mRNA_756 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A835ZA78_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA78_9STRA) HSP 1 Score: 379 bits (972), Expect = 6.150e-133 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 Query: 1 MASDEDDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 MASDEDDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL Sbjct: 1 MASDEDDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 188
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A835Z7B6_9STRA (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B6_9STRA) HSP 1 Score: 223 bits (567), Expect = 1.960e-70 Identity = 111/184 (60.33%), Postives = 136/184 (73.91%), Query Frame = 1 Query: 22 AESP---SLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 AE P ++ERVNN+IY Y VS SCAM+RRAIA+AT E Q Y A P+ IELHI+S GG+LM FG++DYI RNPVP+ S IDGYAASA TL+SV C+KRYAY NS+MLLHQLSGGA GK+A++ + V NM L M M + IY + T M E+DE+L+ D WFS++ CLEKGIID IL Sbjct: 62 AEEPEYGAVERVNNKIYMYAEVSAESCAMIRRAIADATQELQQYTAALSISHPLRIELHIQSQGGALMPTFGLVDYICRNPVPIDSFIDGYAASAATLISVSCAKRYAYRNSIMLLHQLSGGASGKFADIEQQVSNMDLFMSMIRNIYLDRTAMNRSEIDEVLATDEWFSARVCLEKGIIDEIL 245
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A836CPU9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPU9_9STRA) HSP 1 Score: 219 bits (558), Expect = 1.920e-69 Identity = 110/187 (58.82%), Postives = 138/187 (73.80%), Query Frame = 1 Query: 4 ASDEDDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 A++ DD + ++ERVNN+IY Y+ VS +C M RRAIA+AT E Q Y A +PV IELHI+S GGSL+ FG++DYI RN VPV S IDG AASA TL+SV+C+KRYAY NS+MLLHQLSG GK+ ++ E V NM L MDM IY + T+M E+DE+LS+D WFS++TCLEKGIID IL Sbjct: 32 AANADDPDYGNVERVNNKIYLYSEVSAEACIMTRRAIADATREIQQYSAALSISQPVRIELHIQSYGGSLLPTFGLVDYICRNSVPVDSFIDGCAASAATLISVLCAKRYAYRNSIMLLHQLSGKTSGKFTDIEEQVSNMDLFMDMICNIYVDRTIMSRSEIDEVLSNDKWFSAKTCLEKGIIDEIL 218
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A835YR95_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR95_9STRA) HSP 1 Score: 214 bits (544), Expect = 2.040e-67 Identity = 104/183 (56.83%), Postives = 135/183 (73.77%), Query Frame = 1 Query: 16 DDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 D++E S+ER N+IY YT V+ SCAM +RAI +AT E Q Y A PEP IELHI+SPGG+L+ FG+ID+I RNPV V S+ID +AASA TL+SV CS+RYAYP+S+M+LHQLSG A GK+ + V+NM L M+M ++IY +HT M EL+ IL+ D WFS+Q CL++GIID IL Sbjct: 30 DESEYGSVERRYNKIYLYTEVTSESCAMTQRAIEDATAEMQQYSTALSIPEPPRIELHIQSPGGALLPTFGLIDFIARNPVSVDSYIDAFAASAATLISVSCSRRYAYPHSIMMLHQLSGSASGKFTEMETQVKNMDLFMEMIRRIYVDHTAMNRSELNGILAKDDWFSAQNCLDRGIIDAIL 212
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A835Z7A8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A8_9STRA) HSP 1 Score: 213 bits (543), Expect = 8.020e-67 Identity = 107/187 (57.22%), Postives = 133/187 (71.12%), Query Frame = 1 Query: 4 ASDEDDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 A D D ++R NNRIYFY+ V+ SCA LRR I EAT E + A E IELHI+SPGG+LM AFG++D+I RNPVPV S+IDGYAASA TL+SV C++RYAY NSLM+LHQLS A GK+A V E + NM L M M +KIY T+M E+DE+L++D WFS++ CLEKGI+D IL Sbjct: 58 ADDSDFGGQAMIKRTNNRIYFYSEVTTESCAALRRFIGEATAEIKQLGAALSMSELPHIELHIQSPGGALMPAFGVVDFITRNPVPVDSYIDGYAASAATLISVSCARRYAYANSLMMLHQLSASASGKFAEVQEQLANMDLFMAMIRKIYETRTVMNVSEIDEVLANDEWFSAEVCLEKGIVDAIL 244
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A2E7TBF6_9GAMM (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Acidiferrobacteraceae bacterium TaxID=2024893 RepID=A0A2E7TBF6_9GAMM) HSP 1 Score: 160 bits (405), Expect = 2.380e-46 Identity = 81/189 (42.86%), Postives = 121/189 (64.02%), Query Frame = 1 Query: 7 SDEDDAESPSLERV---NNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 SD D A+S S +V NNR+YFY+ V+ L + I + Q +P I LHI S GGS+ F +DYI ++ VP+ S IDG AASA T+MSVV ++RY + ++ ML+HQLS G+ GKY ++ +D++N L+M+ K IY EHT + +K+L++IL HD+W+ ++TCLE G++D I+ Sbjct: 25 SDPDAADSDSRNQVSSANNRVYFYSEVTRTKILTLNKKIRSLNITLSNQQNTLTLDKPANIYLHINSYGGSVFAGFSAVDYIKKSKVPIRSVIDGCAASAATIMSVVANERYMHEHAFMLIHQLSAGSWGKYEDLKDDMKNNDLLMETIKNIYDEHTKIPKKQLNKILKHDLWWDAKTCLEYGLVDDII 213
