAMEATVPFRNFGHVILAHPSPILMYQISPTETRVLVDVPGKVPSSSNGDLTKHLLTHVAPQIPDASRAAFVRAVETG-PVKSMPNREFMTTQPAHIGRVVMLGDTFNMRHPLTGGGMSVALKDVVLLNNLLKNVDLSSGKDVAAVRRAFEQDRVHHSSTVNILANALYHIFSVPSADDDDQHV--LAARATLRESCYEYLKMGGVFMAGPLGLLSALTPKPFVLATHFFMVAGYAAIRCLAP--FPTPYRLYHCFQVFHQACVIIMPLLERENVTVLAWAPLRALINVIFPY 820

[Close]

BLAST of jgi.p|Trimin1|165400 vs. uniprot
Match: A0A1V9ZRK4_9STRA (Squalene monooxygenase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZRK4_9STRA)

HSP 1 Score: 400 bits (1027), Expect = 3.390e-128
Identity = 236/532 (44.36%), Postives = 320/532 (60.15%), Query Frame = 1

Query:  277 KYTLEQPE--VVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRALETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDSLLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMVEGTVTQLVEEGGAVV--GVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGIWSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPILIYQISPTETRVLVDVAGKMPSAATGALSAFLVEQ-ARWLPPVFRAAYLEAVAAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVALLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPVCSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLAAHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERSTPLSWLPVRKAVQLLFPWEH 1857
            KY    P+  V++IG GT G ++A+  A QG++V + EK+   QDR VGELMQPGG+ AL +L L  CA    D ++ DGY ++        +      VL YP+  P + L+  G       + A  G     GR FHN  FV RLR    A  NV  +EGTVT+L+ +    +  GV+Y+ ++  E        PV + +APL IV DG+WSGLR   +  +P  ISSF+ +++ HP M + VP R  GHV+LA+PSPI++YQISPTETRVLVDV GK+PS + G L+  L+E  A  +P    AA+++AV  G  +KSMPNR   ++       I+IGD+ NMRHPLTGGGM+VAL+D  LL+ LLG  D  D  A+A+A   F   R  H++TIN+LANALY VF  P     DG   +V AR  L+++C+ YL LGG +++GP+GLL  LTP+P VLA HFFMVA +     L P+    P R  H YR+   AC IIMPLLE E  T L+W P+   + ++FP+  
Sbjct:  117 KYAEPNPDADVIIIGGGTTGCAMAMGLAKQGKKVLVFEKTLEYQDRFVGELMQPGGLDALRSLDLLDCAETETD-IKADGYYIL-----KTKKGSEDHVVLPYPERIPKTFLEYLG------YSRAPNGTAKQYGRGFHNGKFVDRLRAKVFAHENVTCIEGTVTKLISDTKTDICRGVQYRRKAPAED----VDMPVEQAKAPLVIVCDGLWSGLRRELSTDQPKQISSFIAILMKHPAMEASVPFRGYGHVILAEPSPIVVYQISPTETRVLVDVPGKVPSQSNGDLTKHLLEVVAPQMPEASHAAFIQAVNEG-PVKSMPNREFMTTQPSLGRCIMIGDSWNMRHPLTGGGMSVALRDAVLLSDLLGKVDFVDADAIAQARHTFEETRVNHSSTINILANALYHVFAIP-----DGYS-NVAAREDLRESCYQYLKLGGMFSSGPLGLLCALTPKPFVLATHFFMVAGYAASRVLGPVP--TPGRLLHCYRVFHEACMIIMPLLERENVTILAWTPLACLINVIFPFRR 623

