mRNA_7505 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|47524
Unique NamemRNA_7505
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA)

HSP 1 Score: 512 bits (1318), Expect = 3.560e-182
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKACPLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGRDCCARLCR 934
            MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKACPLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGRDCCARLCR
Sbjct:    1 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKACPLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGRDCCARLCR 258
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: D7G689_ECTSI (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G689_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.730e-61
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHA--HEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVS 607
            M+M+RSSKML YVNYRMR+TI+D RVL+GT MAFDRH+N+VLGDCEE+R+ K KKG  A A  HEEREEKR LGLVL+RGENV SLTVEGPPP E+ G A PGGPGVGRAAGRG+P  P  GA P GLAGPVRG+GGPA+S+MQPQA + S
Sbjct:    1 MSMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPTMPVQGA-PRGLAGPVRGIGGPASSMMQPQAVAAS 150
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA)

HSP 1 Score: 197 bits (502), Expect = 5.000e-59
Identity = 110/163 (67.48%), Postives = 128/163 (78.53%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAH----EEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRPTGPPP 637
            M+M++SSKML+Y+NYRMRVTI D+R L+GTFMAFDRHMN+VLGDCEE+RK+K+KKG G        EE+EEKR LGLVL+RGENVVSLTVEGPPPP+E   A PGGPG+GRAAGRG+ +      AP GLAGPVRGVGGPA S+M P A     GF P G PP
Sbjct:    1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPNAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAV----GFPPRGLPP 159
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A7S2HQ73_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ73_9STRA)

HSP 1 Score: 185 bits (470), Expect = 3.410e-54
Identity = 101/131 (77.10%), Postives = 114/131 (87.02%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVR 553
            MAMA+SSKML+++NYRMRVTI DSR L+GTFMAFD+HMN+VLGDCEE+RKIK+KKG G    EEREEKRTLGLVLVRGE VVS++VEGPPPP+  G   PGGPGVGRAAGRG+P AP  G APAGLAGPVR
Sbjct:    1 MAMAKSSKMLNFINYRMRVTIQDSRCLVGTFMAFDKHMNLVLGDCEEYRKIKAKKGVGVQ--EEREEKRTLGLVLVRGEMVVSMSVEGPPPPDNEGKEAPGGPGVGRAAGRGLPAAPL-GVAPAGLAGPVR 128
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A1Y1IDA8_KLENI (SnRNP n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDA8_KLENI)

HSP 1 Score: 184 bits (466), Expect = 1.120e-52
Identity = 103/157 (65.61%), Postives = 124/157 (78.98%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG---GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQGFRP 622
