mRNA_7731 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349061
Unique NamemRNA_7731
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349061 vs. uniprot
Match: A0A835YXN7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXN7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.570e-28
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:  286 MPQVFKGGDTSXXXXXXXXXXXXXXXXXXXMTKEQRRERQLRRMQRPGYQPKKSHHIGMMEKLKEKVTGHATASDFI 516
            MPQVFKGGDTSXXXXXXXXXXXXXXXXXXXMTKEQRRERQLRRMQRPGYQPKKSHHIGMMEKLKEKVTGHATASDFI
Sbjct:    1 MPQVFKGGDTSXXXXXXXXXXXXXXXXXXXMTKEQRRERQLRRMQRPGYQPKKSHHIGMMEKLKEKVTGHATASDFI 77
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349061 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YXN7_9STRA1.570e-28100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_35contigContig_35:467742..470089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349061|estExt_Genemark1.C_Ctg_350045
Hectar predicted targeting categoryother localisation
TranscriptId349383
TrackFilteredModels1
ProteinId349061
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349061gene_7731Tribonema minus UTEX_B_3156 geneContig_35 467742..470089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349061Trimin1|349061|estExt_Genemark1.C_Ctg_350045Tribonema minus UTEX_B_3156 polypeptideContig_35 467742..469804 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7731_3exon_7731_3Tribonema minus UTEX_B_3156 exonContig_35 467742..467765 -
exon_7731_2exon_7731_2Tribonema minus UTEX_B_3156 exonContig_35 468661..468729 -
exon_7731_1exon_7731_1Tribonema minus UTEX_B_3156 exonContig_35 469664..470089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7731CDS_7731Tribonema minus UTEX_B_3156 CDSContig_35 469664..469804 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7731UTR5_7731Tribonema minus UTEX_B_3156 five_prime_UTRContig_35 469805..470089 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7731 ID=mRNA_7731|Name=jgi.p|Trimin1|349061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=519bp|location=Sequence derived from alignment at Contig_35:467742..470089- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACAAACCAACGTACTTTCCTTGACTCTAAGTGCCGCTGCCTGGTGCTTA
GTTATGCATTTTAACCAGCGCCTCCTGCTTCTACGGCCGTTTTGACCACG
CGTGACCGACCTATCCACGCTACGCTGCTGCCCGATGCTTGTCCTTGTCT
TCAAGTTGTCGTGGATTTGAGGCCGGAGTCTTCCTGTATTGTCAGGTGCC
GCTGTAAACAACAGCATCTTGTATCCTGTTGAGCGTGTGTACTACTTGTG
CCCAGGCAAGCTTCGCGTCCTTGTGCTTTCTCGCGATGCCTCAGGTGTTC
AAGGGTGGCGACACGAGCTCTTCCAGCTCCAGCGATGACGAGGGAGGCAA
GCGCAAGGCCCAGAGGAGGGCCACCATGACCAAGGAGCAGCGCCGCGAGA
GGCAGCTGAGGAGGATGCAGAGGCCGGGGTACCAGCCCAAGAAGTCTCAC
CACATCGGCATGATGGAGAAGCTCAAGGAGAAGGTCACGGGGCATGCCAC
TGCCAGCGACTTCATATAG
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protein sequence of jgi.p|Trimin1|349061

>Trimin1|349061|estExt_Genemark1.C_Ctg_350045 ID=Trimin1|349061|estExt_Genemark1.C_Ctg_350045|Name=jgi.p|Trimin1|349061|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
MPQVFKGGDTSSSSSSDDEGGKRKAQRRATMTKEQRRERQLRRMQRPGYQ
PKKSHHIGMMEKLKEKVTGHATASDFI*