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|165400 vs. uniprot

BLAST of jgi.p|Trimin1|165400 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CDI9_9STRA	0.000e+0	100.00	Squalene monooxygenase n=1 Tax=Tribonema minus Tax...	[more]
D7G804_ECTSI	1.540e-227	58.41	Squalene monooxygenase n=1 Tax=Ectocarpus siliculo...	[more]
A0A6H5KHT1_9PHAE	7.680e-225	58.48	Squalene monooxygenase n=1 Tax=Ectocarpus sp. CCAP...	[more]
A0A4D9D9N2_9STRA	1.020e-142	47.10	Squalene monooxygenase n=2 Tax=Monodopsidaceae Tax...	[more]
A0A6G0XPP6_9STRA	2.350e-136	47.55	Squalene monooxygenase n=1 Tax=Aphanomyces euteich...	[more]
A0A485KQF9_9STRA	5.820e-134	47.89	Squalene monooxygenase n=1 Tax=Aphanomyces stellat...	[more]
W4HAJ6_9STRA	6.370e-134	46.20	Squalene monooxygenase n=3 Tax=Aphanomyces astaci ...	[more]
A0A024UQZ3_9STRA	4.600e-132	45.56	Squalene monooxygenase n=2 Tax=Aphanomyces invadan...	[more]
A0A397E4M2_9STRA	9.440e-132	46.20	Squalene monooxygenase n=4 Tax=Aphanomyces astaci ...	[more]
A0A1V9ZRK4_9STRA	3.390e-128	44.36	Squalene monooxygenase n=1 Tax=Achlya hypogyna Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_37	contig	Contig_37:955683..960259 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|165400\|e_gw1.37.113.1
BRITE	ko00000,ko00001,ko01000
KEGG rclass	RC00201
KEGG Reaction	R02874
KEGG Pathway	ko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
KEGG ko	ko:K00511
EC	1.14.14.17
GOs	GO:0001101,GO:0003674,GO:0003824,GO:0004497,GO:0004506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006629,GO:0006694,GO:0006950,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009753,GO:0010033,GO:0010035,GO:0012505,GO:0016125,GO:0016126,GO:0016491,GO:0016705,GO:0016709,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901700
Description	squalene monooxygenase activity
COG category	CH
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG0654@1\|root,KOG1298@2759\|Eukaryota
Evalue	2.52e-228
Seed ortholog	2880.D7G804
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	Squalene Monooxygenase (N-terminal region)
Ec32 ortholog	Ec-06_009670.1
TranscriptId	165722
Track	FilteredModels1
ProteinId	165400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165400	gene_7899	Tribonema minus UTEX_B_3156	gene	Contig_37 955683..960259 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|165400	Trimin1\|165400\|e_gw1.37.113.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_37 955683..960259 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_7899_1	exon_7899_1	Tribonema minus UTEX_B_3156	exon	Contig_37 955683..955778 +
exon_7899_2	exon_7899_2	Tribonema minus UTEX_B_3156	exon	Contig_37 956282..956587 +
exon_7899_3	exon_7899_3	Tribonema minus UTEX_B_3156	exon	Contig_37 957202..957648 +
exon_7899_4	exon_7899_4	Tribonema minus UTEX_B_3156	exon	Contig_37 958499..958918 +
exon_7899_5	exon_7899_5	Tribonema minus UTEX_B_3156	exon	Contig_37 959654..960259 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_7899	CDS_7899	Tribonema minus UTEX_B_3156	CDS	Contig_37 955683..955778 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_37:955683..960259+
coding sequence from alignment at Contig_37:955683..960259+

