mRNA_7802 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349123
Unique NamemRNA_7802
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835YUJ1_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ1_9STRA)

HSP 1 Score: 1138 bits (2944), Expect = 0.000e+0
Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATRLAPLSQGRVDESGNIECPYHGWSFTAQGGCVKMPHAEPTLRYPARSCATAYLVVHQQLPYDYTTMLENALDPAHADFTHHGSLSSRDRAKPHPCTLDKAGTLHINGFDGAVGPVRRIQFIAPFTVHSSFKLPGMESYFTLYAVPLEPGRARVIQVGQSKTDGFLAQIKRARLQRGLSGVVLSPLLNLPKPLWWTHAQGSGILEEDLPILNVQEKRLAAQGGWSNSATRKAYCTPMGTDLFVTQFYKWWDRFAAGGPWASTAAAAEAWSAVAKQPPLPMDKLLDRYTAHTSICAVCSGALRGVRKARTALTVAAXXXTTMAVLRIRPHAMAALACACATLAWKACGAIEMSLTRGKFPFKRHL 1719
            MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATRLAPLSQGRVDESGNIECPYHGWSFTAQGGCVKMPHAEPTLRYPARSCATAYLVVHQQLPYDYTTMLENALDPAHADFTHHGSLSSRDRAKPHPCTLDKAGTLHINGFDGAVGPVRRIQFIAPFTVHSSFKLPGMESYFTLYAVPLEPGRARVIQVGQSKTDGFLAQIKRARLQRGLSGVVLSPLLNLPKPLWWTHAQGSGILEEDLPILNVQEKRLAAQGGWSNSATRKAYCTPMGTDLFVTQFYKWWDRFAAGGPWASTAAAAEAWSAVAKQPPLPMDKLLDRYTAHTSICAVCSGALRGVRKARTALTVAAXXXTTMAVLRIRPHAMAALACACATLAWKACGAIEMSLTRGKFPFKRHL
Sbjct:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATRLAPLSQGRVDESGNIECPYHGWSFTAQGGCVKMPHAEPTLRYPARSCATAYLVVHQQLPYDYTTMLENALDPAHADFTHHGSLSSRDRAKPHPCTLDKAGTLHINGFDGAVGPVRRIQFIAPFTVHSSFKLPGMESYFTLYAVPLEPGRARVIQVGQSKTDGFLAQIKRARLQRGLSGVVLSPLLNLPKPLWWTHAQGSGILEEDLPILNVQEKRLAAQGGWSNSATRKAYCTPMGTDLFVTQFYKWWDRFAAGGPWASTAAAAEAWSAVAKQPPLPMDKLLDRYTAHTSICAVCSGALRGVRKARTALTVAAXXXTTMAVLRIRPHAMAALACACATLAWKACGAIEMSLTRGKFPFKRHL 573
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A836CEM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM6_9STRA)

HSP 1 Score: 306 bits (785), Expect = 6.800e-91
Identity = 157/211 (74.41%), Postives = 182/211 (86.26%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATR 633
            MAERGV YDAVTYS LLGA ALLAD TKIDMLMS+MREAG+EVTL+CH+EIIR YA GGH QLAEEALQAAV SG+A+P+LAMPL+K C+  QDVAG RRWL+RLPSLG+ATT  MW +A++TAHEAGDA AADALWRDA AAG  S YKAMR+ +T+ GR ++V+RDTP+ LQQPH SALDL+ C++AVAHVALREAARELR+M  PA R
Sbjct:   72 MAERGVPYDAVTYSYLLGASALLADSTKIDMLMSDMREAGVEVTLQCHEEIIRGYAAGGHAQLAEEALQAAVASGYARPFLAMPLMKRCKSTQDVAGARRWLERLPSLGLATTPGMWLVAVQTAHEAGDADAADALWRDAWAAGVVSPYKAMRTVQTATGRFLIVERDTPSPLQQPHKSALDLTRCSIAVAHVALREAARELRQMPSPAIR 282
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835YYG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYG3_9STRA)

HSP 1 Score: 223 bits (568), Expect = 4.800e-66
Identity = 114/136 (83.82%), Postives = 123/136 (90.44%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADAL 408
            MAERGV YDAVTYSLLLGAHALLADHTKIDMLMSEMREAG+EVTL+CHQEIIR YAIGGHVQLAEEALQAAV SGHAQ +LAMPL+KGC RAQDVAG RRWL+RLPSLG+ATT  M  +A+ETAHEAGDA A  +L
Sbjct:   57 MAERGVPYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGVEVTLQCHQEIIRGYAIGGHVQLAEEALQAAVTSGHAQSFLAMPLIKGCRRAQDVAGARRWLERLPSLGLATTPRMLLVAMETAHEAGDADAVPSL 192
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A836CIY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 9.270e-59
Identity = 116/211 (54.98%), Postives = 147/211 (69.67%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATR 633
            M ERG+  DA TY+ LLGA+ALLAD  K++ L + MR AG+ +T  C    +R YA+GGH+Q AE+A +AAV SG A P +   +L+GC RA+D     RWL+R  SLG+A TA+ W LA+ETAHEAGDA AADALWR+A AAGA SLYKAM +     GR V V++  P+LL++ H SALDLS C   +AH A R AAR+LR+  PPA R