            M+M++SSK+LH++NYRMRVT+ D R L+G FMAFD+HMN+VLGDCEE RK+  KKG+ A   E+REE+RTLGL+L+RGE VVSLTVEGPPP EE      A  GGPGVGRAAGRG+P AP   AAP GLAGPVRGVGGPAA++MQPQ   ++    P
Sbjct:    1 MSMSKSSKLLHHINYRMRVTLQDGRQLVGKFMAFDKHMNLVLGDCEEFRKLPQKKGKSA---EDREERRTLGLLLLRGEEVVSLTVEGPPPQEESRAKAMAASGGPGVGRAAGRGIPTAPLGQAAP-GLAGPVRGVGGPAAAMMQPQGRGIAAAAAP 153
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A6V3BNK5_HETAK (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BNK5_HETAK)

HSP 1 Score: 178 bits (451), Expect = 1.560e-51
Identity = 98/131 (74.81%), Postives = 111/131 (84.73%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVR 553
            M+M+RSSKML Y+NYRMRVT+ D R+L+GTFMAFDRHMN+ LGD EE+RK+K+KKGQG    E+REEKR LGLVLVRGENVVSL+VEGPPPPE+   A PGGPG GRAAGRG   APAAGA P GLAGPVR
Sbjct:    1 MSMSRSSKMLQYINYRMRVTLQDGRMLVGTFMAFDRHMNLCLGDTEEYRKLKNKKGQGVV--EDREEKRALGLVLVRGENVVSLSVEGPPPPEDDAKATPGGPGAGRAAGRGTVQAPAAGA-PVGLAGPVR 128
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: UPI001C4E8A0F (small nuclear ribonucleoprotein-associated proteins B and B'-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001C4E8A0F)

HSP 1 Score: 180 bits (457), Expect = 2.340e-51
Identity = 102/149 (68.46%), Postives = 119/149 (79.87%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG-----GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQ 592
            M+M++SSKML Y+NYRMRVTI D R L+G FMAFDRHMN+VLGDCEE RK+   KG+    +EEREE+RTLGLVL+RGE VVS+TVEGPPPPEE      G A   GPG+GRAAGRG+P AP   A P GLAGPVRGVGGPA+++MQPQ
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---KNEEREERRTLGLVLLRGEEVVSMTVEGPPPPEESRAKAVGAAAMAGPGLGRAAGRGIPTAPLVQAQP-GLAGPVRGVGGPASNMMQPQ 145
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A822XXF9_NELNU (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XXF9_NELNU)

HSP 1 Score: 177 bits (450), Expect = 2.910e-51
Identity = 100/149 (67.11%), Postives = 117/149 (78.52%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG-----GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQ 592
            M+M++SSKML Y+NYRMRVTI D R L+G FMAFDRHMN+VLGDCEE RK+   KG+    +EERE++RTLGLVL+RGE VVS+TVEGPPPP+E      G A   GPG+GRAAGRG+P AP   A P GLAGPVRGVGGPA  +MQPQ
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---KNEEREDRRTLGLVLLRGEEVVSMTVEGPPPPDENRAKASGAAAMAGPGIGRAAGRGIPTAPLVQAQP-GLAGPVRGVGGPAPGMMQPQ 145
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: A0A5J5B5C3_9ASTE (Small nuclear ribonucleoprotein-associated protein n=3 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5B5C3_9ASTE)

HSP 1 Score: 179 bits (455), Expect = 3.920e-51
Identity = 102/149 (68.46%), Postives = 117/149 (78.52%), Query Frame = 2 