spliced messenger RNA

>mRNA_7899 ID=mRNA_7899|Name=jgi.p|Trimin1|165400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1875bp|location=Sequence derived from alignment at Contig_37:955683..960259+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAGCTTTCTGAAGGAGTGGGAAGGCGCTTTGAATCGCATGAACGT
GTTCAAGCTAGCGCTACCTGGACTGGGCGTGTTTGCCAGCATGACGTACT
TCTTTGGCTTCTTTGGCATCAGCTTTGTCAACAGCGTCCTCGGCACGGAC
AACCAGGCGGAGCCATGTGAACTCGACAGTGACAAACCTAACAACAGCAG
CGGCAGCAATGTCGATGAAGCAACAGCAGCAGTGGCCTCTGGCCCCTATG
CACGAAGTGCCCCCGCTTCGTCCGCCAAATATACGCTGGAGCAGCCGGAG
GTGGTGGTGATAGGGGCGGGAACGGCGGGCGCGAGCCTTGCTATTGCGTT
CGCGTGGCAGGGGCGGCGGGTGACGCTGATTGAGAAGAGCTTCGTGCTGC
AGGACCGCATCGTGGGCGAGCTCATGCAGCCCGGCGGCATGCGCGCGCTG
GAGACCCTCGGCCTCGCCGCCTGCGCGACTGAGCGCTGCGACAGCGTGCG
CGTCGACGGCTACACCGTCATACTGCCCCCCGGCGTCAGCGCCGCGCGCC
CGGACGGCGCTGAGGCAGTGCTCCACTACCCCGACTCAGACCCCGACTCG
CTGCTGCAGCAGTTCGGCGCGGGCGTGACGCTGGAACAGGCGGCGGCGGC
GGGGGGGGCGGGGGCGCCAAGGGGGCGCTCTTTCCACAACTGCAACTTTG
TGGCGCGGCTGCGGGAGGTGGCGCGCGCGGAGCCGAATGTGCGCATGGTG
GAGGGGACGGTGACGCAGCTGGTGGAGGAGGGGGGGGCGGTGGTGGGCGT
GCGCTACAAGGTGAGGAGTGGGGGAGAGGGGGGGGGGTATGTATGCGCAC
GCCCCGTCCATGAGCTGCGCGCCCCCCTCACCATCGTCGCCGACGGCATC
TGGAGCGGCCTGCGTGCGTGCGCCAACCCGCACAAGCCGCTCCTCATCAG
CTCCTTCGTGGGCGTCATCGTGACGCACCCGCCCATGGCGTCGCCCGTCC
CGCACCGCCACTGCGGCCACGTCGTGCTCGCGCAGCCCTCGCCCATCCTC
ATCTACCAGATCAGCCCCACGGAGACGCGTGTGCTGGTGGACGTCGCGGG
AAAGATGCCGAGCGCTGCCACGGGGGCGCTGAGCGCGTTTCTGGTGGAGC
AGGCGCGCTGGCTGCCGCCCGTGTTCCGCGCGGCGTACCTGGAGGCGGTG
GCGGCGGGGGGGAGTATCAAGTCGATGCCGAACCGCGCGCTCGCGTCCAG
CGCCAAGCTCAAGCCCGGGGCCATCCTCATCGGCGACGCCCTCAACATGC
GCCACCCGCTCACGGGCGGCGGCATGACGGTCGCGCTGAAGGACGTGGCG
CTGCTCGCGACGCTGCTCGGCGGCGCCGACCTCGCGGACCGCGCCGCCGT
CGCGCGCGCGTCCGCCGCCTTCCACCGCCGCCGCCGCGGCCACGCCGCCA
CCATCAACGTCCTCGCCAACGCGCTGTACGCTGTCTTCACAACACCTGTC
TGCAGCGACGATGATGGTAATGGCGGCGACGTGACGGCGCGCAGCCACCT
GCAGGACGCGTGCTTCGACTACCTGAGCCTCGGCGGCGCGTACGCGGCGG
GCCCCATAGGCCTGCTCAGCGGGCTCACGCCGCGCCCGGGCGTGCTCGCC
GCGCACTTCTTCATGGTCGCCGCGCATGGCTGCCGCGCGCACCTGCTGCC
GCTGGGGTTTTTGAACCCGCGGCGCTGGCGCCACGTGTACCGTCTGCTGA
GCGTTGCGTGCGGCATCATCATGCCGCTGCTCGAGGTGGAGCGCTCTACG
CCGCTGTCGTGGCTGCCCGTGCGCAAGGCCGTGCAGCTGCTGTTCCCGTG
GGAGCACCTGCGCTGGGACGCGTGA