Sbjct:  227 MVERGLALDAETYAQLLGAYALLADDAKLEALAAGMRAAGVPLTAACRYCGVRGYALGGHLQRAEDAFEAAVASGDADPKMVKAMLRGCRRARDAQRAERWLRRALSLGLAPTASAWHLAVETAHEAGDADAADALWREAEAAGALSLYKAMSTLHGGCGRAVDVNQ--PSLLRRLHASALDLSRCDAGLAHAAARAAARDLRRAPPPANR 435
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835Z2X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2X8_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.400e-58
Identity = 113/209 (54.07%), Postives = 146/209 (69.86%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPA 627
            M ERG+  +A TY+ LLGA+ALLAD  K++ L + MR AG+ +T +C   ++R YA+GGH+Q AE A +AA  SG A+P +   +++GC RA+D     RWL+R  S+G+A TA+ W LA+ETAHEAGDA AADALWRDA AAGA SLYKAM + R S    +VVD D  +LL+ P  SALDLS C + VA  A R AAR+LR+  PPA
Sbjct:  144 MVERGLDLNADTYAQLLGAYALLADDAKVEALTAGMRAAGVPLTAECRYRVVRGYAMGGHLQHAENAFEAAAASGDAEPTMVKAMMRGCRRARDAQRAERWLRRALSMGLAPTASAWHLAVETAHEAGDAGAADALWRDAEAAGALSLYKAMWTFRGSN--TLVVDVDQLSLLRHPLASALDLSGCDVGVASTAARAAARDLRRAPPPA 350
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835Z7A9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.020e-57
Identity = 115/209 (55.02%), Postives = 149/209 (71.29%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPA 627
            MAERG+T +A TY+ LLGA+ALL DH  ++ L + M   G  +T      ++R YA+GGH+Q AE+AL+AA+ SG A P + + +L+GC  A+D+   +RWLQR  SLG+AT +A W LA+ TAH AGDA AADALWRDA AAGAPSLYKAMR+ R   GR V V++  P+LL++PH SA DLS C + VAH A R AAR+LR+  PPA
Sbjct:  292 MAERGLTLNADTYAHLLGAYALLGDHANVEKLAAGMCAKGAPLTAAGRYRVVRGYAMGGHLQRAEDALEAAIASGDADPTMVIAMLRGCRDARDLPRTKRWLQRSLSLGLATASA-WHLAVGTAHAAGDAGAADALWRDAEAAGAPSLYKAMRTLRGGCGRAVDVNQ--PSLLRRPHASAPDLSRCDVGVAHAAARAAARDLRRAPPPA 497
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835Z883_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z883_9STRA)

HSP 1 Score: 205 bits (522), Expect = 6.620e-57
Identity = 112/211 (53.08%), Postives = 144/211 (68.25%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATR 633
            M E G+  DA TY+ LLGA+ALLAD  K++ L + MR AG+ +T +C   ++R YA+GGH+Q AE+A +AAV SG A+P +   +L+GC RA+DV   RR +QR   LG+  T A W LA+ETAHEAGDA AADALWRDA A GA SLYK M +   S    +VVD D  ++L++P  SALD+S C   VAH A R AAR+LR+  PPA R
Sbjct:  143 MVEHGLKLDAETYAQLLGAYALLADDAKLEALTAGMRAAGVPLTAECRYRVVRGYAMGGHLQRAEDAFEAAVASGDAEPTMVKAMLRGCRRARDVPRARRLVQRALFLGLTLTVAAWHLAVETAHEAGDAGAADALWRDAEATGALSLYKDMWNPPGSS--TLVVDVDRTSVLRRPLASALDISRCDAGVAHAAARAAARDLRRAPPPAVR 351
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835YPB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB5_9STRA)

HSP 1 Score: 207 bits (528), Expect = 6.930e-57
Identity = 115/211 (54.50%), Postives = 146/211 (69.19%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATR 633
            M ERG+  ++ T+S LLGAHA LAD T+I  L S +R AG+ VT  C  +II  YA+ GH+QLAEEAL+AAV+SG A+P + M ++ GC    D +  +RWLQR  SLG+  +AA W +AIETA E GD  AADALW DA AAGA S YK MR  R  +G V++VD D  ++L+QP  SALD+S C + +AH ALR AAREL +M PPA R
Sbjct:  225 MVERGLKLNSETFSYLLGAHARLADQTQITALTSAVRAAGVRVTHACRFQIIEGYALTGHLQLAEEALEAAVQSGQARPDMIMAIVSGCRLVGDASRAQRWLQRSLSLGLTPSAATWHMAIETAQEGGDEGAADALWHDAEAAGALSFYKVMR--RNKEG-VLIVDLDRTSVLRQPLKSALDVSRCNVVLAHAALRAAARELAQMPPPAIR 432
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835YLB5_9STRA (PPC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB5_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.220e-55
Identity = 114/211 (54.03%), Postives = 141/211 (66.82%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYKAMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATR 633