Query:  161 MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEG-----GTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQ 592
            M+M++SSKML Y+NYRMRVTI D R LIG FMAFDRHMN+VLGDCEE RK+   KG+    +EEREE+RTLGLVL+RGE V+S+TVEGPPPPEE      G A   GPG+GRAAGRG+P AP   A P GLAGPVRGVGGPA  +MQPQ
Sbjct:    1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---KNEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVGAAAMAGPGIGRAAGRGIPTAPLIQAQP-GLAGPVRGVGGPAPGMMQPQ 145
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BLAST of jgi.p|Trimin1|47524 vs. uniprot
Match: W7TUE2_9STRA (Small nuclear ribonucleoprotein associated protein b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUE2_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.860e-51
Identity = 98/144 (68.06%), Postives = 116/144 (80.56%), Query Frame = 2 
Query:  140 PCRQSATMAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKGQGAHAH----EEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGV 559
            P  +  TM+M++SSKML+Y+NYRMRVTI D+R L+GTFMAFDRHMN+VLGDCEE+RK+K+KKG G        EE+EEKR LGLVL+RGENVVSLTVEGPPPP+E   A PGGPG+GRAAGRG+ +      AP GLAGPVRGV
Sbjct:   28 PSYRFQTMSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGV 171
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|47524 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CGG1_9STRA3.560e-182100.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
D7G689_ECTSI1.730e-6173.51Small nuclear ribonucleoprotein-associated protein... [more]
A0A4D9CW50_9STRA5.000e-5967.48Small nuclear ribonucleoprotein-associated protein... [more]
A0A7S2HQ73_9STRA3.410e-5477.10Small nuclear ribonucleoprotein-associated protein... [more]
A0A1Y1IDA8_KLENI1.120e-5265.61SnRNP n=1 Tax=Klebsormidium nitens TaxID=105231 Re... [more]
A0A6V3BNK5_HETAK1.560e-5174.81Small nuclear ribonucleoprotein-associated protein... [more]
UPI001C4E8A0F2.340e-5168.46small nuclear ribonucleoprotein-associated protein... [more]
A0A822XXF9_NELNU2.910e-5167.11Small nuclear ribonucleoprotein-associated protein... [more]
A0A5J5B5C3_9ASTE3.920e-5168.46Small nuclear ribonucleoprotein-associated protein... [more]
W7TUE2_9STRA4.860e-5168.06Small nuclear ribonucleoprotein associated protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:423094..429313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|47524|CE47523_459
KEGG TC2.A.105.1
BRITEko00000,ko00001,ko00002,ko02000,ko03029,ko03032,ko03041,ko04131,ko04147
KEGG ModuleM00351,M00352,M00354,M00355,M00398,M00409
KEGG Pathwayko03040,ko04144,ko05322,map03040,map04144,map05322
KEGG koko:K11086,ko:K11100,ko:K12184,ko:K20824,ko:K22138
