mRNA_7643 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170724
Unique NamemRNA_7643
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A835YK44_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK44_9STRA)

HSP 1 Score: 320 bits (821), Expect = 4.950e-111
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 
Query:    1 MAARYRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGVPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            MAARYRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGVPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN
Sbjct:    1 MAARYRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGVPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 154
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: B7GAQ1_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAQ1_PHATC)

HSP 1 Score: 187 bits (476), Expect = 1.840e-58
Identity = 86/154 (55.84%), Postives = 110/154 (71.43%), Query Frame = 1 
Query:   13 YRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGV----PKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            YR++K +P+EQRLV RRSHIHGWGLFT      +D I+EYMGE IR+ +ADQRE+ YE  G GSCY+F LD   I+DAT+ G  ARF+NHCCGPNA AK+++VD       K+V+ A R ++ GEE+TYDYKF  E+  + C CGA  C G +N
Sbjct:    1 YRRMKAVPIEQRLVARRSHIHGWGLFTKSDIQKDDPIIEYMGEVIRQPIADQRERAYEISGEGSCYMFRLDMQRIVDATKIGCMARFMNHCCGPNAYAKIISVDAELGQDRKIVVFANRDISAGEEITYDYKFPVEDGSLRCTCGAPNCIGRLN 154
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A6H5KGL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL8_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.140e-58
Identity = 95/154 (61.69%), Postives = 115/154 (74.68%), Query Frame = 1 
Query:    7 ARYRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGVPK--LVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            A+YR LK  P    L VRRSHIHGWGLF L  F  + M+VEYMGE +R+CVAD RE KYEEMG+GSCYLF  DA  I+DATR G  ARFINHCC PNA A++V ++G  K  ++IVA+R +  GEE+TYDYKFE E+ +++CHCGA  C GSMN
Sbjct:  440 AQYRMLKTQPTGYGLKVRRSHIHGWGLFALEEFPKDAMLVEYMGEVVRQCVADLREVKYEEMGVGSCYLFRADADAIVDATRKGNLARFINHCCDPNAIARIVNLEGTKKKKIIIVAKRQIKPGEEITYDYKFEREDGQLSCHCGADVCYGSMN 593
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A7S2R6Y7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Y7_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.400e-57
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = 1 
Query:   13 YRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVD-GVPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            Y+K++  P+E RLV +RSH+HGWGLF  +  A +DMIVEYMGE IR  VAD REK+YE+ G+GSCYLF LD   I+DATR G  ARFINH C PNA  KV+ +D G  K+V  A RAL VGEEV YDYKF  E++KI CHCGA +CR  +N
Sbjct:  214 YKKMRSEPMENRLVAKRSHVHGWGLFVRVEVAKHDMIVEYMGESIRSIVADLREKQYEDQGVGSCYLFRLDKDEIVDATRKGCMARFINHSCEPNAYTKVIHLDNGKKKIVFFALRALQVGEEVFYDYKFPIEDEKIPCHCGAPRCRRFLN 364
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: D8LHU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU3_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.680e-56
Identity = 95/154 (61.69%), Postives = 115/154 (74.68%), Query Frame = 1 
Query:    7 ARYRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGVPK--LVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            A+YR LK  P    L VRRSHIHGWGLF L  F  + M+VEYMGE +R+CVAD RE KYEEMG+GSCYLF  DA  I+DATR G  ARFINHCC PNA A++V ++G  K  ++IVA+R +  GEE+TYDYKFE E+ +++CHCGA  C GSMN
Sbjct: 3004 AQYRMLKTQPTGYGLKVRRSHIHGWGLFALEEFPKDAMLVEYMGEVVRQCVADLREVKYEEMGVGSCYLFRADADAIVDATRKGNLARFINHCCDPNAIARIVNLEGTKKKKIIIVAKRQIKPGEEITYDYKFEREDGQLSCHCGADVCYGSMN 3157
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A1Y2CSH6_9FUNG (SET domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CSH6_9FUNG)