            MAERG  + A TYSL+LGA A L DH K+  L+SEM+ A M++T  C  +II  YA  G  + AE+AL+AAV+ G AQP++ MPLL+ C   +DV+  R WLQR  SL  A TA MW  A+E AH AGDA AADALWRDA+AA  PSLY  MR       +   V  D P+LL++PH+SALD+S C+  VAH ALR AAREL +  PPA R
Sbjct:  235 MAERGFLFGAGTYSLVLGACASLGDHNKLAALVSEMQAADMQLTPVCRFQIISGYASSGCQRHAEKALEAAVKHGDAQPHMFMPLLRACRSMRDVSRARHWLQRSLSLSFAPTADMWHEAVEMAHAAGDADAADALWRDAQAARIPSLYNVMRMQSVGVVQKFFVSFDEPSLLREPHHSALDVSSCSRGVAHAALRAAARELSQARPPAFR 445
[Close]
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Match: A0A835YQI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI6_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.280e-41
Identity = 106/223 (47.53%), Postives = 131/223 (58.74%), Query Frame = 1 
Query:    1 MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQEIIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRRWLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGA----PSLYKAMRSTRTSQG--------RVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAARELRKMAPPATR 633
            MA RGV  DAVTYS LL AHAL  D   +  L+++MR AGME+  +   + IR YA GGH +LAE AL+AAV SG A+ ++ MP+L  C RA+D    RRWL+R  SLG+A            AH AGD  AADALWRDA+AAGA    P  YKAMR +    G         +++VD D PA L+   +SALD+S C   +   ALR  A  LR   PPA R
Sbjct:  256 MARRGVPRDAVTYSRLLEAHALRGDEGGVAALVADMRAAGMELAARHCYQTIRGYAEGGHARLAEAALEAAVESGGAEAFMFMPVLAECRRARDAPRARRWLRRALSLGLA------------AHAAGDDGAADALWRDAQAAGADAGAPCRYKAMRRSGGGDGGSGGAAERHLLLVDVDAPAPLRGARDSALDVSRCGRGMTRAALRAEAAALRAAPPPALR 466
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349123 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUJ1_9STRA0.000e+0100.00Rieske domain-containing protein n=1 Tax=Tribonema... [more]
A0A836CEM6_9STRA6.800e-9174.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYG3_9STRA4.800e-6683.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIY5_9STRA9.270e-5954.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2X8_9STRA2.400e-5854.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7A9_9STRA1.020e-5755.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z883_9STRA6.620e-5753.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPB5_9STRA6.930e-5754.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLB5_9STRA1.220e-5554.03PPC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YQI6_9STRA3.280e-4147.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_37contigContig_37:12015..23089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349123|estExt_Genemark1.C_Ctg_370002
BRITEko00000,ko00001,ko01000
KEGG rclassRC03394
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,map00860,map01110
KEGG koko:K13071
EC1.14.15.17
DescriptionCOGs COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase large terminal subunit
COG categoryP
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG4638@1|root,COG4638@2|Bacteria,1G2NG@1117|Cyanobacteria,1H9U4@1150|Oscillatoriales
Evalue1.05e-36
Seed ortholog1173022.Cri9333_0840
Hectar predicted targeting categoryother localisation
TranscriptId349445
TrackFilteredModels1
ProteinId349123
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349123gene_7802Tribonema minus UTEX_B_3156 geneContig_37 12015..23089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349123Trimin1|349123|estExt_Genemark1.C_Ctg_370002Tribonema minus UTEX_B_3156 polypeptideContig_37 12016..23089 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7802_7exon_7802_7Tribonema minus UTEX_B_3156 exonContig_37 12015..12253 -