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0008406,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030532,GO:0030620,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0036211,GO:0042221,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044877,GO:0045137,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051117,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0060322,GO:0061458,GO:0065003,GO:0070013,GO:0070034,GO:0070990,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071204,GO:0071208,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990447,GO:1990904
Preferred nameSNRPB
DescriptionmRNA splicing, via spliceosome
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1958@1|root,KOG3168@2759|Eukaryota
Evalue6.08e-63
Seed ortholog2880.D7G689
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein B
Ec32 orthologEc-10_000980.1
TranscriptId47846
TrackFilteredModels1
ProteinId47524
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|47524gene_7505Tribonema minus UTEX_B_3156 geneContig_24 423094..429313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|47524Trimin1|47524|CE47523_459Tribonema minus UTEX_B_3156 polypeptideContig_24 423254..429267 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7505_1exon_7505_1Tribonema minus UTEX_B_3156 exonContig_24 423094..423256 +
exon_7505_2exon_7505_2Tribonema minus UTEX_B_3156 exonContig_24 423595..423741 +
exon_7505_3exon_7505_3Tribonema minus UTEX_B_3156 exonContig_24 424748..424969 +
exon_7505_4exon_7505_4Tribonema minus UTEX_B_3156 exonContig_24 427431..427484 +
exon_7505_5exon_7505_5Tribonema minus UTEX_B_3156 exonContig_24 428917..429313 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7505UTR5_7505Tribonema minus UTEX_B_3156 five_prime_UTRContig_24 423094..423253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7505CDS_7505Tribonema minus UTEX_B_3156 CDSContig_24 423254..423256 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7505UTR3_7505Tribonema minus UTEX_B_3156 three_prime_UTRContig_24 429268..429313 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7505 ID=mRNA_7505|Name=jgi.p|Trimin1|47524|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=983bp|location=Sequence derived from alignment at Contig_24:423094..429313+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGTGGGGTTGGCTGGCATCTGCATCGCAGCGTGAGAGCGCCGGAGCAGC
AATCTTACAGTCGGGCCTAATTGCTGTGGCGTGGAAAGGGAGCAAGGAGC
ACCCCGAGACATAAAAAGTAGCTTTTTTTCAGGGCGAGGCCCTGCCGCCA
ATCCGCAACCATGGCGATGGCACGGAGCAGCAAGATGCTGCACTACGTCA
ACTATCGCATGAGGGTCACAATAATGGACAGCCGCGTCCTCATTGGCACC
TTCATGGCCTTTGACCGCCATATGAACATCGTCCTCGGTGACTGCGAGGA
ACACCGCAAGATCAAGTCAAAGAAGGGCCAGGGCGCGCACGCGCACGAGG
AGCGGGAGGAGAAGCGCACGCTGGGTCTCGTGCTCGTGAGAGGAGAGAAC
GTTGTGTCGCTGACAGTGGAGGGTCCCCCGCCCCCTGAGGAAGGGGGCAC
CGCGAAGCCGGGGGGTCCGGGGGTTGGGCGCGCGGCGGGGAGGGGCATGC
