mRNA_7678 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350938
Unique NamemRNA_7678
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350938 vs. uniprot
Match: A0A835YLP5_9STRA (Copper transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP5_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.360e-86
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    1 MQAPTFEWSCTPGAILFSAWEFEGCYMFAEFLLPPQEVEWEHRYGSLGQGPQRGGSADTDNQNPLLPLLLTGLISALGLMSMLIAMTFNAGLFISLVAGEVVGGALWRGAAGGRGGGHMRGASFELV 381
            MQAPTFEWSCTPGAILFSAWEFEGCYMFAEFLLPPQEVEWEHRYGSLGQGPQRGGSADTDNQNPLLPLLLTGLISALGLMSMLIAMTFNAGLFISLVAGEVVGGALWRGAAGGRGGGHMRGASFELV
Sbjct:    1 MQAPTFEWSCTPGAILFSAWEFEGCYMFAEFLLPPQEVEWEHRYGSLGQGPQRGGSADTDNQNPLLPLLLTGLISALGLMSMLIAMTFNAGLFISLVAGEVVGGALWRGAAGGRGGGHMRGASFELV 127
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BLAST of jgi.p|Trimin1|350938 vs. uniprot
Match: A0A835YNJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ1_9STRA)

HSP 1 Score: 585 bits (1507), Expect = 3.340e-207
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 1 
Query:    1 MAVANSADASPSGDNSSGXXXXXSSDSMVNSISTVSEDIRXXXXXXXXXXXXXXXXXXXXXXXXGVIQGGKDADDQPFPDEYLGMKSKDPQLRDHLSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAQKELQHQKQLGANPGVQLLDEVQPFTEFVSSGIKVLKFLEKDRMPQHYFVDSYDAVGFCRKFVAATKTPHWVKPHAVITGLAKLGKSTVLNYVLAAVIREMCPDALIWRYEVGPIGRGGRPVFVLIDEVQRFFTKYDERHDNYSPPSFIFKRLVSPSTMGPPSEVYMAVTGSSMCQAWQGFSSAPPHGHTPSQARYVLTIPVNEDEQGGLSKKCRERADFVIELPEPSTM 1080
            MAVANSADASPSGDNSSGXXXXXSSDSMVNSISTVSEDIRXXXXXXXXXXXXXXXXXXXXXXXXGVIQGGKDADDQPFPDEYLGMKSKDPQLRDHLSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAQKELQHQKQLGANPGVQLLDEVQPFTEFVSSGIKVLKFLEKDRMPQHYFVDSYDAVGFCRKFVAATKTPHWVKPHAVITGLAKLGKSTVLNYVLAAVIREMCPDALIWRYEVGPIGRGGRPVFVLIDEVQRFFTKYDERHDNYSPPSFIFKRLVSPSTMGPPSEVYMAVTGSSMCQAWQGFSSAPPHGHTPSQARYVLTIPVNEDEQGGLSKKCRERADFVIELPEPSTM
Sbjct:    1 MAVANSADASPSGDNSSGXXXXXSSDSMVNSISTVSEDIRXXXXXXXXXXXXXXXXXXXXXXXXGVIQGGKDADDQPFPDEYLGMKSKDPQLRDHLSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAQKELQHQKQLGANPGVQLLDEVQPFTEFVSSGIKVLKFLEKDRMPQHYFVDSYDAVGFCRKFVAATKTPHWVKPHAVITGLAKLGKSTVLNYVLAAVIREMCPDALIWRYEVGPIGRGGRPVFVLIDEVQRFFTKYDERHDNYSPPSFIFKRLVSPSTMGPPSEVYMAVTGSSMCQAWQGFSSAPPHGHTPSQARYVLTIPVNEDEQGGLSKKCRERADFVIELPEPSTM 360
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BLAST of jgi.p|Trimin1|350938 vs. uniprot
Match: A0A836CR61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR61_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.680e-11
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 1 
Query: 1174 WPALQYPLRDPAFKYAYSHNINKDSRHQTKDLLDQDGGLKPGVNSRQRYWHDVRLVRN 1347
            WP  +YPLRD AF +AYSHNIN+  R QT  LLDQDG LK G+  R  YW  +RLV N
Sbjct:  170 WPG-EYPLRDLAFNFAYSHNINQSLRGQTMQLLDQDGRLKTGLRRRLLYWQYLRLVSN 226
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BLAST of jgi.p|Trimin1|350938 vs. uniprot
Match: A0A835Z7A6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.090e-10
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  733 IGRGGRPVFVLIDEVQRFFTK-YDER-HDNYSPPSFIFKRLVSPSTMGPPSEVYMAVTGSSMCQAWQGFSSAPPHGHTPSQARYVLTIPVN 999
            +  GGR VF+LIDE+QRFF     ER    Y  P+  FK LVS S     + V +AVTGSS+ QAW  FS A P+ HT + AR +LTIPVN
Sbjct:   86 LDEGGRHVFILIDEIQRFFNDDVSERLRLGYCSPADFFKDLVSLSQRR--NRVAVAVTGSSLVQAWMSFSEAAPNDHTLAGARRMLTIPVN 174