exon_7802_6exon_7802_6Tribonema minus UTEX_B_3156 exonContig_37 13221..13435 -
exon_7802_5exon_7802_5Tribonema minus UTEX_B_3156 exonContig_37 14863..15052 -
exon_7802_4exon_7802_4Tribonema minus UTEX_B_3156 exonContig_37 15510..15661 -
exon_7802_3exon_7802_3Tribonema minus UTEX_B_3156 exonContig_37 16581..16703 -
exon_7802_2exon_7802_2Tribonema minus UTEX_B_3156 exonContig_37 18306..18477 -
exon_7802_1exon_7802_1Tribonema minus UTEX_B_3156 exonContig_37 22458..23089 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7802UTR3_7802Tribonema minus UTEX_B_3156 three_prime_UTRContig_37 12015..12015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7802CDS_7802Tribonema minus UTEX_B_3156 CDSContig_37 22458..23089 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7802 ID=mRNA_7802|Name=jgi.p|Trimin1|349123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1723bp|location=Sequence derived from alignment at Contig_37:12015..23089- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAACGCGGGGTGACGTACGATGCAGTGACTTATTCCCTTTTGCT
GGGGGCTCATGCCCTCCTCGCCGATCACACCAAGATAGACATGCTCATGT
CGGAAATGCGGGAGGCAGGCATGGAGGTGACACTCAAGTGCCACCAGGAG
ATCATCCGCGCCTACGCTATCGGCGGGCACGTGCAGCTGGCGGAGGAGGC
CCTACAGGCGGCAGTCAGGAGTGGCCATGCTCAACCGTACTTGGCCATGC
CCCTTTTGAAGGGGTGTGAGCGCGCTCAGGACGTAGCGGGCGTGCGGCGC
TGGCTGCAGCGCCTGCCGTCGCTGGGCATGGCGACGACCGCAGCCATGTG
GCGCTTGGCGATAGAGACGGCGCACGAGGCGGGCGACGCGGCCGCGGCGG
ACGCGCTGTGGCGCGACGCACGCGCAGCGGGCGCGCCCTCCCTCTACAAG
GCCATGCGCAGCACTCGCACCTCGCAGGGGCGCGTGGTGGTCGTTGACCG
GGACACGCCGGCGTTGCTGCAGCAACCGCACAACTCGGCGCTGGACCTTT
CGGACTGCACCATGGCGGTGGCGCACGTTGCGCTGCGGGAGGCGGCGCGG
GAGCTGCGTAAGATGGCGCCGCCGGCGACAAGGCTGGCCCCCCTCTCGCA
AGGCCGCGTAGACGAGAGCGGCAACATTGAGTGCCCCTACCACGGCTGGT
CGTTCACTGCGCAGGGCGGCTGTGTCAAGATGCCCCATGCGGAGCCCACA
CTGCGGTACCCGGCGCGCTCTTGCGCAACGGCCTACCTGGTGGTGCACCA
GCAGCTGCCCTACGACTACACCACCATGCTGGAGAATGCTCTGGACCCTG
CGCATGCCGACTTTACACACCATGGCTCCCTCAGCTCGCGTGACCGTGCA
AAGCCACACCCGTGCACTCTGGACAAAGCTGGTACGCTCCACATTAACGG
TTTCGATGGCGCGGTGGGACCCGTGCGCCGCATACAGTTCATTGCGCCAT
TTACAGTGCACTCAAGCTTCAAGCTGCCAGGCATGGAGTCGTATTTCACG
CTATATGCAGTGCCGCTCGAGCCAGGCAGAGCCCGGGTGATTCAGGTGGG
GCAGAGCAAGACTGACGGGTTTCTTGCGCAGATCAAGCGCGCCAGATTGC
AGCGGGGGCTCAGTGGCGTGGTGCTCTCCCCTCTGCTCAACCTCCCAAAG
CCCCTCTGGTGGACACACGCTCAGGGGAGTGGCATACTAGAGGAAGACCT
GCCCATATTGAATGTTCAGGAGAAACGGCTGGCGGCACAGGGCGGTTGGA
GCAACAGCGCCACCCGCAAGGCATACTGTACACCGATGGGGACAGATCTG
TTTGTCACTCAGTTCTACAAGTGGTGGGACCGGTTTGCAGCAGGGGGGCC
ATGGGCGAGCACTGCTGCAGCAGCTGAGGCATGGAGTGCGGTTGCTAAGC
AGCCCCCGCTGCCCATGGACAAGCTTCTAGACAGGTACACGGCGCACACG
TCCATCTGCGCCGTGTGCAGCGGCGCGCTGCGCGGCGTGCGCAAAGCTCG
CACCGCGCTGACGGTGGCAGCAGCAGCAGCAACCACCATGGCAGTGCTCA
GGATCAGGCCTCACGCGATGGCAGCACTTGCCTGTGCGTGTGCCACACTG
GCCTGGAAAGCGTGCGGAGCCATAGAGATGAGCCTCACGCGTGGCAAGTT
CCCCTTCAAACGCCACCTCTGAG
back to top

protein sequence of jgi.p|Trimin1|349123

>Trimin1|349123|estExt_Genemark1.C_Ctg_370002 ID=Trimin1|349123|estExt_Genemark1.C_Ctg_370002|Name=jgi.p|Trimin1|349123|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=574bp
MAERGVTYDAVTYSLLLGAHALLADHTKIDMLMSEMREAGMEVTLKCHQE
IIRAYAIGGHVQLAEEALQAAVRSGHAQPYLAMPLLKGCERAQDVAGVRR
WLQRLPSLGMATTAAMWRLAIETAHEAGDAAAADALWRDARAAGAPSLYK
AMRSTRTSQGRVVVVDRDTPALLQQPHNSALDLSDCTMAVAHVALREAAR
ELRKMAPPATRLAPLSQGRVDESGNIECPYHGWSFTAQGGCVKMPHAEPT
LRYPARSCATAYLVVHQQLPYDYTTMLENALDPAHADFTHHGSLSSRDRA
KPHPCTLDKAGTLHINGFDGAVGPVRRIQFIAPFTVHSSFKLPGMESYFT
LYAVPLEPGRARVIQVGQSKTDGFLAQIKRARLQRGLSGVVLSPLLNLPK
PLWWTHAQGSGILEEDLPILNVQEKRLAAQGGWSNSATRKAYCTPMGTDL