HSP 1 Score: 181 bits (458), Expect = 7.550e-56
Identity = 84/141 (59.57%), Postives = 103/141 (73.05%), Query Frame = 1 
Query:   40 EQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGVPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            + RL   RS IH WGLF L P A +D+++EY+GE+IR+ VAD REK YE+ G+GS YLF +D   IIDAT+AG  ARFINHCC PN +AK++ VDG  K+VI A + +A GEEVTYDYKF  E DKI C CGA  CRG +N
Sbjct:    5 KNRLRFARSKIHDWGLFALEPIAVDDIVIEYIGEQIRQKVADHREKIYEKSGIGSSYLFRIDDDNIIDATKAGNLARFINHCCDPNCNAKIITVDGQKKIVIYANKPVAEGEEVTYDYKFPIEEDKIPCLCGATACRGFLN 145
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A7S1DDE7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDE7_CYCTE)

HSP 1 Score: 187 bits (474), Expect = 1.470e-55
Identity = 83/155 (53.55%), Postives = 111/155 (71.61%), Query Frame = 1 
Query:   10 RYRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDG----VPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            +Y+++K +P+++RL  RRSHIHGWGLF  +    + MIVEY+GE +R+C+ D+RE+ YE+ G+GSCY+F LD   I+DATR G  ARF+NHCC PNA AKV+AVD       K+V+ A RA+  GEE+TYDYKF  E+  + C CGA  C G MN
Sbjct:  203 KYKEMKSVPLQERLAARRSHIHGWGLFCKIDLPKDAMIVEYVGETVRQCIGDKREQAYEKSGIGSCYMFRLDLQRIVDATRIGSMARFMNHCCKPNAYAKVIAVDTDFGPEKKIVVFANRAIKAGEEITYDYKFPVEDGSLRCTCGAPNCIGRMN 357
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A7S1U877_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U877_9STRA)

HSP 1 Score: 178 bits (451), Expect = 4.120e-54
Identity = 85/160 (53.12%), Postives = 112/160 (70.00%), Query Frame = 1 
Query:   13 YRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVD--------GVP--KLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            YR LK +P ++R+  +RS IHGWGLFT      + MIVEY+G  I   V D RE  YEE+G+GSCY+F L+ ++I+DATRAG  ARF+NHCC PNA AKV+ V         G+P  ++VI A+R +A+GEE+TYDYKF  E+ K+ C+CGA  CRG+MN
Sbjct:   35 YRILKSVPFQERIEAKRSQIHGWGLFTKTAIRKDGMIVEYIGHLIGNTVGDARETFYEEVGIGSCYMFRLNRTSIVDATRAGNLARFMNHCCQPNAYAKVIQVQPRAAGADAGLPSERIVIFAKRDIALGEEITYDYKFASEDGKLCCNCGAPNCRGAMN 194
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A1Y1XK86_9FUNG (Histone methyltransferase (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XK86_9FUNG)

