mRNA_7859 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A835YYD8_9STRA (PapD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD8_9STRA) HSP 1 Score: 655 bits (1691), Expect = 3.730e-234 Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 1
Query: 1 MPEVSISPEVVFFSLARQGKPSCEITVSATAAGGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVNKASVKNKRIAVQFRHQASAASLPNQDALSSSRASDASHKPGVPGQAGSGRGLGAGGSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESKALKENLQPLSSDAGSGLAQLKAATPPARRQSGIGMRVVLLLVLLCAAYGWFTSTTRAAPKDAAQLPAPGDGAPPPGLHTPPAAEMVPEKAADTPNETFQEAPAAEATEQLQSDEL 1059
MPEVSISPEVVFFSLARQGKPSCEITVSATAAGGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVNKASVKNKRIAVQFRHQASAASLPNQDALSSSRASDASHKPGVPGQAGSGRGLGAGGSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESKALKENLQPLSSDAGSGLAQLKAATPPARRQSGIGMRVVLLLVLLCAAYGWFTSTTRAAPKDAAQLPAPGDGAPPPGLHTPPAAEMVPEKAADTPNETFQEAPAAEATEQLQSDEL
Sbjct: 1 MPEVSISPEVVFFSLARQGKPSCEITVSATAAGGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVNKASVKNKRIAVQFRHQASAASLPNQDALSSSRASDASHKPGVPGQAGSGRGLGAGGSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESKALKENLQPLSSDAGSGLAQLKAATPPARRQSGIGMRVVLLLVLLCAAYGWFTSTTRAAPKDAAQLPAPGDGAPPPGLHTPPAAEMVPEKAADTPNETFQEAPAAEATEQLQSDEL 353
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A6H5KZG7_9PHAE (MSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG7_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.460e-34 Identity = 108/289 (37.37%), Postives = 149/289 (51.56%), Query Frame = 1
Query: 4 PEVSISPEVVFFSLARQGKPSCEITVSATAAGGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLD--VAEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVNKASVKNKRIAVQFRHQASAA---SLPNQDALSSSRASDA----SHKPGV----PGQAGSGRGL-------------------------GAGGS--------------IAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESK 714
P V I+P+ + F L +P C + VS AAG FKVKTTEP RYLV+PNQG++ G ++ +Y++E+E + L+ V +LG DKFLVQ + A +T++ A+ TE +T++WA NK +++NK++ V+ + AA S N A +S S A S G PG S G+ G GGS + E L KY+DLV YTANLTEERD L SLE+AK++LQ+EMA R+ALESK
Sbjct: 11 PLVDITPDTLSFELFPNSQPGCVLYVS-NAAGVTVAFKVKTTEPRRYLVRPNQGMIGPGEREAVNVYLIEKECNLLIHEGVQTPSSLGKVSDKFLVQTVGLGDGEAALLTSVAAAKQTEALTKIWATFNKTAIRNKKLNVRVSLASGAAKSLSAANNTAAASVAQSPARTVGSDSGGATFASPGSQTSPSGVAARGAYGSRNGGXXXXXXXXXXXGGGGGGSRGGVSRAGGVGGAGLDENSRVLANKYDDLVNYTANLTEERDELNASLEEAKKALQREMATRIALESK 298
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: D7G412_ECTSI (MSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G412_ECTSI) HSP 1 Score: 108 bits (270), Expect = 2.900e-23 Identity = 56/142 (39.44%), Postives = 87/142 (61.27%), Query Frame = 1
Query: 4 PEVSISPEVVFFSLARQGKPSCEITVSATAAGGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLD--VAEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVNKASVKNKRIAVQF 423
P V I+P+ + F L +P C + VS AAG FKVKTTEP RYLV+PNQG++ G ++ +Y++E+E + L+ V +LG DKFLVQ + A +T++ A+ TE +T++WA NK +++NK++ V+
Sbjct: 11 PLVDITPDTLSFELFPNSQPGCVLYVS-NAAGVTVAFKVKTTEPRRYLVRPNQGMIGPGEREAVNVYLIEKECNLLIHEGVQTPSSLGKVSDKFLVQTVGLGEGEAALLTSVAAAKQTEALTKIWATFNKTAIRNKKLNVRI 151
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A7S0UGK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGK8_9STRA) HSP 1 Score: 107 bits (268), Expect = 2.900e-22 Identity = 89/246 (36.18%), Postives = 131/246 (53.25%), Query Frame = 1
Query: 25 EVVFFSLARQGKPSCEITVSATAAGGHAT----FKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLL---DVAEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTE---EVTRLWANVNKAS----VKNKRIAVQFRHQASAASLPNQDALSSSRASDASHKPGVPGQAGSGRGLG--AGGSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESK 714
E+VF + P C +T+ GG +T FKVKTT+P RYLV+PNQGL+ G S +I+I +VE++ LL D + L KDKFLVQ + +++ A + TE +T +W +V ++NK++ V RH ++ P SDA+ P +A S LG + I+ E+ LR KY++LV+++ NLT ERD L +LE KR +E+AAR ALE+K