CGCTGGCGCCCGCTGCGGGGGCCGCGCCCGCGGGCCTTGCTGGACCGGTT
CGCGGCGTTGGCGGGCCAGCAGCGTCCATCATGCAGCCACAAGCCGCTTC
CGTCAGTCAGGGCTTCAGGCCCACCGGACCCCCCCCGGTGGCAGGGGCAT
GCCCCCCCCGCCCATGCAGGGCATGCCCCCCCCCGGCTTCCCCGGCCCAG
GGGGCGCTTTTGGGGGGCCAAGGGGGATGCCGCCGCCAGGTATGCCCCCC
CAAGGCATGCCCCCTGGAGGCCCCCCTGGATTTCCCCCCATGGGCATGCC
CCCCCCAGGGGGGCGGGGGTACCCCCCTAGGCCGCCGATGTAAGGGCGGA
GGGATCGGTTCTGCTAGGAGCGTTGGTAGGAATCGCTGGGGGGGGTGGCG
TTTGGGGCGTGATTGCTGTGCGCGGCTGTGTCGCTGAGGGGAGGGGGTAA
AGGCTCCTTGGAGGGCTGTGGGAATGATGGGAC
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protein sequence of jgi.p|Trimin1|47524

>Trimin1|47524|CE47523_459 ID=Trimin1|47524|CE47523_459|Name=jgi.p|Trimin1|47524|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MAMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRK
IKSKKGQGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKP
GGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVSQ
GFRPTGPPPVAGACPPRPCRACPPPASPAQGALLGGQGGCRRQVCPPKAC
PLEAPLDFPPWACPPQGGGGTPLGRRCKGGGIGSARSVGRNRWGGWRLGR
DCCARLCR*
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mRNA from alignment at Contig_24:423094..429313+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7505 ID=mRNA_7505|Name=jgi.p|Trimin1|47524|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6220bp|location=Sequence derived from alignment at Contig_24:423094..429313+ (Tribonema minus UTEX_B_3156 )
GCGTGGGGTTGGCTGGCATCTGCATCGCAGCGTGAGAGCGCCGGAGCAGC
AATCTTACAGTCGGGCCTAATTGCTGTGGCGTGGAAAGGGAGCAAGGAGC
ACCCCGAGACATAAAAAGTAGCTTTTTTTCAGGGCGAGGCCCTGCCGCCA
ATCCGCAACCATGGTGAGTTGTTGGCATGGCTGCTCATGGCTTGATGAAG
GCAGATTCAGGATTGCTTGTTGGGACGATTGGGAATGATGGCTCGTTTTC
GTTGTGTGGTGATTGCGTTCCTCTCTGTCAGATGGCCGCTTGTGTGTGTG
CCTCAATGCCAGGATTAGCAAGCCTGTCGGCAGCAATGTCGATGTTGTGG
CTAATCTGGTGTGGATTCGACCAGCTTCATGTACTATAAAGTCACGTTCA
TGAGCCGCTTCGCAGTTGTGCAGTTGATTTGGATGCTGTCACTACTAGTA
GTGTACGCTTTTCTCAGCATTCGCACGATCTTCGGTGTTGCTCCTGCGCA
GGCGATGGCACGGAGCAGCAAGATGCTGCACTACGTCAACTATCGCATGA
GGGTCACAATAATGGACAGCCGCGTCCTCATTGGCACCTTCATGGCCTTT
GACCGCCATATGAACATCGTCCTCGGTGACTGCGAGGAACACCGCAAGGC
AAGCCCACACAGACGGTGTCGAGCTGGATAATTGCTCTGTTGCTGCCGCT
CGTCTCATACTTGCTCTTAGAATGACCAAATATCCTAGTGTCATGTCCGC
TTGTGCACACTCCACTGGGACCGTCATCATCATGATCATCAATCAAACAT
GGCACAGGACTTGAAGTGCTCGAGTTCATCACCCTCCTCACCGCGCCTGT
GTATATTGGAGCCAGGATCGTACTTGAAAACAGGACGCAACGCGCGCCCC
ATCTAGCATGCAACGATGACTGCCCGCTGCCAACCGAGTGCTGCCTGCAT
GATGCCCACATGTAGGGAGTATGTATGGATGCCCATGCCGCGTGTGACTC
TCCCACAATGAATGCTGACGCAGCGTTTGCTGGCGCGCTGTAAGCTATTG
CAACGAAAGGCAGGGTGGCCACAAGTTGAAGCAAAATTTGAAGTACATAC
TGCCCCCCCCCCCATGCTTTACCGCACCGTCGAGTGGTCAGGGACAAAAT
GCGCTTTGCACGTCAGTGTGTGTTTCTGGGGTCTTGATATGGCGGTGTAT
ATGCTTATGGTGCGATTACGCAAGCACTGCTCACCGTACAGTGTCATGGT
GCACCAGCGCCAGCAGCGCGCGTTCAGTCAAGCGGACGCGCAAGCCTTCG