FVTQFYKWWDRFAAGGPWASTAAAAEAWSAVAKQPPLPMDKLLDRYTAHT
SICAVCSGALRGVRKARTALTVAAAAATTMAVLRIRPHAMAALACACATL
AWKACGAIEMSLTRGKFPFKRHL*
back to top

mRNA from alignment at Contig_37:12015..23089-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7802 ID=mRNA_7802|Name=jgi.p|Trimin1|349123|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=11075bp|location=Sequence derived from alignment at Contig_37:12015..23089- (Tribonema minus UTEX_B_3156 )
ATGGCGGAACGCGGGGTGACGTACGATGCAGTGACTTATTCCCTTTTGCT
GGGGGCTCATGCCCTCCTCGCCGATCACACCAAGATAGACATGCTCATGT
CGGAAATGCGGGAGGCAGGCATGGAGGTGACACTCAAGTGCCACCAGGAG
ATCATCCGCGCCTACGCTATCGGCGGGCACGTGCAGCTGGCGGAGGAGGC
CCTACAGGCGGCAGTCAGGAGTGGCCATGCTCAACCGTACTTGGCCATGC
CCCTTTTGAAGGGGTGTGAGCGCGCTCAGGACGTAGCGGGCGTGCGGCGC
TGGCTGCAGCGCCTGCCGTCGCTGGGCATGGCGACGACCGCAGCCATGTG
GCGCTTGGCGATAGAGACGGCGCACGAGGCGGGCGACGCGGCCGCGGCGG
ACGCGCTGTGGCGCGACGCACGCGCAGCGGGCGCGCCCTCCCTCTACAAG
GCCATGCGCAGCACTCGCACCTCGCAGGGGCGCGTGGTGGTCGTTGACCG
GGACACGCCGGCGTTGCTGCAGCAACCGCACAACTCGGCGCTGGACCTTT
CGGACTGCACCATGGCGGTGGCGCACGTTGCGCTGCGGGAGGCGGCGCGG
GAGCTGCGTAAGATGGCGCCGCCGGCGACAAGGTACATTTTTATGGGTGG
GTCCAGTCCCACGCAGGATGCAATTGCGATAGCAGTCATGAAAATCATGC
GACGCGGGTGCGCACGTGTCAAAGGAGGCAAGCAGGGGCCTGTGGAAGGC
CACGGTGCGGACGCACAGTTAGTGCAAGAATGATGCGGCAGATGGTGATG
TTACACCCACCTGCACTTTGACTTAGGTTGCATCATGCGGCAGCATCAGC
CACTGTGTTTCAAATGGGCATGGCTCAGGTGTGCTGCGAATACAAGCCAC
AGAGTGTACATCAATGCGCAGTCATGTTGCAGCATGTTTCGAAATTTGCT
TTTCTGGTTGGCGTGTCGTGTGTCAGTGCTGTGCGCACTCGTGCAAATGC
AAAGGGTATGCTGAACTCACTTGCTCTTGCCCTTGCACCCTGAACTTGAC
ATTTTCATACCAGAGCGTTATGTATGCGCTTGTGCGAGTTGCACGTACCC
AGCATGCAGTGACATAAGACTTCGTCTTGACTACACTGGAGTCTTACATT
GTGAAAGCGTCTATTTGCCTCCTTAGTATGCATAGCAATACGATTTTCAC
AATTAATGCGTCCTTCGCATAGTCTACTCCTTCATGTGTCGGAGAGTTGG
CGTCTTTGTCATCACTGATGGCAGAATTGCAGCTGTGCAAAATGTTGCGA
GATGATTGCACCACGGATTTGTGAAGTGTATGCTTGAAGCTGCATGAAGT
ATAGCAGGCGCACACCAAATCCCACCCAACCCCCCCTCCCAAACGTTTTT
TTTTAGCTTCAACGATGAAGATGATTCTGACCAGCTGCTCGACACCGCTC
GCAACTGGCTGCGTGGAGATTGTGTGGCATGCATGCTGCGTGCAGGTCAC
ATGACATCCTGCCATTACTTCAAGTTACCATTTTCTCCCCCGACCCAATT
TTTTCATCTGCAACCTGAAGACATATGTCGGATCGATGCTTGATAGCGGA
TGACAATTGCTGCAACAATGGCCGATGCTGCGTTGAAGAGTTGCTCATGC
TGTCTAACCCTAAGTTAACATCAAGAATCATAAACTTCAACACCAAACTG
AAGTTCGCGGCCCGGGAGCGATGAGCTTGAGCTGCTCGTGCTGTTCTCGT
GCTGAGTGCGTACATGCCAGCAGTTCCCAGCTGTTTTGAGAAAAGTATAC
GAGCGGCGGCGTAGCCGCGACTGAACGCGTCGAGCTTGTTGAGTTGAGTT
GAAGTTTGAGCCGCCACAGTTCAAATGTTTTCTTGAGGTTCGCTGGGCTC
GTCCAACGTGAGAGAATCAATTTAGCAGGGTGAAGCTCCCCCCAGCCTCG
AACGGGTGCCCCGCCTTTGCCTGGCACATGTTGAGGCTGCACAGAAGGCT
GCACTGCGGTAGCCTCATGGCGTGGCGTAGAGTTGTTTGCGCTCTCGCAT
TCGTCACGGTGGTGTCGGGCTTTTGTTCGCATCATAGTCACCCAGCTGCT
GCAGCGAGTAGCGCTGCTGCAGCACCTGTGCAGTCAAGAGACCAGTCAAG
CCGTGTGGAGTGGGCAAAACAGTGGTTCCCGATCGGATGCGAGTCGCTTC
TGGACCGTGCCAGGCCTCAACTCCTAAAAGTGCTCAACCAGGCAAGCTCC
ATCACCGCGCGTGACTACGGCAATATTGTATCATACCCGATGAGTGAATT
TATGGCAGCAGCGCTGCCGCAGCGTCGTCAAACGTTGTGCTTCCTAGGAA
CGATATCTGTAACACTGACTGTTGCAATTTGCCCACCATACATTACAACG
ACTGTCACATTTCAATCATGATGTCTTCAAAAAGTCAACTTGCAGGACAC
TGTGGTCTAGTATACATCAAGTTGACGTGCGCCGCATGCTGCAGACCTCA
ACTCAAAGGCACTATGCTGCAAAGCACGCAACTCAAGAGTTAAATGTGCC
CCTGCATCTGGTCTACAGCATCAAGTGAAGAAGTTTAATTAGTTGCCAGC
GTTAAGAGTGTAACAAACAAGTGTGATGATGCATATGCCAGTGAATGACA
AGACCTAAGCAGCTGCCGTTACATGTATGTAGGTCACTGTGGCATTGTCA
CACATATATGACACCTAGTCTAGTAAAGTGCAACCGAGACCCAGTGTTGA
CTTGAAGGCCTGCAGCATTTCAAATTGCAAACCTATTCGCAACTGTTGCA
GTTGGCGGCATCAAAACATGCAGACTATTTCTTGAACTCACAATGACTAC
CTTGCTGATGAAGCGCTTTTGACAATCTGACAAGTCTGCTGTTCGAGTTG
CTTGATGTTTTCGTCATGCGCTCACATGGCTCAGAGCAGCTGAGTTCAAA