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BLAST of jgi.p|Trimin1|350938 vs. uniprot
Match: A0A836CIZ1_9STRA (Utp13 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.890e-10
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  745 GRPVFVLIDEVQRFFTK-YDER-HDNYSPPSFIFKRLVSPSTMGPPSEVYMAVTGSSMCQAWQGFSSAPPHGHTPSQARYVLTIPVN 999
            GR +F+L+DE+Q FF     ER    Y    F FK LVSPS     + V +AVTGSSM QAW GFS A P+GHT + AR  LTIPVN
Sbjct: 1595 GRHIFILVDEIQHFFNDDVSERLRLGYRARQF-FKALVSPSQRR--NRVAVAVTGSSMIQAWMGFSEASPNGHTLAGARRTLTIPVN 1678
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BLAST of jgi.p|Trimin1|350938 vs. uniprot
Match: A0A836C8N6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-5
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  862 TMGPPSEVYMAVTGSSMCQAWQGFSSAPPHGHTPSQARYVLTIPVN 999
            T  P   V  AVTGSSM QAW GFS A P+GHT  +AR+ LTIP+N
Sbjct:   72 TEAPRQRVKFAVTGSSMAQAWLGFSYAAPYGHTLEEARHTLTIPIN 117
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350938 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YLP5_9STRA1.360e-86100.00Copper transport protein n=1 Tax=Tribonema minus T... [more]
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BLAST of jgi.p|Trimin1|350938 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YNJ1_9STRA3.340e-207100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CR61_9STRA1.680e-1160.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7A6_9STRA1.090e-1051.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CIZ1_9STRA1.890e-1054.02Utp13 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836C8N6_9STRA1.770e-560.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:622175..623253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350938|estExt_Genemark1.C_Ctg_750090
KEGG TC1.A.56.1
BRITEko00000,ko00001,ko02000
KEGG Pathwayko01524,ko04978,map01524,map04978
KEGG koko:K14686
GOsGO:0000041,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0008150,GO:0009506,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0012505,GO:0015680,GO:0016020,GO:0030001,GO:0030054,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0097305,GO:0097708,GO:0098588,GO:0098805,GO:1901700
Descriptioncopper transporter
COG categoryP
Max annot lvl35493|Streptophyta
EggNOG OGsKOG3386@1|root,KOG3386@2759|Eukaryota,37V85@33090|Viridiplantae,3GJB8@35493|Streptophyta,3I05Q@3699|Brassicales
Evalue0.000219
Seed ortholog90675.XP_010420909.1
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhigh affinity copper transporter
Ec32 orthologEc-09_003290.1
TranscriptId351260
TrackFilteredModels1
ProteinId350938
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350938gene_7678Tribonema minus UTEX_B_3156 geneContig_75 622175..623253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350938Trimin1|350938|estExt_Genemark1.C_Ctg_750090Tribonema minus UTEX_B_3156 polypeptideContig_75 622175..623253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7678_2exon_7678_2Tribonema minus UTEX_B_3156 exonContig_75 622175..622471 -