CCGTTCGTGCCTCAACTGTCGTACACGCAGTGCGGCCGGCGTTGCTGCTA
AGCGCCCCGTGGCTGGGCGCTTCCTGAAGTATGGGGGGGGCAGGGGTGCA
AGGGCGGGGTTGAGATTAGGTAGGTATGCATGTCCCATGCGCAACGGGTC
CAAGCGCGGCGCAGAGGTACATACGAAGTGTGCGGCAGTGGCCTTCGCTG
CCATCGCAAGAACTTCAACTCACCGTTACTTTCGTGAACTGAACCCCCAC
CGCCTGCCCCCCATGCAGATCAAGTCAAAGCTCCCATGAACTGACGCCCC
GAGTCACCCCCCCCCCCCCCTTCCCCCCCTCCCCCCCCTGCCCCCCCCCT
GCAGATCAAGTCAAAGAAGGGCCAGGGCGCGCACGCGCACGAGGAGCGGG
AGGAGAAGCGCACGCTGGGTCTCGTGCTCGTGAGAGGAGAGAACGTTGTG
TCGCTGACAGTGGAGGGTCCCCCGCCCCCTGAGGAAGGGGGCACCGCGAA
GCCGGGGGGTCCGGGGGTTGGGCGCGCGGCGGGGAGGGGCATGCCGCTGG
CGCCCGCTGCGGGGGCCGCGCCCGCGGTGAGCTGGTGTATAGCGTATACA
TGCCTACCTGATTGTACTACATTTATAGGAAAAGCTTTCATGCCACCGTA
GGTAGGTGATGCGGGGAGGGGCATGCCGCTGGCTCCCGCTGCGGGGGCCG
CGGCTGCGGTGACTTTGCTATTTTGAGTATACATGCCTACCCTTCGAATC
AGTCGCCATAGGTAGGTAGGTAGGTATTGGAGGGAGGGGCATGCCGCTGG
CGCCCGCTGCCGGGGCCGCGCCCGCGGTGGGTTGGTGTATAGAGTATACT
GCTTTGAAGTATGTGCCTATTCCTCCCCGTTGAATCCTCCATTAGACGCC
AGGCACGCGGTGGGGGAGGGGCATGCCGCTGGCGCCCGCTGGGGGGGCCG
CACCTGCAGTGAGTTTGCTGTGTTGAGCATGTACTACAATTCTTACATAA
TAGTTGGTGTGGAAACGGATCAAAAGATCGTAGAGCTCTAGGTGACAATA
TACTATGATCAGTCACCATGGGTAGGTACCTACCTGATGAGTCGCCGTAG
GTAGGTATTGGGCATGCCGCTGGCGTCCGCTGCGGCCGTCGCGCCCGCGG
TGACGTGGTGTTTAGACTCTAGAGTATACATGCCTATCTCTCAGCTGTTG
TCACCGCAGGTAGAGCTGTGGAGGGGAGCGCCACCCCGCGATGAAATGGT
GCATAGAGTCTAGGCTCGAGAGTATACACGCCCTCCCTGTCAGGGTTTGC
CACCGTAGGTGGGTATTGTAGAGAGGAGCACGCCGCTGGCGCCCGTGGCG
GCGGGGGCGCGGCAAGCTTGCTGTATAGTATACGCGCCTACCCCTCAGAT
TAGTCACCCATTGTTGCCATAGGTAGGTGCTGCAAAGAGGGGCATGCCGC
TGGCGCCCGCTGCGGCGGTCGCGCCCGTGGCGAGCCTTTGCCTTTATGAG
TTTGAGTCACCGTAGGTAGGCATGTACCTACGTGATGAGTCGCCGTAGGT
AGGTATTGTAGGAAGGGCATGCCGCTGGCGCCCGCTGCGGCGGTCGTGCC
CGCGGTGAGGTTGCTATTCTGAGTAAATATATATATATATACATGCCTAC
CTTTCAATTAGGCAGGGTAGGTAGGTATTGCTTAGAGCATCCATACGTCT
TTACCTCGATCACAAGGTTCACTGTTGAGCATGGGCACGTTGCAAGCAGC
GGCGGCGTTCGCAGTGAGTTGCTGTACGTACCCGCTGATGAATGCGACTT
GCCATGGGTGTGTGCTTCGGGCACACAGACGGCCATCGCAACCAACCAAC
CCCCTTGAAAAAATGCGGGGGGGGGGGGGGGGGGGTGACGTCTGTGCTAG
CACACGCAACGGCTGCGACGTCTGTGCTAGCACACGCAAACCGAAGTGAG
CGAGGTCGTTGTTGAACCAGTGAGCACAGTGGACTGCTTTGGCTCTCGCT
CCAGCGCTATCATGAACGCCCTTACCACGATCCCTCGGCAGCTCATCTCC
GAGCCGCAGGGCACCGTCCTGCTCACAGTCTGAGCCTGGCGAGTACACTG
TCAGTTATATAATCAATTTGCCTCTCGGGTTCAGACTGTGAGCAGGACGA
TGCCTTGCGGCTCGAAGATGAGCTGCCGAGGGATCATGGTAAGGGCGTTC
ATAATCGCGCTGGAGCGAGAGCCAAAGGCTTTGCTGACGATCGTGAGAAG
ACCATTGTGTGACTGTGGAGAGCTGAGTACAGTTGAACTTTGATGTTGAA
CTTGGCGAAGCGGTCTTACCTGTTTACTCAGTGACTCGTGCACGGAACCG
CCCATGTGGGGGGGGGGGCGGGGTAAGGCGACGTCTGCACCAGCACACGA
AGCGGCTCTGAGGTTGAAAGCTGGTTACAGTTGGGCTTTGAAGTTGCGGA
GCGGGCTAGACCTCAAGAGCCGCATTGGCTTCTTTCTCGTGGCACCTCTG
CCTGCGGCATGGGCAGCGCACGCCAACCGTGGCGCAGCTCTCACACTTGT
TGTCACGAGCTGTCACAGTTGAACTTCACAGTTGAAGTTTTCACAGGTTC
GATTTTCAGCCCGAGGCTGCGGCGGCGGGCCTGCTTTTTGGGGGCAATGC