GTTTTTCCATCGACAACACGCTGCCCGTCGTCACTGTGGCACCGTGGCAA
CATCACATCACTGCAGCTTACTGAGTCGGGCAACAGTAAGTTTCGATCTG
GCCTGGTTATGATTGCTGCTCTGGTGAGCCCTTTCGGCAGTCTGTGCTTC
GATGTGAAATACGCACTGGGTCATGTGGCAGCAATAATTTGAAGCTTTCA
TCATATTGATATGACTCACATGACAACTTGCGAGTATTGACAGGCCGGAC
GAGTAGCTCAGAGACGACTGCAACAGTAGTGACTGGGAATTTACCGTACT
GTCGACAAGAGAATGACTGCCTGCAGCTTCGCATGTCCCGTCTACCGGTC
AGTATTGAATCATTTAAATGATTATTTGAATGAGCGGACGTTAGGTTGTA
GTAGTAGCTGCCATTGGTATGTTGACCGGCAGCCCTTGTTGTATTGAAGA
TGAGTATAGCAGCTTCAGTCCATCAAAGCTGCCTTAGGTATGCGCACACG
ATGCAGAATCTGTGTGCCTTCAACTTTGTCAAGGTGCTTCAAGACTCACA
TTAAACCCGAATTATCTTGGCCTTTCTTATACTATTGGGTTACTTGTGTG
TGCTGCCAGCCTGCCACAGGACATGACAGTACCCTTCATTCATGCCTAAC
CCTAACCCTAAGAGTATGCGCACGGCATGCCCCCTTAGACTACAACTTTA
GGTCACTGCGGCATGCTGCAAGGGTTGGACATGCATGCAAGCCACTTTGT
TGCAAGTTTTGTATTCATTTTGGCACCATGAGAGGGCAATGCATTCAAGC
GCTGAAGGCATGTAATACTCTTTGAAGTATACTGATCTGTTAAGGGCATC
AGGAACTGTTTGATTGAAGACCGCTTGACGCCCACACATGCACGTATCGA
CGAGTCACTCGCCAGATCTGCCTCGAGCTCTGGGCCAGCATAGTGTGGTT
CAGCATCACACACCAACCTTGTTTCACATGTATTGCTGACTGGCCTGTCA
ATGAGAAACATCACACATACCCTATTCCTAACCTTGACTGGAACCCTCAC
CTCAACCCCAACCATAAACTACCAAGCGCCGAGCTGCTGGGTTGGCTGCG
CCCTGTTGCTACTCTGTACATGCTGGTGCTGTGGCATGAACAAAGCCGCA
GCAACTGTGTACTGATCATTGACTAGCTGAAGTCCGTACTGCGTGCCAGG
CAGTAATCTAATCTTAACCCTGACTCTCACCTTAAATCTAACCCTAACCC
TATCCCCAACCTAAACTCGGTTGTGCGACCGTTGCTTTGAAACGTGATAT
TATAACCCCCTAGCCCCCCGCCCCTGCATAATCTTAACCCTGACCCTGGC
ACTGCCACATCATAAAGATGGAGCTGCACTCACTTTCAATATTCATCGCA
ACATATTGGACTGTCATGCAGGAGCTGGCCCTCCTCTAACCCTGACTATA
ACTTCAATCTTGACCCGTGCAGTTCAAACACTACGTCCATGCAGCCAGCT
GCCACATTCCATGCATGCTGCGATCGTCCACTGAGGCATATAATGCAATC
AAGCTGAATCTGTGGTGCAATGCACTGCGTGCGCTCTCATGCAGGAACTG
GCGCTGTGGTACGACCCCCAGCAAGCGCGATGGAACGCTGTGAATGACGC
CTGCCCGCACAGGCTGGCCCCCCTCTCGCAAGGCCGCGTAGACGAGAGCG
GCAACATTGAGTGCCCCTACCACGGCTGGTCGTTCACTGCGCAGGGCGGC
TGTGTCAAGATGCCCCATGCGGAGCCCACACTGCGGTACCCGGCGCGCTC
TTGCGCAACGGCCTACCTGGTGGTGCACCAGCAGGTATGTATGTATGTGG
TGAGCAGAGGAGGTGTCAATACTATGGTTAGGGTAGGGTTAGGGTTGATG
CAGTGCCAGGCGTACATTGAGGGTAGCCCTAAGACTCTCATTGACAAGGA
AACTGGAAGTGGGAATTTGTACGGAATATAAATTCTGCTCCAAAGTGAAT
GAATGAATGAATGGCTATGCGGCAGGTACCGCCCTGTGTGCTGCGGTGTA
TCAAGTTCTGCTGTACCTACAGATACAGTAAGTGAGTCAAGTCAAAGTGA
GCATGCAGATAGCCGGGTTGGTAATACCAGTGTCATGCTCGTAATGAAGG
CCTTGAACCTCCCTGCTACTCACACTCAGCCATGGTGGAAGGTGGACCGG
AGTCAGGGTGAGCAAGGTACACACAAGTCACAGTGGGGCTTGTTTGTGCG
CTATCACATGATGTACTACTAGCAAAGATAGCAGCAGCGCAGGTACTAGA
GTAAGGACTTACACATGGCAGTATGCTGTACCTGTGCAGCAGGCCCCCAT
GACACGAGTGTGGTCTGTTATTGGAGGGAAAGCAGCCAGCATTAGTGCCA
ATGAGCTCTGCAATTCTATACTATCTGGGCTGTGCCTTGTCCAGCACGAC
AAGCGGCACTGTAATTGGGCGTCTGCTGGTGGTGCGCTCTCCTCTGTGCA
GATGTTGTGTTCTTTTACCCTGCACTTCATAACATGACTTGTTTGAATAG
TGACAAACACGTTGTCCAACACATGCATCATGCGATGATTGTCCAGAGGT
CTCTTGCCTTGGGTGAGTGACCTTGTACTCTGCAGCACTCACTCTAGCAG
CCCTTGCGCCTGCCTATAAGTATTGTGTGTCACTGCCAGGACTAGCGTGA
ACAATTTTTGTCACAAGCGTGAACAATGTTTTGTCATTTTTATTTCGTTT
CCTTGACAGGGCCTATTATGGGCATGGATGGACCCCTCCTCCCCACCCAA
TGACGGGCCACCCGCTAGGAGCATACTTGAGGGTGGCACTGAAGTCTACA
GACACACCGATGTAAGTGTCAGATGGAACGAACTGTAACCTGTGTTGCCT
TCCGAATCGGTCACAAGTCATGAATGCAGTCCCATGAACTAGACTCACCT
TACTTTGAGGTATTCCTGTCAGTATTGCATGTTTTGGTCGTTTGAACTGC
CGAACTTTCATGCTAGTGGCCATGCCACTGCCGCCATCACCAGAACACAT
TCACGGCTGTCCATGGCTCTTACGCGGCGCTGTTGTGAAACCTGCAGATG
ATGCTGAGCACTGCCGCCGCCTGAGCGCTGCCGCCAGTGCTGCTTGAGCC
TTGTCATCCGATCACAGCATGTGCCTTTGACCACCAGGCACGGCCGTCAT
GTTACTCAGGCTGGCGTGTCTGTAAGTTGGTGTCGCCATATTTGCCACTC
TGCGTTAAGTCCGTGCTGTCGCCATGGCCTAATCGTTACTCTGTCACTGA
TGTGCGCGCAGGTGGTCAATGCATTTCGACCTGTACGCCAATTGGCGTCG
TACTTGCACTGACCACCTGGGCGCACACTGCTGTCGCCATGACATATCTC