exon_7678_1exon_7678_1Tribonema minus UTEX_B_3156 exonContig_75 623167..623253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7678CDS_7678Tribonema minus UTEX_B_3156 CDSContig_75 623167..623253 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7678 ID=mRNA_7678|Name=jgi.p|Trimin1|350938|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=384bp|location=Sequence derived from alignment at Contig_75:622175..623253- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCACCCACCTTCGAGTGGTCATGCACTCCTGGAGCCATTCTCTT
CAGCGCCTGGGAGTTTGAGGGCTGCTACATGTTCGCGGAGTTCTTGCTGC
CGCCTCAGGAGGTAGAGTGGGAGCACCGGTACGGGAGCCTGGGCCAGGGA
CCGCAGCGCGGCGGCAGCGCCGACACTGACAACCAAAATCCGCTGCTACC
GCTGCTGCTGACCGGTTTGATCAGCGCGCTTGGCCTGATGAGCATGCTCA
TCGCTATGACGTTCAATGCGGGGCTGTTCATTTCATTGGTCGCTGGGGAG
GTGGTGGGGGGGGCGCTGTGGAGGGGGGCAGCGGGGGGGCGCGGCGGGGG
GCACATGCGCGGCGCCAGCTTCGAACTCGTGTGA
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protein sequence of jgi.p|Trimin1|350938

>Trimin1|350938|estExt_Genemark1.C_Ctg_750090 ID=Trimin1|350938|estExt_Genemark1.C_Ctg_750090|Name=jgi.p|Trimin1|350938|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=128bp
MQAPTFEWSCTPGAILFSAWEFEGCYMFAEFLLPPQEVEWEHRYGSLGQG
PQRGGSADTDNQNPLLPLLLTGLISALGLMSMLIAMTFNAGLFISLVAGE
VVGGALWRGAAGGRGGGHMRGASFELV*
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mRNA from alignment at Contig_75:622175..623253-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7678 ID=mRNA_7678|Name=jgi.p|Trimin1|350938|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1079bp|location=Sequence derived from alignment at Contig_75:622175..623253- (Tribonema minus UTEX_B_3156 )
ATGCAGGCACCCACCTTCGAGTGGTCATGCACTCCTGGAGCCATTCTCTT
CAGCGCCTGGGAGTTTGAGGGCTGCTACATGTTCGCGGTGTCGTGTCTTA
TCACGGCTTGCTTGCCCTGCCTGAGGCAAGCACTGCAGTACCTTCTGAAC
GCTAGGACGGCAGCAGCTACCAGAGTCTCCCAGGCCAGACAAAAATCGCA
GCAAGCGGTGAGTAATACACAAGCAGTATTGCGTAACATCCTGTTCACTC
AGACAACCAACTCGCCATGGCTCCAGAGGGCATACTGCATCCTGTGTTAT
TGTTTGCAACCTGCGCCATGCTGAAGGCAGTAACACAGTATTTGTCATTC
GGTTTCTTGTTTGACAACGCGAATGCATGACATGCCCTCTGCTGGCAGCC
CGCGTAGTGTACCAGTGCCTGAACCCAACCCAGTGATTTGTCACCGAACA
TTGCATGCTCACTACAGTAGATATGCATCAGATCAGCTCATGGCACTTTG
TCAGGCTAGCGCTCCTGATTGCAGCGACAGATGTTGTACCGTTGTGTCCC
GCCTCAGTATAATGCAGCAGTCCAAGGCCCTGGTAGGTGGCTCACAGTAC
AGCAGCAGTGTGAGCCCATGATAGGGCCTGCTGTTTTCACTCCACGTGTT
GTGCGCTCGTACCGCCAATTGTGCAAAAGCACAAAAGCCAACAGCGCCAG
GATGCCAACACGCGCAATTCACTCATAGAAATTCCATTCCTGATGTGCCA
TTTGTGGCGCTGCCGGCCCTGCCCGCCGACAGGAGTTCTTGCTGCCGCCT
CAGGAGGTAGAGTGGGAGCACCGGTACGGGAGCCTGGGCCAGGGACCGCA
GCGCGGCGGCAGCGCCGACACTGACAACCAAAATCCGCTGCTACCGCTGC
TGCTGACCGGTTTGATCAGCGCGCTTGGCCTGATGAGCATGCTCATCGCT
ATGACGTTCAATGCGGGGCTGTTCATTTCATTGGTCGCTGGGGAGGTGGT
GGGGGGGGCGCTGTGGAGGGGGGCAGCGGGGGGGCGCGGCGGGGGGCACA
TGCGCGGCGCCAGCTTCGAACTCGTGTGA
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Coding sequence (CDS) from alignment at Contig_75:622175..623253-

>mRNA_7678 ID=mRNA_7678|Name=jgi.p|Trimin1|350938|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=384bp|location=Sequence derived from alignment at Contig_75:622175..623253- (Tribonema minus UTEX_B_3156 )
ATGCAGGCACCCACCTTCGAGTGGTCATGCACTCCTGGAGCCATTCTCTT
CAGCGCCTGGGAGTTTGAGGGCTGCTACATGTTCGCGGAGTTCTTGCTGC
CGCCTCAGGAGGTAGAGTGGGAGCACCGGTACGGGAGCCTGGGCCAGGGA
CCGCAGCGCGGCGGCAGCGCCGACACTGACAACCAAAATCCGCTGCTACC
GCTGCTGCTGACCGGTTTGATCAGCGCGCTTGGCCTGATGAGCATGCTCA
TCGCTATGACGTTCAATGCGGGGCTGTTCATTTCATTGGTCGCTGGGGAG
GTGGTGGGGGGGGCGCTGTGGAGGGGGGCAGCGGGGGGGCGCGGCGGGGG
GCACATGCGCGGCGCCAGCTTCGAACTCGTGTGA
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