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mRNA from alignment at Contig_35:467742..470089-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7731 ID=mRNA_7731|Name=jgi.p|Trimin1|349061|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2348bp|location=Sequence derived from alignment at Contig_35:467742..470089- (Tribonema minus UTEX_B_3156 )
TACAAACCAACGTACTTTCCTTGACTCTAAGTGCCGCTGCCTGGTGCTTA
GTTATGCATTTTAACCAGCGCCTCCTGCTTCTACGGCCGTTTTGACCACG
CGTGACCGACCTATCCACGCTACGCTGCTGCCCGATGCTTGTCCTTGTCT
TCAAGTTGTCGTGGATTTGAGGCCGGAGTCTTCCTGTATTGTCAGGTGCC
GCTGTAAACAACAGCATCTTGTATCCTGTTGAGCGTGTGTACTACTTGTG
CCCAGGCAAGCTTCGCGTCCTTGTGCTTTCTCGCGATGCCTCAGGTGTTC
AAGGGTGGCGACACGAGCTCTTCCAGCTCCAGCGATGACGAGGGAGGCAA
GCGCAAGGCCCAGAGGAGGGCCACCATGACCAAGGAGCAGCGCCGCGAGA
GGCAGCTGAGGAGGATGCAGAGGCCGGTGAGAACAGCGAGTTGGCTTTGA
GCAAACTGGCATCGGATATCTGTTCACTTCAGCAAAACCGGCACTCACAA
AGGAGAGAGCACAGGTTGCCACGCAGCAGTATAGATGGGTGGATTTGTAG
CTGCGTGCGCCATACGGGCTCTGCTTATTTCTGGTGCTCAAGATGTCTAG
CTGGGGCATGTGGCTCCGTGTGGTGATGATGTGATCTCTCAAATGCCCGC
ACTCCTCAGCTCAGCGTTGCTGCCAATCTGTGCCTCCAATTGTGTAGACT
CGCGTGCGTAGGGGCCGCGCAGCGCTGCTGCAGTGACGCCTGCACATCAC
CCCAGATCCTCTGTGCTGCCTTCTTTGCAATTTTTTTGTGCTGCCATGAT
TGTTTACAAGTCTAGATGAAAGACGTGTGTGTTTCACCTTGTGCTGCAGA
AGTGCGGTGACCAGGATTAACTTGAAGTACATGGGCTTTTTCGCACCCTG
AGCGAGAATTCATAATAAGTACATGGGCTTAGTACGGTATCCATTCGCAG
CTGGATGACTTGAAGTACATGCATGCCCATGGGCTTCTTTGCGCCCTCAA
TGAGAATTGACTACCAGTACATGGCCCTCACTTTGAGCACGACACATGTT
TGAGGAGCAACCGCACTGCGTGTGTTCTGCTCACCCTGCCGCCCTGCTGG
CTCAAACGCCAGCGGCATGTGTGTCTTGATGTTGTTGTTATACGATCGCC
TTGAGTTCATTTCAAATCGGCAGTCGGCAGTACAGATTTGAGTTTTCCTC
ATCATGTTCATATGCAATACTCAGCATGACATCATGTCAGGCATGCCATG
AGGTCATTGACGACACAAGCGAGGCCACGTTCCACTCGTTGTCGCTGACC
CATGAGAGCGGCTGAGTCTGTTCGGTCTCACCCAAGCCTTCGTGTTCATC
ACTTGCGCAGGGGTACCAGCCCAAGAAGTCTCACCACATCGGCATGATGG
AGAAGCTCAAGGAGAAGGTCACGGGGCATGTAAGTATTAAATTTCAAATT
TATTGCTATCATTGGTGTTCCCAGCGGCTGGCATACATTGTAGTCTGAAG
GTTTACATCAACATTACCTATGTAGAAGTAATTTTGTGTGATTTCTCGCG
TATGATAAGGGTGCGAAAAGGCCCAGATAGACGGTTGTCAAGCTTGCTAC
CAGAGTCACGGGGCATGTCAGTAAGAATTCAATGTATTTTTGTTCATTGA
AGTTTTCCCGTCGGCTGACATACATTGGCTCATGATGTGGCTTTGAGGCA
CCCGGGCGCAGTTGGACTCGGGACACGCTGACTCGGCGGCCAGAGTATGC
TCGTGTGCGAGCACTGGAGGAATCTGTGCAAAAGAAAGCTCAACTTCGAC
CAACCCTGCACCTTTGTCAAGCAGCTTGTGAGATCGCCGTGACGGCGAGA
GTGGCCCGGCGAGAGCGTCCGCAGCCAACGAGCTGCGCCCACTCGAGCCT
TAGCGAATGCGCGAGCCTCAACGAATGCGCGGGGTAGGTTGATGTTGAGC
TTACTTTTGCACAGATTCCTCCAGCACTTGCACACGAGCATAATCGGGTC
ACCGTAGCCAGGGTCCACGCACTCCAGTACCAGGATCGACAATCCATCCA
GGCTCCACAGGGCTGGCATTGGAGACAGGGGTGGGGCATCCGCGCCATTG
GTCTCACTGTCGGATTTTGTACCTTGAGTCAAGAACGGCTGTGATGAGTC
CATGGCGCCGAGCGCATCCCGAGGCAGTGCTCAGCTGGTGTCGACGTCTA
TGTACCTTGTGACGGCTGCGTATGTTTGACGCAGACCCCAACAGAAATTG
CCACGCATGCAAATTCATGCCATCTAAAACCACACCGTGTTTGGAGCGGT
AGCGCCTTATTTTACTGGTAGCAGGCCACTGCCAGCGACTTCATATAG
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Coding sequence (CDS) from alignment at Contig_35:467742..470089-

>mRNA_7731 ID=mRNA_7731|Name=jgi.p|Trimin1|349061|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_35:467742..470089- (Tribonema minus UTEX_B_3156 )
ATGCCTCAGGTGTTCAAGGGTGGCGACACGAGCTCTTCCAGCTCCAGCGA
TGACGAGGGAGGCAAGCGCAAGGCCCAGAGGAGGGCCACCATGACCAAGG
AGCAGCGCCGCGAGAGGCAGCTGAGGAGGATGCAGAGGCCGGGGTACCAG
CCCAAGAAGTCTCACCACATCGGCATGATGGAGAAGCTCAAGGAGAAGGT
CACGGGGCATGCCACTGCCAGCGACTTCATATAG
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