HSP 1 Score: 176 bits (447), Expect = 4.170e-54
Identity = 80/134 (59.70%), Postives = 99/134 (73.88%), Query Frame = 1 
Query:   61 RSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDGVPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            +S IH WGLF +     NDM++EY+GE IR+ +AD REK+YE MG+GS YLF +D  TIIDAT+ G  ARFINHCC PN +AK++ VDG  K+VI A+R +  GEE+TYDYKF  E DKI C CGA  CRGS+N
Sbjct:   17 KSTIHDWGLFAMERIDANDMVIEYIGEIIRQKIADHREKQYERMGIGSSYLFRIDDDTIIDATKKGNLARFINHCCDPNCNAKIITVDGHKKIVIYAKRDIEEGEEITYDYKFPIEVDKIPCLCGAKNCRGSLN 150
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BLAST of jgi.p|Trimin1|170724 vs. uniprot
Match: A0A2P4YJY1_9STRA (Histone-lysine N-methyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJY1_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.190e-53
Identity = 84/151 (55.63%), Postives = 110/151 (72.85%), Query Frame = 1 
Query:   13 YRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIRRCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNADAKVVAVDG-VPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCRGSMN 462
            YR+L+  P ++R++VR+S IHG+GLF   P     MIVEY G+ I++ VAD+RE++YEE G+GSCY+F LD  TIIDATR G  ARFINH C P A A++V+V+G   K+VI A+R +AVG+EVTYDYKF  E++ I C C A  C G MN
Sbjct:  114 YRELRRRPFDERMLVRKSSIHGYGLFLKEPVTEGQMIVEYQGQMIKQTVADERERRYEEQGIGSCYMFRLDEKTIIDATRCGNLARFINHSCDPKAFARIVSVEGGEKKIVIFAKRPIAVGDEVTYDYKFPIEDEAIRCDCNAPNCIGRMN 264
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170724 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK44_9STRA4.950e-111100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B7GAQ1_PHATC1.840e-5855.84Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A6H5KGL8_9PHAE2.140e-5861.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2R6Y7_9STRA1.400e-5760.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LHU3_ECTSI1.680e-5661.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y2CSH6_9FUNG7.550e-5659.57SET domain-containing protein n=1 Tax=Rhizoclosmat... [more]
A0A7S1DDE7_CYCTE1.470e-5553.55Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1U877_9STRA4.120e-5453.13Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Y1XK86_9FUNG4.170e-5459.70Histone methyltransferase (Fragment) n=1 Tax=Anaer... [more]
A0A2P4YJY1_9STRA1.190e-5355.63Histone-lysine N-methyltransferase n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:377362..377826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170724|e_gw1.75.102.1
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko04121
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04934,ko05202,map00310,map04934,map05202
KEGG koko:K09186,ko:K09188,ko:K11422,ko:K14959,ko:K18494,ko:K22371
EC2.1.1.43,2.3.2.26
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000902,GO:0000904,GO:0000976,GO:0000977,GO:0000980,GO:0000981,GO:0001012,GO:0001067,GO:0001158,GO:0001227,GO:0001541,GO:0001654,GO:0001894,GO:0002376,GO:0002520,GO:0002682,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006479,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007444,GO:0007482,GO:0007548,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007623,GO:0007632,GO:0008023,GO:0008092,GO:0008150,GO:0008152,GO:0008157,GO:0008168,GO:0008170,GO:0008213,GO:0008270,GO:0008276,GO:0008285,GO:0008306,GO:0008354,GO:0008406,GO:0008542,GO:0008585,GO:0008757,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0012505,GO:0015631,GO:0016020,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016458,GO:0016477,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016604,GO:0016607,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018024,GO:0018026,GO:0018027,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019902,GO:0019903,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030030,GO:0030097,GO:0030154,GO:0030182,GO:0030728,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032784,GO:0032786,GO:0032879,GO:0032922,GO:0032968,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034968,GO:0035065,GO:0035097,GO:0035162,GO:0035216,GO:0035295,GO:0035326,GO:0035640,GO:0036211,GO:0040011,GO:0040029,GO:0042054,GO:0042127,GO:0042221,GO:0042330,GO:0042393,GO:0042592,GO:0042800,GO:0042802,GO:0042803,GO:0042826,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043543,GO:0043565,GO:0043933,GO:0043966,GO:0043967,GO:0043984,GO:0044030,GO:0044085,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044648,GO:0044665,GO:0044703,GO:0044728,GO:0044877,GO:0045137,GO:0045322,GO:0045595,GO:0045637,GO:0045652,GO:0045815,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046545,GO:0046660,GO:0046872,GO:0046914,GO:0046983,GO:0048096,GO:0048167,GO:0048168,GO:0048172,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048568,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048736,GO:0048737,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0048873,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051219,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051674,GO:0051704,GO:0060216,GO:0060249,GO:0060255,GO:0060429,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070577,GO:0071339,GO:0071440,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080182,GO:0090304,GO:0097110,GO:0097159,GO:0097485,GO:0097659,GO:0099177,GO:0120036,GO:0120039,GO:0140030,GO:0140033,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901532,GO:1901564,GO:1901576,GO:1901674,GO:1901983,GO:1902036,GO:1902275,GO:1902493,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1905269,GO:1905642,GO:1990234,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000615,GO:2000736,GO:2000756,GO:2001023,GO:2001025,GO:2001038,GO:2001040,GO:2001141,GO:2001252
Preferred namePHF6
Descriptionhistone methyltransferase activity (H3-K4 specific)
COG categoryDK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2940@1|root,KOG1080@2759|Eukaryota,KOG1084@2759|Eukaryota,KOG4443@2759|Eukaryota
Evalue2.75e-57
Seed ortholog2880.D8LHU3
Hectar predicted targeting categoryother localisation
TranscriptId171046
TrackFilteredModels1
ProteinId170724
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170724gene_7643Tribonema minus UTEX_B_3156 geneContig_75 377362..377826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7643_1exon_7643_1Tribonema minus UTEX_B_3156 exonContig_75 377362..377826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7643CDS_7643Tribonema minus UTEX_B_3156 CDSContig_75 377362..377826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170724Trimin1|170724|e_gw1.75.102.1Tribonema minus UTEX_B_3156 polypeptideContig_75 377362..377826 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7643 ID=mRNA_7643|Name=jgi.p|Trimin1|170724|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_75:377362..377826- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGCGCTACCGCAAGCTAAAGGAGATCCCCGTGGAGCAGCGCCT
CGTGGTGCGCCGCAGCCACATCCACGGCTGGGGCCTGTTCACGCTCATGC
CCTTCGCGCCGAACGACATGATCGTGGAGTACATGGGCGAGAAGATCCGG
CGCTGCGTCGCGGACCAGCGCGAGAAGAAGTATGAGGAGATGGGCCTCGG
CTCGTGCTACCTCTTTGCGCTCGACGCGAGCACGATCATCGACGCGACGC
GCGCCGGCGGCCCCGCGCGCTTCATCAATCACTGCTGCGGCCCGAACGCC
GACGCGAAGGTCGTGGCGGTGGACGGCGTGCCGAAGCTGGTCATCGTCGC
GCGGCGCGCGCTCGCGGTCGGCGAGGAGGTGACGTACGACTACAAGTTTG
AGTACGAGAACGACAAGATTGCGTGCCACTGCGGCGCCGCCAAGTGCCGC
GGCTCCATGAACTGA
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protein sequence of jgi.p|Trimin1|170724