protein sequence of jgi.p|Trimin1|165400

>Trimin1|165400|e_gw1.37.113.1 ID=Trimin1|165400|e_gw1.37.113.1|Name=jgi.p|Trimin1|165400|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=625bp
MYSFLKEWEGALNRMNVFKLALPGLGVFASMTYFFGFFGISFVNSVLGTD
NQAEPCELDSDKPNNSSGSNVDEATAAVASGPYARSAPASSAKYTLEQPE
VVVIGAGTAGASLAIAFAWQGRRVTLIEKSFVLQDRIVGELMQPGGMRAL
ETLGLAACATERCDSVRVDGYTVILPPGVSAARPDGAEAVLHYPDSDPDS
LLQQFGAGVTLEQAAAAGGAGAPRGRSFHNCNFVARLREVARAEPNVRMV
EGTVTQLVEEGGAVVGVRYKVRSGGEGGGYVCARPVHELRAPLTIVADGI
WSGLRACANPHKPLLISSFVGVIVTHPPMASPVPHRHCGHVVLAQPSPIL
IYQISPTETRVLVDVAGKMPSAATGALSAFLVEQARWLPPVFRAAYLEAV
AAGGSIKSMPNRALASSAKLKPGAILIGDALNMRHPLTGGGMTVALKDVA
LLATLLGGADLADRAAVARASAAFHRRRRGHAATINVLANALYAVFTTPV
CSDDDGNGGDVTARSHLQDACFDYLSLGGAYAAGPIGLLSGLTPRPGVLA
AHFFMVAAHGCRAHLLPLGFLNPRRWRHVYRLLSVACGIIMPLLEVERST
PLSWLPVRKAVQLLFPWEHLRWDA*