Sbjct: 13 ELVFSLSPNEATPRCMMTLKH---GGGSTESIAFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQVLLQNYDRLGQSGLDHSKDKFLVQSCAAD----SSLAAKKSGSQTELYDALTAMWNSVTSGGSSTPLQNKKLHV--RHVVDSSPAP--------ATSDAASTPKPKLEAASHSNLGDMSADQISSELSNLRRKYDELVSFSVNLTAERDILSNTLEQTKRDYNREIAARSALENK 241
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: K0R3I0_THAOC (MSP domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3I0_THAOC) HSP 1 Score: 108 bits (269), Expect = 3.300e-22 Identity = 87/239 (36.40%), Postives = 129/239 (53.97%), Query Frame = 1
Query: 97 GGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAE---EGTLGPCKDKFLVQVAPVEPEAFAAV----TALEGARHTEEV----TRLWANV----NKASVKNKRIAVQFRHQASAASLPNQDALSSSRASDASHKPGVPGQAGSGRGLGAG----GSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESKALKENLQPLSSDAG 756
GG+ FKVKTT+P RYLV+PNQG++ G S +++I +V+++ +L + L KDKFLVQ V P+ FAA + EG ++ +E+ T +W ++ SV NK++ V+ SA S A +SS S G+P SG+ A + +EV +LR KY++LV ++ NLT ERD L +LE KR L +E A R ALE + LK + S+ +G
Sbjct: 47 GGYLAFKVKTTQPRRYLVRPNQGIVAPGSSETVSILLVDKDRQQLRATYNRLGQSALDHSKDKFLVQSCAV-PDDFAAQFKNESRGEGGQYKKELVDALTSMWNKATSGGSEISVFNKKLHVKHSVGGSAGSGGTPAASASSPXSSGG---GLPATFDSGKRNNADKMSPDQLQDEVSSLRRKYDELVAFSVNLTAERDILNNTLEQTKRDLNRESATRTALEKQGLKVGSRSASTRSG 281
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A1Z5K8X9_FISSO (Vesicle-associated membrane protein-associated protein A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X9_FISSO) HSP 1 Score: 102 bits (254), Expect = 1.640e-20 Identity = 82/239 (34.31%), Postives = 117/239 (48.95%), Query Frame = 1
Query: 37 FSLARQGK-PSCEITVS-ATAAGGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAE---EGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANV-NKASVKNKRIAVQFRHQASAASLPNQDALSSSRASDASHKPGVPGQAGSGRGLGAGGSIA---------------EEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMA 690
F+L+ Q + PSC + + A+ FKVKTT+P RYLV+PNQGL+E GG++++ I +VE+E + LL E + TL KDKFLVQ A + L + +E+T LWA V N S +A + H K V G SG G GA G+ + E+ +R KY++LV ++ NLT ERD L +LE KR L +E++
Sbjct: 23 FTLSNQEQSPSCSLELRHPDASSAPIAFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQSV-----AILDASKLASLKDYDELTSLWATVGNSPSTSTSAVANKKLHV----------------------KHVVAGNKKSGSGDGAHGNSSISREPIENLTQDQAKAELTNMRRKYDELVAFSVNLTAERDMLNNTLEQTKRDLNRELS 234
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A1E7FVV3_9STRA (MSP domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVV3_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.030e-19 Identity = 81/209 (38.76%), Postives = 116/209 (55.50%), Query Frame = 1
Query: 112 FKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAE---EGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANV----NKASVKNKRIAVQFRHQASAA-SLPNQDALSSSRASDASHKPGVPGQAGSGRGLGAGGSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESK 714
FKVKTT+P RYLV+PNQGL+ G S +I+I +VE++ LL E + L KDKFLVQ V+ + FAA + +T +W +V + A+++NK++ V RH S + SL S S+ P + S + I+ E+ LR KY++LV+++ NLT ERD L +LE KR +EMAAR ALE+K
Sbjct: 15 FKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQALLQSYERLGQSGLDHSKDKFLVQSCTVD-KTFAAKKLGSQTDLYDALTTMWNSVTSGGSSAALQNKKLHV--RHIVSTSPSLAGTSNTSGSKGV----APRLETTQHSNMVEMSADQISSELSNLRRKYDELVSFSVNLTAERDILSNTLEQTKRDYNREMAARSALENK 216
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A7R9WSF8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSF8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.740e-19 Identity = 73/213 (34.27%), Postives = 117/213 (54.93%), Query Frame = 1
Query: 103 HATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAE---EGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVN----KASVKNKRIAVQFRHQASAASLP--NQDALSSSRASDASHKPGVPGQAGSGRGLGAGGSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESK 714