TTACCCTAGCACTAACCCCATTTGTGGTCGCTTCAGCTGCCCTACGACTA
CACCACCATGCTGGAGAATGCTCTGGACCCTGCGCATGCCGACTTTACAC
ACCATGGCTCCCTCAGCTCGCGTGACCGTGCAAAGCCACACCCGTGCACT
CTGGACAAAGTAAGTGCGTACTCCTCATCCACTCAGAAGGTACTTGATGC
TGCACACTACAGTAGTCTTGTTCAATGTTCTAGTTGTCCTTTGAGACAAC
GCACTGGTGAGGTGCCTGATCTTGACCCTCAGCTGCTTCCTGCTGCAGTC
TACTGAGCGGTAACTGTTGTTTACCTAAGCACACACTGTTGAAGTTGCTC
AGTGACAGTGCTCACGCGCTAACTAATGCACCGTGGGTTATGTGAGCATG
TGTACAGAATATAGTTAAATTTTATGACGCATGTTATATTCCAATTTCAA
CTGAAAACAAGCATGGCACCTGCATGCTCATTACAGCATCAATGCAGTAC
GGTACCTGTCTTGGATACTTTCTCTGGGCATGTGGCAAGCGATCTTGCAC
CTCAGGTGCTGTGGTCGCAACAAGTGTTCCATGTCTATGCATGCACTGAT
ATCTTACTTGCACGATGCATGCATACCGGGATCTCAACGGTTCAGGCAAC
ATCTCAAGTGAAGAGAGTATAAAATAGGTAGCTTCTGAGAGGCTATAGCC
CTTGCGGAAACCTCCGGCACACCTTTGCGACAAGCTTCTACAAGTTGGGT
CCTAGCCGGTGCATACACAGCTTGGTGAGTCCATTTTTCGCCTCTTTGCT
CGTGGTACTGCTGCCCTGCAAGCATGCTGTCACCCCTCAGTCTCACATCA
TTGCCAATGCAGGAGGCTCCATGCACCAAAGACATTACAGTTGTGGGCAT
TTGTGAGTGCTCCTCTGATATGAGCATAGCTGTAACAGTTGCTGGAATGC
TGCTGACAGGCTTTTTTTCATGACATTGTTTTGAAAGCGCCGTGCATCCC
GTGAGCCACAGTCCATCGATCCTTTGTGCCAACCCATGCTGTCCTTGGGC
TGCTGTCGTTGCTGTTGTCATGGTCAAGGCTGGTACGCTCCACATTAACG
GTTTCGATGGCGCGGTGGGACCCGTGCGCCGCATACAGTTCATTGCGCCA
TTTACAGTGCACTCAAGCTTCAAGCTGCCAGGCATGGAGTCGTATTTCAC
GCTATATGCAGTGCCGCTCGAGCCAGGCAGGCAAGTGATGCGTTGATGCC
TGGATAGCTCAACACTTGTGATGTTGATCTTGCGTTCAACCGAGTACACA
CAAATCGGACCCCAGGCAGTGCCAGCTGCACCAGGAAAGCAGGTGAAACA
ATAATGTGGTGAACTTTCCTTCTGTGAACGTAGTAATGGGGGGGCACTAT
CTGGTGCATCACGACAGCATTGTCACATCCAGCTGTGACTGACACCAATC
GCGATCCCTTGCCATGCTTGGCGCACTTCCCACATCATTTATGCAAGCAC
TGTCATAACTCATGCCAAACACAGTAGTACGCTACAGAAACAGGCAGCGT
CGTACACAGGCACGACGCGTTGCTGTGACCAACCACCACGCACGTGTGAA
CTCATTTTCTGCCTGTGAACTTTGATGACAACTTCAGGCGCACATACTGA
CTTCCGGCACAAACTAACCTGAACTCCATCCATGCAGAGCCCGGGTGATT
CAGGTGGGGCAGAGCAAGACTGACGGGTTTCTTGCGCAGATCAAGCGCGC
CAGATTGCAGCGGGGGCTCAGTGGCGTGGTGCTCTCCCCTCTGCTCAACC
TCCCAAAGCCCCTCTGGTGGACACACGCTCAGGGGAGTGGCATACTAGAG
GAAGACCTGCCCATATTGAATGTTCAGGTACGCTGATGCAAGGCAAAATG
GGGTCATCTCACTGACAGTTATTGGCAACAGTTAAAGTGCGCTTTGATAC
TTGGTCTGCCACATGACACAGTGGGATTGCAGTAGCTCTGAGCAGGGTCT
AGGGGTTGCGGCACACGCATACCAAGCGCAGTTTGGAGCTTCGCAACAGA
AGGCGTCGTTGGCAGCTGTGGGGGAAAGGCAGCGGCATCCTCACCCTGGG
CCTCACCCCAAGAGTTGCTGCAATTCTGTGCGTTGAATATCGGCAGCTGA
ATGTACATGCAAATGTTAGTACATTAGCATTCAAGTCAGTGCCGAGCGCG
AGCTTATAGATCCTGCCTCGGGCGTGACTATGCATTGGAATATGCAGTCA
CCACCCATCTCTTCACTCTGAGTGCGTTCAGTCACTGCTAATCGGCATTA
TCATTCCAAGGCCTGAGCTGTGCGCGATGAAGGCTTTCTCGCCATGATGT
GCAGTATACACTTTTATTGTGAAACTCACATAAATAGCAGTCCACGCTAT
CGATCAAGTGGGCCAAAGTGTGGCGCGCTCTGTAGCACACATGCACGTAC
AACAGCTTCTCTTGACACGCTTTCAGAAGCAAGCACTCTTTTCAATTCAT
GATTTTTGTGGATCATGCTGCTGGCATGACATATCTTGCACGCCGGTCTG
CTTCTTCATGATGCCTAACCCTAATCGCAACCCTAACACCAGGTATGCAT
CTACTGTCAGACATTGGACTACCACTGCACTTGCTAGCAGATGTCGGCAT
TGTTCGGTGTTCATCTGTGTCTTGCCCTCATGTCATCATGATGGTGACCC
CAGTGCTGACACCTGTTGTTTTTGTCCCCATTACTGACGCACTTCAGGTG
TATGCGCTTGTCGGCTAGCAGCAAGAGGAACGCACATTGCCACTGAGTGT
TGACCACTCAAGCTGATGTAGCTGTTGCAGAATGAAGTTGCGCTCTGAAC
ACCGCAACTCTGCAATGTTGCAGGAGAAGCAGCTAGCAGCAGAGGTGCTA
CAATTGAGTCAGTGCCGCTATAACATGTTCATGTCACCAACATATAAGTT
GAGCAATGTGACTTTGCTCAACAGTCTGCAATTGCGCAGCACATAGGAGA
AGCAGCCAGCGGCTCAGGGCGGTTGGACGCAAGGTGTACATGAAGCAATT
CAATGCCTTGAGGTATGCCACCACAGAAGTCAAGGCGCCAACAAAGGTTG
AGGTACAACATGACATGCCTCTCGTTACATTGCACTTGCGCCATGCCACA
GGAGAAGCGACTGGCGGCACAGGGCGGTTGGACGCAAGGTGTACTTGAGG
TATTTCAATGCCATTGGGATTGTCACCAAAGAAGTCAAGGCGCCAATCAC
GGTTGAGGTACAACATGACATGGCCACTTGCACTGCAACTGATCCATGTC
GCAGGAGAAACGGCTGGCGGCACAGGGCGGTTGGAGCAACAGCGCCACCC