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A2D6IK71_9BACT (ATP-dependent Clp protease proteolytic subunit n=1 Tax=bacterium TaxID=1869227 RepID=A0A2D6IK71_9BACT) HSP 1 Score: 156 bits (394), Expect = 9.400e-45 Identity = 82/186 (44.09%), Postives = 111/186 (59.68%), Query Frame = 1 Query: 10 DEDDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVP-IELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 D D + NNRIYFY+ V+ C L R I TL M + P+P I+LHI S GGS+ +DYI + P+HS I+G AASA T+MSVV KRY N+ ML+HQLS G GKY + +D++N +M+ + IY HT + +K+L+EIL HD+WF S TCLE G++D I+ Sbjct: 24 DSDSNSDNQVSMANNRIYFYSEVTRPDCLNLNRNIQ--TLSDAMVNTSHSYGVPIPPIKLHINSYGGSVFAGLSSVDYIASSRSPIHSIIEGCAASAATIMSVVAEKRYMRKNAFMLIHQLSSGMWGKYEELKDDMENNERLMETIRDIYNNHTKIPKKKLNEILKHDLWFDSDTCLEYGLVDEII 207
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A836CE14_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE14_9STRA) HSP 1 Score: 151 bits (381), Expect = 7.890e-44 Identity = 67/129 (51.94%), Postives = 95/129 (73.64%), Query Frame = 1 Query: 175 PIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGI 561 P+ELH++S GG+LM A I+D I R+PVPVHS ++G+AASA TLM+VVC+ RYA+PNSLML+HQ+SGGAEG A V + V M + + K +Y HT + +L+E++ HD+W ++ C+ KGI+D I Sbjct: 1 PVELHVQSSGGALMPALAIVDTICRSPVPVHSFVEGFAASAATLMTVVCAVRYAHPNSLMLIHQMSGGAEGTLAQVGDRVDGMRTIDKLVKNVYLMHTRIASDDLEELMKHDVWMTASECMHKGIVDEI 129
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A2D9P6W7_9BACT (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D9P6W7_9BACT) HSP 1 Score: 151 bits (381), Expect = 2.890e-42 Identity = 74/176 (42.05%), Postives = 112/176 (63.64%), Query Frame = 1 Query: 37 LERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 + +NN IYFY VS SC L+ + + ++SQ++ L + + +P PI LHI+S GGSL H ++D I PV+++IDG+AASA TL+SVV KRY NSLML+HQLSG GKY + + + NM ++M++ IY T ++ L+ +L D+W ++TCL G++D I+ Sbjct: 77 IHDINNEIYFYGPVSQRSCYELKNRLNDLDVKSQIFHLQY-KIKPPPIHLHIQSQGGSLYHTLYVLDVIQNLKTPVYTYIDGFAASAATLISVVGKKRYMTKNSLMLIHQLSGTDSGKYNELQDQMTNMGVLMNIIGNIYLNRTKLKSAHLNYLLQKDLWLDAETCLGFGLVDEII 251
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Match: A0A2E6PRT8_9FLAO (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2E6PRT8_9FLAO) HSP 1 Score: 148 bits (373), Expect = 1.600e-41 Identity = 74/178 (41.57%), Postives = 110/178 (61.80%), Query Frame = 1 Query: 37 LERVNNRIYFYTSVSGGSCAMLRRAIAEATLE--SQMYQLAFVQPEPVPIELHIRSPGGSLMHAFGIIDYIMRNPVPVHSHIDGYAASAGTLMSVVCSKRYAYPNSLMLLHQLSGGAEGKYANVLEDVQNMALMMDMCKKIYTEHTLMREKELDEILSHDIWFSSQTCLEKGIIDGIL 564 +E +NRIYFY+ V+ L + I + S+ L + +P PI LHI S GGS+ +DYI + +PVH+ IDG AASA TLMS V +RY + N+ ML+HQLSG GK+ + +D+ N ++M+ K IY +HT + +KELD IL HD+W+ ++ CLE G++D ++ Sbjct: 39 VEFSHNRIYFYSGVTRPKILQLNKGIFNLNINMLSKTVPLGY---DPPPINLHINSYGGSVFAGLSAVDYIKNSKIPVHTIIDGCAASAATLMSCVAERRYMHKNACMLVHQLSGVMWGKFQEMQDDMVNSEMLMEKIKNIYKQHTKIPKKELDNILKHDLWWEAEKCLEYGLVDELI 213 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157001 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_756 ID=mRNA_756|Name=jgi.p|Trimin1|157001|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=567bp|location=Sequence derived from alignment at Contig_2:1355687..1356253+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCGTCAGATGAAGATGATGCCGAGTCGCCATCACTTGAGCGTGTCAAback to top protein sequence of jgi.p|Trimin1|157001 >Trimin1|157001|e_gw1.2.296.1 ID=Trimin1|157001|e_gw1.2.296.1|Name=jgi.p|Trimin1|157001|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=189bp MASDEDDAESPSLERVNNRIYFYTSVSGGSCAMLRRAIAEATLESQMYQLback to top mRNA from alignment at Contig_2:1355687..1356253+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_756 ID=mRNA_756|Name=jgi.p|Trimin1|157001|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=567bp|location=Sequence derived from alignment at Contig_2:1355687..1356253+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:1355687..1356253+ >mRNA_756 ID=mRNA_756|Name=jgi.p|Trimin1|157001|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=567bp|location=Sequence derived from alignment at Contig_2:1355687..1356253+ (Tribonema minus UTEX_B_3156 )back to top |