H +K+KTT+P RYLV+PNQG++ GGS +++I ++E++ LL E + L KDKFLVQ V AF++ + E +T +W +V+ +ASV ++++ V+ + ++ + P ++ S +AS + V + + E+ LR KY+DLV+++ NLT ERD L +LE KR +E A R ALESK
Sbjct: 41 HIAYKIKTTQPRRYLVRPNQGMIAPGGSDTVSILLIEKDKQILLQSYEKLGQTGLDHSKDKFLVQSCVVS-SAFSSKLTKDSTELYEALTSMWNSVSNKDSQASVSHRKMHVRHQVVDNSPTSPANGSKTVAKSFKREASSQANVDTMSTD--------QLKSELTNLRRKYDDLVSFSMNLTAERDILSNTLEQTKRDYNREQATRSALESK 244
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A7S2XZQ3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ3_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.240e-19 Identity = 90/264 (34.09%), Postives = 128/264 (48.48%), Query Frame = 1
Query: 112 FKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDVAE-----EGTLGPCKDKFLVQVAPVEPEAFA-AVTALEGARHTEEVTRLWANVNKASVKNKRIAVQFRHQASAASLPNQDALSSSRASD------------------------------------------ASHKP----GVPGQAGSGRGLGAGGSIAE----EVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMAARMALESKALKENLQ 735
FK+KTT+P RYLV+PNQGL+ G S++I I +V+++ LL+ A+ EG DKFLVQ +E + + +L T+E+ +LW V K V+NKR+ V F A + SSSR + A++KP G+ S + SI E E+ LR KY+DLVT+T NLT ERD L + L+D+KR LQ+EM AR+A E+KA + L+
Sbjct: 84 FKIKTTQPKRYLVRPNQGLILPGQSQTIEISLVDKDRIYLLNAAQAAGSTEGINRESTDKFLVQCFSMEVGYYRDRLQSLAPKEATDEIGKLWGVVGKKHVRNKRMRVLFNLPPPNAGVSTSG--SSSRRVELKDPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATNKPNPFSGL--VKNSPAATASSSSIPEAQYAEMAKLRKKYDDLVTFTVNLTAERDMLNKELQDSKRDLQREMLARIATENKANRSGLR 343
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Match: A0A7S3LDL8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDL8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.670e-18 Identity = 74/237 (31.22%), Postives = 113/237 (47.68%), Query Frame = 1
Query: 7 EVSISPEVVFFSLARQGKPSCEITVSATA-AGGHATFKVKTTEPSRYLVQPNQGLLEAGGSRSITIYMVEREASKLLDV---AEEGTLGPCKDKFLVQVAPVEPEAFAAVTALEGARHTEEVTRLWANVNKAS---VKNKRIAVQFRHQASAASLPNQDALSSSRASDASHKPGVPGQAGSGRG--LGAGGSIAEEVDALRTKYNDLVTYTANLTEERDTLRRSLEDAKRSLQKEMA 690
E+S E+ F + + P IT+ + G FKVKTT+P RYLV+PNQG++ AG + + I +VE++ + L + L CKDKFLVQ + P + +G TE T+L +N N S + NK++ V G+ + + RG + AG E++ ++ KY++LV ++ NLT ERD L +LE KR L + MA
Sbjct: 7 EISPESEIKFELSSGEATPKAVITLKHPGGSAGSVAFKVKTTQPRRYLVRPNQGIITAGKTEEVQILLVEKDKNSLYQSFLRLGQAALDNCKDKFLVQSTFLRPSDSLSAGDYDGL--TEFWTKLASNPNDPSLPPISNKKLTVIH--------------------------TGISSEGSTERGGTVPAGAGAETELEQMKKKYDELVAFSVNLTAERDVLNNTLEQTKRDLNRYMA 215 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349151 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7859 ID=mRNA_7859|Name=jgi.p|Trimin1|349151|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1570bp|location=Sequence derived from alignment at Contig_37:585419..596223- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCTGAAGTGAGCATAAGCCCGGAGGTGGTGTTCTTCTCTCTCGCGAGback to top protein sequence of jgi.p|Trimin1|349151 >Trimin1|349151|estExt_Genemark1.C_Ctg_370068 ID=Trimin1|349151|estExt_Genemark1.C_Ctg_370068|Name=jgi.p|Trimin1|349151|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=354bp MPEVSISPEVVFFSLARQGKPSCEITVSATAAGGHATFKVKTTEPSRYLVback to top mRNA from alignment at Contig_37:585419..596223- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7859 ID=mRNA_7859|Name=jgi.p|Trimin1|349151|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10805bp|location=Sequence derived from alignment at Contig_37:585419..596223- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_37:585419..596223- >mRNA_7859 ID=mRNA_7859|Name=jgi.p|Trimin1|349151|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1062bp|location=Sequence derived from alignment at Contig_37:585419..596223- (Tribonema minus UTEX_B_3156 )back to top |