mRNA from alignment at Contig_37:955683..960259+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7899 ID=mRNA_7899|Name=jgi.p|Trimin1|165400|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4577bp|location=Sequence derived from alignment at Contig_37:955683..960259+ (Tribonema minus UTEX_B_3156 )
ATGTACAGCTTTCTGAAGGAGTGGGAAGGCGCTTTGAATCGCATGAACGT
GTTCAAGCTAGCGCTACCTGGACTGGGCGTGTTTGCCAGCATGACGGTGA
GCAGATTGCCATCTACACTTGCGCATTTGGGAGGGGTCATCGATCGGCTC
TCCACTCCACCTTCGTCTGAGTATCTCTGAAGATTACGCTCGCTGGCAGG
CAACTTCGATCTGTTGTTCTGCAAGCGGCCTTCCAGACACCACGGTGTGG
CTCCAAGCAATCTATTGAAGACTTGGAGAATAGTGAGCGGGATTTAATTT
ATTTTCCGTCTTTTGCTTGCGATGGCAATTGGACTTTGTGTTGCATCAAC
GTGCAATGCACCAGCCTGCAATCCATAGTGGAAGCGTAATACCATGATAC
GTATGTATGCAGATAGCAAAGTGTGTTCCACTGCCTGATAGGCTGCACCA
CAAGAGCCTTGGTTGTATCCTTTGCATTACTCCCCCGTCTGTGGCCAATG
CCGCACAGTTCTCTCATCAGCAGCACCATCGCCGTGCTCACCAACACCAC
TCGCTCCTGTGCCAACGCGCTCCACTCCCTCGTTCTTGCTGCCCCGCAGT
ACTTCTTTGGCTTCTTTGGCATCAGCTTTGTCAACAGCGTCCTCGGCACG
GACAACCAGGCGGAGCCATGTGAACTCGACAGTGACAAACCTAACAACAG
CAGCGGCAGCAATGTCGATGAAGCAACAGCAGCAGTGGCCTCTGGCCCCT
ATGCACGAAGTGCCCCCGCTTCGTCCGCCAAATATACGCTGGAGCAGCCG
GAGGTGGTGGTGATAGGGGCGGGAACGGCGGGCGCGAGCCTTGCTATTGC
GTTCGCGTGGCAGGGGCGGCGGGTGACGCTGATTGAGAAGAGCTTCGTGC
TGCAGGTGAGCAGCCGTGGTGCCGTGAGTGATGATGCAAGTCTGGTGTGG
CATCATGCGCATGGCATGGTCAGTCGTGCCAGTGCAGAAGCAGGCCTTGG
CTGCGGAGTGCGCCCACCTCACCCTGACCCTAGCAAGCTCCAAGTTGTCA
GCCGGGGGAGACAGCAGGATGTTGCCCGTCCACCGCACAGCAAGACACTT
GGCAGTACCCGAGCACCGAACGCGCTTGACCGACTGGCACTTGCAAGCTC
AGACCGCACAAAAGTACGGTGAAGCCTCCTCGCTCTGCGACTTTCACGTC
ACCCGGTGCGCCGCCAAAAGCGTTTGGCCTGACTGAAACTCCCAAGCTCA
GACTGCACAAGCACAGTGAACTGCCCTTGTAAAACCTCCTCCTCGCTCTG
CGACTGTAACATCACCAGTTATGCAAGTGCTGAACGCCTCACCCTCACTG
TCGCTGCACATCGCCGCCGCCGCATCGTGGGCGAGCTCATGCAGCCCGGC
GGATCCTTGAAAGCTCAGACCGCACAAAAGTACGCTAAACCCCCTCTCGC
TCTGCCGCTGCGCATCACCAGTTGCACCGCCGCTGAAAAGCCTCGCCCTC
GCTATCACTGGCCGCGCAGGACCGCATCGTGGGCGAGCTCATGCAGCCCG
GCGGCATGCGCGCGCTGGAGACCCTCGGCCTCGCCGCCTGCGCGACTGAG
CGCTGCGACAGCGTGCGCGTCGACGGCTACACCGTCATACTGCCCCCCGG
CGTCAGCGCCGCGCGCCCGGACGGCGCTGAGGCAGTGCTCCACTACCCCG
ACTCAGACCCCGACTCGCTGCTGCAGCAGTTCGGCGCGGGCGTGACGCTG
GAACAGGCGGCGGCGGCGGGGGGGGCGGGGGCGCCAAGGGGGCGCTCTTT
CCACAACTGCAACTTTGTGGCGCGGCTGCGGGAGGTGGCGCGCGCGGAGC
CGAATGTGCGCATGGTGGAGGGGACGGTGACGCAGCTGGTGGAGGAGGGG
GGGGCGGTGGTGGGCGTGCGCTACAAGGTGAGGAGTGGGGGAGAGGGGGG
GGGGTATGTATGCGCAGTTGGTGCACGGGTAGGTTGGTATGCAGATGCGT
GTGTGTGCGTGGAGGAGGGAGGGGCGGTGGGGGGGGGGTGCGCTCCAAGG
TGAGCGGGAAGGGGGGGGGGGTATGGATGCGCGATTGGTGTGCGTGGGTA
GGCAGGTATGGAGGCGCGTGTGCGTGCCAAGTCCGACAGGTGGGGAGCGG