>Trimin1|170724|e_gw1.75.102.1 ID=Trimin1|170724|e_gw1.75.102.1|Name=jgi.p|Trimin1|170724|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=155bp
MAARYRKLKEIPVEQRLVVRRSHIHGWGLFTLMPFAPNDMIVEYMGEKIR
RCVADQREKKYEEMGLGSCYLFALDASTIIDATRAGGPARFINHCCGPNA
DAKVVAVDGVPKLVIVARRALAVGEEVTYDYKFEYENDKIACHCGAAKCR
GSMN*
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mRNA from alignment at Contig_75:377362..377826-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7643 ID=mRNA_7643|Name=jgi.p|Trimin1|170724|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=465bp|location=Sequence derived from alignment at Contig_75:377362..377826- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGCGCTACCGCAAGCTAAAGGAGATCCCCGTGGAGCAGCGCCT
CGTGGTGCGCCGCAGCCACATCCACGGCTGGGGCCTGTTCACGCTCATGC
CCTTCGCGCCGAACGACATGATCGTGGAGTACATGGGCGAGAAGATCCGG
CGCTGCGTCGCGGACCAGCGCGAGAAGAAGTATGAGGAGATGGGCCTCGG
CTCGTGCTACCTCTTTGCGCTCGACGCGAGCACGATCATCGACGCGACGC
GCGCCGGCGGCCCCGCGCGCTTCATCAATCACTGCTGCGGCCCGAACGCC
GACGCGAAGGTCGTGGCGGTGGACGGCGTGCCGAAGCTGGTCATCGTCGC
GCGGCGCGCGCTCGCGGTCGGCGAGGAGGTGACGTACGACTACAAGTTTG
AGTACGAGAACGACAAGATTGCGTGCCACTGCGGCGCCGCCAAGTGCCGC
GGCTCCATGAACTGA
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Coding sequence (CDS) from alignment at Contig_75:377362..377826-

>mRNA_7643 ID=mRNA_7643|Name=jgi.p|Trimin1|170724|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=465bp|location=Sequence derived from alignment at Contig_75:377362..377826- (Tribonema minus UTEX_B_3156 )
ATGGCGGCGCGCTACCGCAAGCTAAAGGAGATCCCCGTGGAGCAGCGCCT
CGTGGTGCGCCGCAGCCACATCCACGGCTGGGGCCTGTTCACGCTCATGC
CCTTCGCGCCGAACGACATGATCGTGGAGTACATGGGCGAGAAGATCCGG
CGCTGCGTCGCGGACCAGCGCGAGAAGAAGTATGAGGAGATGGGCCTCGG
CTCGTGCTACCTCTTTGCGCTCGACGCGAGCACGATCATCGACGCGACGC
GCGCCGGCGGCCCCGCGCGCTTCATCAATCACTGCTGCGGCCCGAACGCC
GACGCGAAGGTCGTGGCGGTGGACGGCGTGCCGAAGCTGGTCATCGTCGC
GCGGCGCGCGCTCGCGGTCGGCGAGGAGGTGACGTACGACTACAAGTTTG
AGTACGAGAACGACAAGATTGCGTGCCACTGCGGCGCCGCCAAGTGCCGC
GGCTCCATGAACTGA
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