GCAAGGCATACTGTACACCGATGGGGACAGATCTGTTTGTCACTCAGTTC
TACAAGTGGTGGGACCGGTTTGCAGCAGGGGGGCCATGGGCGAGCACTGC
TGCAGCAGCTGAGGCATGGAGTGCGGTTGCTAAGCAGCCCCCGCTGCCCA
TGGACAAGCTTCTAGACAGGTGAGTATGATCGATTGGCAATTGTGCGCTG
TCCGGGGCAGGCGTTGAGTAAGACGGGCAGGGTGAGCGGTAGGGGCTACT
TTACCGCCTTCAGTCTACCCTTAGAGCTGTGTCAGGCCTTAGGCACTGTC
AGTCGCAAATGCGGTCAAGACATTGGGCACAATTACAAAACTGATGCTGG
TGGCCACTGTCTCAAAAGTAGTCTCATAGCCACATATGGTACTTGCCTGC
AGTGTGCTCATCCACAGTTGGCTTGCTGGTTGCACGTGGGCTCCGCTTAG
AACTCTGAGGTGACCTGTGTAACAAGAGTACACTTCAAGCAGCAGCGGGC
GATGAGGTAACGTTTTGGGGGCTGGACAGGGGGGATGGATCAAGTACCTG
TCACTGTTTGCTGGAGCTTATTTTTGAAAATTGCATTCGGACACATTCTG
AAGCAATTGCCAAGCAAACGTGTGCCCAAGATCCTGCGCCAGCATCGTGT
GAATGCTGTGTTTGTCTCCTTTGGCTCTGGAAATATGTGTCCAGGTGATG
ACACAGAAACGCTGCCATTAATGTTTAAATTGCTTATGCTGTACGCTCTG
TTTCTAATCGCAGGTCAGACACTCCATGCACGCCTTTCTCAACTGCGCGC
AGCATGTTGTTGCAAGAGTAGCAGCAGCTGCTGCTGCTGCTGCCATGACA
GCGTCGCAAGAGCCTAGCATCACAGTGTGACCACGGCTTTGCTTAGTGCA
GCACCGCCCTGCAAATGCCACGACTAGTAGCATTGTACGCACTTGCCCAA
TCGCAGCATGTCAGTGCTTAGCAGCACAACAGTGTTCAGCACGTTACTTT
GATGTACGCCTAATATCAACTGATGGCAGTGCGTACATGCATACGGCAGC
ACACCTACACAGCGCTCACAACCATATCAGCACTACCGCATGGGCTCACA
ACCAACACCTGCCGCCACATACAATCTTACTGGCAGGTACACGGCGCACA
CGTCCATCTGCGCCGTGTGCAGCGGCGCGCTGCGCGGCGTGCGCAAAGCT
CGCACCGCGCTGACGGTGGCAGCAGCAGCAGCAACCACCATGGCAGTGCT
CAGGATCAGGCCTCACGCGATGGCAGCACTTGCCTGTGCGTGTGCCACAC
TGGCCTGGAAAGCGTGCGGAGCCATAGAGATGAGCCTCACGCGTGGCAAG
TTCCCCTTCAAACGCCACCTCTGAG
back to top

Coding sequence (CDS) from alignment at Contig_37:12015..23089-

>mRNA_7802 ID=mRNA_7802|Name=jgi.p|Trimin1|349123|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1722bp|location=Sequence derived from alignment at Contig_37:12015..23089- (Tribonema minus UTEX_B_3156 )
ATGGCGGAACGCGGGGTGACGTACGATGCAGTGACTTATTCCCTTTTGCT
GGGGGCTCATGCCCTCCTCGCCGATCACACCAAGATAGACATGCTCATGT
CGGAAATGCGGGAGGCAGGCATGGAGGTGACACTCAAGTGCCACCAGGAG
ATCATCCGCGCCTACGCTATCGGCGGGCACGTGCAGCTGGCGGAGGAGGC
CCTACAGGCGGCAGTCAGGAGTGGCCATGCTCAACCGTACTTGGCCATGC
CCCTTTTGAAGGGGTGTGAGCGCGCTCAGGACGTAGCGGGCGTGCGGCGC
TGGCTGCAGCGCCTGCCGTCGCTGGGCATGGCGACGACCGCAGCCATGTG
GCGCTTGGCGATAGAGACGGCGCACGAGGCGGGCGACGCGGCCGCGGCGG
ACGCGCTGTGGCGCGACGCACGCGCAGCGGGCGCGCCCTCCCTCTACAAG
GCCATGCGCAGCACTCGCACCTCGCAGGGGCGCGTGGTGGTCGTTGACCG
GGACACGCCGGCGTTGCTGCAGCAACCGCACAACTCGGCGCTGGACCTTT
CGGACTGCACCATGGCGGTGGCGCACGTTGCGCTGCGGGAGGCGGCGCGG
GAGCTGCGTAAGATGGCGCCGCCGGCGACAAGGCTGGCCCCCCTCTCGCA
AGGCCGCGTAGACGAGAGCGGCAACATTGAGTGCCCCTACCACGGCTGGT
CGTTCACTGCGCAGGGCGGCTGTGTCAAGATGCCCCATGCGGAGCCCACA
CTGCGGTACCCGGCGCGCTCTTGCGCAACGGCCTACCTGGTGGTGCACCA
GCAGCTGCCCTACGACTACACCACCATGCTGGAGAATGCTCTGGACCCTG
CGCATGCCGACTTTACACACCATGGCTCCCTCAGCTCGCGTGACCGTGCA
AAGCCACACCCGTGCACTCTGGACAAAGCTGGTACGCTCCACATTAACGG
TTTCGATGGCGCGGTGGGACCCGTGCGCCGCATACAGTTCATTGCGCCAT
TTACAGTGCACTCAAGCTTCAAGCTGCCAGGCATGGAGTCGTATTTCACG
CTATATGCAGTGCCGCTCGAGCCAGGCAGAGCCCGGGTGATTCAGGTGGG
GCAGAGCAAGACTGACGGGTTTCTTGCGCAGATCAAGCGCGCCAGATTGC
AGCGGGGGCTCAGTGGCGTGGTGCTCTCCCCTCTGCTCAACCTCCCAAAG
CCCCTCTGGTGGACACACGCTCAGGGGAGTGGCATACTAGAGGAAGACCT
GCCCATATTGAATGTTCAGGAGAAACGGCTGGCGGCACAGGGCGGTTGGA
GCAACAGCGCCACCCGCAAGGCATACTGTACACCGATGGGGACAGATCTG
TTTGTCACTCAGTTCTACAAGTGGTGGGACCGGTTTGCAGCAGGGGGGCC
ATGGGCGAGCACTGCTGCAGCAGCTGAGGCATGGAGTGCGGTTGCTAAGC
AGCCCCCGCTGCCCATGGACAAGCTTCTAGACAGGTACACGGCGCACACG
TCCATCTGCGCCGTGTGCAGCGGCGCGCTGCGCGGCGTGCGCAAAGCTCG
CACCGCGCTGACGGTGGCAGCAGCAGCAGCAACCACCATGGCAGTGCTCA
GGATCAGGCCTCACGCGATGGCAGCACTTGCCTGTGCGTGTGCCACACTG
GCCTGGAAAGCGTGCGGAGCCATAGAGATGAGCCTCACGCGTGGCAAGTT
CCCCTTCAAACGCCACCTCTGA
back to top