GGCGTGGGCACTGTGGGGTGCGTGTGCGCGGTGCGCCTGTGGGCGTGCAC
TGCAAGGTCAGCGCGGCAGGGTGCGTGTTGGGGGTGACGCGCATGGGGAG
CATGCAGAGGTAGGTAGGTATATACAAGTGTGTGTGTGCGCGCGCGCGTG
TGTGCACATGTGTGTGTCTTTGTGTGTGTGTGCAACTCAGGGTGCTGAGA
TGCGGGCGTGTGCATTGTCAAAGTACCTGTGGGCATGCGTTGTGATTACC
CAAGACGTTGGGCTGAATTTGTCGTGGGTGGTAGATCTCAAGTCAAAGGT
GGGGGAAGGGGGGGTGATGCCGGTGTTTGACAGTTATTTGATGTTGAGCA
TCACACACGCATACGCAGTGCAGTGTGTTGTGCTATTCAGCAGCGGGAGC
ATGCTTCCACCGGAGTAAGTCTGTCGCGCCCAGTCAAGAGAGCAAGGCAG
CGTATCTGAACGAACAGACGCGCTTTGTCAAGCTTACTCCGCATGGCCGC
TCGCCCGACCTTCCACCTCAACAACCCCCCCCCTCACCACCAATACGCCA
CTGACCCTCCCCCCCCCCCCCCCCCCCCACACACGCACACGCCTCCTCAA
ATCACCCCCCCACAGACGCCCGCACCAGAGGGCGCAGACCCCCCAGATGC
GGCCACCCCCGCCAAGCGCCCCGTCCATGAGCTGCGCGCCCCCCTCACCA
TCGTCGCCGACGGCATCTGGAGCGGCCTGCGTGCGTGCGCCAACCCGCAC
AAGCCGCTCCTCATCAGCTCCTTCGTGGGCGTCATCGTGACGCACCCGCC
CATGGCGTCGCCCGTCCCGCACCGCCACTGCGGCCACGTCGTGCTCGCGC
AGCCCTCGCCCATCCTCATCTACCAGATCAGCCCCACGGAGACGCGTGTG
CTGGTGGACGTCGCGGGAAAGATGCCGAGCGCTGCCACGGGGGCGCTGAG
CGCGTTTCTGGTGGAGCAGGCGCGCTGGCTGCCGCCCGTGTTCCGCGCGG
CGTACCTGGAGGCGGTGGCGGCGGGGGGGAGTATCAAGTCGATGCCGAAC
CGCGCGCTCGCGTCCAGCGCCAAGCTCAAGCCCGGGGTGAGTGGCCACTG
AAATTATGTGTTGTGGCTTGCATGTGCAGCTGCGTATACTTTTGAGCTAC
AGTAAAGGGTGAGTGAGCACTGATAAGTACCATGTGTGGCTTGTGCAGCT
GCGTAGAGGCTAAAGCTCAAGCCCGGGGTGAGAGGGCTGTGTATGGATGG
TCTGGAGCTCAAGTCCGGAGTGAGTGAGCACTGATAGGTACTACGTGTTG
TGGCTTGTACGTACAGCTGCGTGTTGTGTTGAGCTATGGGTATGCACGCG
CTCAAGCCCGGGGTGAGTGAGCTCTGATGTTACGTGTTGTGGCTTGTTTG
TACAGCTGCGTAGAGTCTGGAGCTCAAGCCCGGGGTGAGTGAGCGCTGAT
AGGTACTGCGTGTTGTGGCTTGTATGTACAGCTGCGTGTTGTGTGGAGCT
ATGGGTATGCATGCGCTTCGGCAGCCCTGCTTATGGTTCTGCCTGGGCCA
TGATCCTTGACACTCTACAACAGGCTACGTCTTCTAGCATGCGCCACACT
ACAAGAAGTCCTTCATCCAGCCCCCTTGTCATGCTCCGCGCGCATCACAC
CCAAGTCACCGCAGCAACGCTCAACCCCCACCCCCTTCCCCCCCTGCAGG
CCATCCTCATCACCTGCACCACCACACTCCAGCCACCGCAGTGTCGCACA
CACTAGCCACTGCAGCAGCGCTCAATTCCTCATATCCCCCCCCCCTGTAT
CCCCCCCCCCCCCCCCGTCAGGCCATCCTCATCGGCGACGCCCTCAACAT
GCGCCACCCGCTCACGGGCGGCGGCATGACGGTCGCGCTGAAGGACGTGG
CGCTGCTCGCGACGCTGCTCGGCGGCGCCGACCTCGCGGACCGCGCCGCC
GTCGCGCGCGCGTCCGCCGCCTTCCACCGCCGCCGCCGCGGCCACGCCGC
CACCATCAACGTCCTCGCCAACGCGCTGTACGCTGTCTTCACAACACCTG
TCTGCAGCGACGATGATGGTAATGGCGGCGACGTGACGGCGCGCAGCCAC
CTGCAGGACGCGTGCTTCGACTACCTGAGCCTCGGCGGCGCGTACGCGGC
GGGCCCCATAGGCCTGCTCAGCGGGCTCACGCCGCGCCCGGGCGTGCTCG
CCGCGCACTTCTTCATGGTCGCCGCGCATGGCTGCCGCGCGCACCTGCTG
CCGCTGGGGTTTTTGAACCCGCGGCGCTGGCGCCACGTGTACCGTCTGCT
GAGCGTTGCGTGCGGCATCATCATGCCGCTGCTCGAGGTGGAGCGCTCTA
CGCCGCTGTCGTGGCTGCCCGTGCGCAAGGCCGTGCAGCTGCTGTTCCCG
TGGGAGCACCTGCGCTGGGACGCGTGA

Coding sequence (CDS) from alignment at Contig_37:955683..960259+

>mRNA_7899 ID=mRNA_7899|Name=jgi.p|Trimin1|165400|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1875bp|location=Sequence derived from alignment at Contig_37:955683..960259+ (Tribonema minus UTEX_B_3156 )
ATGTACAGCTTTCTGAAGGAGTGGGAAGGCGCTTTGAATCGCATGAACGT
GTTCAAGCTAGCGCTACCTGGACTGGGCGTGTTTGCCAGCATGACGTACT
TCTTTGGCTTCTTTGGCATCAGCTTTGTCAACAGCGTCCTCGGCACGGAC
AACCAGGCGGAGCCATGTGAACTCGACAGTGACAAACCTAACAACAGCAG
CGGCAGCAATGTCGATGAAGCAACAGCAGCAGTGGCCTCTGGCCCCTATG
CACGAAGTGCCCCCGCTTCGTCCGCCAAATATACGCTGGAGCAGCCGGAG
GTGGTGGTGATAGGGGCGGGAACGGCGGGCGCGAGCCTTGCTATTGCGTT
CGCGTGGCAGGGGCGGCGGGTGACGCTGATTGAGAAGAGCTTCGTGCTGC
AGGACCGCATCGTGGGCGAGCTCATGCAGCCCGGCGGCATGCGCGCGCTG
GAGACCCTCGGCCTCGCCGCCTGCGCGACTGAGCGCTGCGACAGCGTGCG
CGTCGACGGCTACACCGTCATACTGCCCCCCGGCGTCAGCGCCGCGCGCC
CGGACGGCGCTGAGGCAGTGCTCCACTACCCCGACTCAGACCCCGACTCG
CTGCTGCAGCAGTTCGGCGCGGGCGTGACGCTGGAACAGGCGGCGGCGGC
GGGGGGGGCGGGGGCGCCAAGGGGGCGCTCTTTCCACAACTGCAACTTTG
TGGCGCGGCTGCGGGAGGTGGCGCGCGCGGAGCCGAATGTGCGCATGGTG
GAGGGGACGGTGACGCAGCTGGTGGAGGAGGGGGGGGCGGTGGTGGGCGT
GCGCTACAAGGTGAGGAGTGGGGGAGAGGGGGGGGGGTATGTATGCGCAC
GCCCCGTCCATGAGCTGCGCGCCCCCCTCACCATCGTCGCCGACGGCATC
TGGAGCGGCCTGCGTGCGTGCGCCAACCCGCACAAGCCGCTCCTCATCAG
CTCCTTCGTGGGCGTCATCGTGACGCACCCGCCCATGGCGTCGCCCGTCC
CGCACCGCCACTGCGGCCACGTCGTGCTCGCGCAGCCCTCGCCCATCCTC
ATCTACCAGATCAGCCCCACGGAGACGCGTGTGCTGGTGGACGTCGCGGG
AAAGATGCCGAGCGCTGCCACGGGGGCGCTGAGCGCGTTTCTGGTGGAGC
AGGCGCGCTGGCTGCCGCCCGTGTTCCGCGCGGCGTACCTGGAGGCGGTG
GCGGCGGGGGGGAGTATCAAGTCGATGCCGAACCGCGCGCTCGCGTCCAG
CGCCAAGCTCAAGCCCGGGGCCATCCTCATCGGCGACGCCCTCAACATGC
GCCACCCGCTCACGGGCGGCGGCATGACGGTCGCGCTGAAGGACGTGGCG
CTGCTCGCGACGCTGCTCGGCGGCGCCGACCTCGCGGACCGCGCCGCCGT
CGCGCGCGCGTCCGCCGCCTTCCACCGCCGCCGCCGCGGCCACGCCGCCA
CCATCAACGTCCTCGCCAACGCGCTGTACGCTGTCTTCACAACACCTGTC
TGCAGCGACGATGATGGTAATGGCGGCGACGTGACGGCGCGCAGCCACCT
GCAGGACGCGTGCTTCGACTACCTGAGCCTCGGCGGCGCGTACGCGGCGG
GCCCCATAGGCCTGCTCAGCGGGCTCACGCCGCGCCCGGGCGTGCTCGCC
GCGCACTTCTTCATGGTCGCCGCGCATGGCTGCCGCGCGCACCTGCTGCC
GCTGGGGTTTTTGAACCCGCGGCGCTGGCGCCACGTGTACCGTCTGCTGA
GCGTTGCGTGCGGCATCATCATGCCGCTGCTCGAGGTGGAGCGCTCTACG
CCGCTGTCGTGGCTGCCCGTGCGCAAGGCCGTGCAGCTGCTGTTCCCGTG
GGAGCACCTGCGCTGGGACGCGTGA