TGCCGCACATTGCACCAGACTTTCAAAAGAACCTATTGACTTGTCTGCTG
GTGCATTGAGGGACAGTCCCCCCGCCTACCGTCGCCAGCGCCGTGCACTG
CTGCGCGCCAGGGAATATACCGACCATACCCTGTGTGAAGTCTAAAAGGA
TCTGCGGCAGACGTCGCAGCGCGGGCCGCGCGTTGATCACTACTTTGTCA
TTCATTTCGCCACTTTGAGTCTAACCCTAACCCTAAGCACTTGCCTAGTC
CTAACCGTAAGCATTCATAAAAGGGGTCAGACGGCGCGCGTCGACTTCAT
TAAATTGTTGAGGTTTGGATTGGCACACGACAACCTGTCAATGTTTCACT
CACAGCGTTGCGTCGTTTGCGCGTCGTGCCTGTGCAGGGCCTTGCTGGAC
CGGTTCGCGGCGTTGGCGGGCCAGCAGCGTCCATCATGCAGGTATGTATG
CTTATGCACACACTTCAGTAAGCAGCTTTACATACACGGCTTACATAGCC
ACTGTACATCTTGCAGCACTTCAGATGTGTTTACAGCGATGGTCACGAGT
CCGTCTCGCCAGCCCCACCGCTCTTATATCGTCCTTGGGCTTAACTAGGG
TTAGGGCAACCCCAGGCCAACCCTAGCCCTAGCAATAGTCGCATCCATCA
TGCCGGTATGTATGCTCATGTACATACATGCGTTGCACGCACGGCATTAC
ATTAGACACTATACTTCTTGCAGTACTAGTCGGCGGGCCAGCAGCGCCCA
TCATGCAGGTATGTATGCTTGCGTATGTACATACATGTGTTGCACACACG
GCATACGTGAGACACTATACTAACTTGCAGTACTAGTTGGCGGGCCTGCA
GCGTCCATCATGCAGGTATGTATGCTTGTGTACATGCATGCACTGCACAC
ACGGCATTCATGAGACGCCATACTTCTTGAAGTACTAGTTGGCGGGCCAG
CATCCATCATGCAGGTATGCATGCCTATGTACATGCTTTACATACCCGGC
TTACATAAACACTACACTATACGTCCTGAAGTACTCCATATGTGTATAAT
TTGAAGTGCACTTCCAATATCTCATGCACATGCTTTCCGCACACATGAGA
CACTACACTTCTTGAAGTGCGCCAGATGTGTACATGGCGAAGTGCCCTTC
TTGTACTTTTTATTAATTCTCGCTCAGGGCGCGAAAAAGCCCAGATGATT
GGCATCTAGCTGTAAGGAATCTACATGTCGTATGACAGTCTGAAAGTGTC
GCAACGACAACCACTCAAACGCCGCCGCCGCCAAATGGCATCTCGGGGTC
CTCCCCTACGTCCTCCTCCATGTGCCCCCCCCCCTGGATTCTGCCATGTG
TGTCATGACACGGCCAGAGTACGTCATGTGGAGCGCTGCCGACAGTGCCG
AGCGTAAGCGCGCCAGGGCGATGCCCTTGAGAGCTTTAGGGCGCGCTCCT
CCGGGCACTGACATCCTGCTGGCATACTCCGTCGCCACAGCCTCCAGCAG
CTTCCGCCCCTGCTCCCCGATGCTGCCAAATGACCCTATTGCCAATGTGG
CAAGTTTGTAGCAATTCTGATCATAATGACCAGAATAGTGCCCTTCTTGT
ACTTCTGCGTACCCCTGAAAAGTTTATCGGCGCTTGTATGCACGCATGCG
TGCATATGCTTGTTCTAGCCCTGACCCTAAGCACATCCCGTGTCACAAGC
GCTGCGCGTTACCCCAACCTTCTCTCGACCCTAACCCTACATGCTTGCAT
ACCCCCTACACACCCCAGACACCCACATATACATACATACAGTAGTCTAT
ATGCATACCCTACCTTGACACAGGACCACATGTAACCACCCCACTGTCCA
CCCCCTTCCCCCGCCCCCCGCAGCCACAAGCCGCTTCCGTCAGTCAGGGC
TTCAGGCCCACCGGACCCCCCCCGGTGGCAGGGGCATGCCCCCCCCGCCC
ATGCAGGGCATGCCCCCCCCCGGCTTCCCCGGCCCAGGGGGCGCTTTTGG
GGGGCCAAGGGGGATGCCGCCGCCAGGTATGCCCCCCCAAGGCATGCCCC
CTGGAGGCCCCCCTGGATTTCCCCCCATGGGCATGCCCCCCCCAGGGGGG
CGGGGGTACCCCCCTAGGCCGCCGATGTAAGGGCGGAGGGATCGGTTCTG
CTAGGAGCGTTGGTAGGAATCGCTGGGGGGGGTGGCGTTTGGGGCGTGAT
TGCTGTGCGCGGCTGTGTCGCTGAGGGGAGGGGGTAAAGGCTCCTTGGAG
GGCTGTGGGAATGATGGGAC
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Coding sequence (CDS) from alignment at Contig_24:423094..429313+

>mRNA_7505 ID=mRNA_7505|Name=jgi.p|Trimin1|47524|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_24:423094..429313+ (Tribonema minus UTEX_B_3156 )
ATGGCGATGGCACGGAGCAGCAAGATGCTGCACTACGTCAACTATCGCAT
GAGGGTCACAATAATGGACAGCCGCGTCCTCATTGGCACCTTCATGGCCT
TTGACCGCCATATGAACATCGTCCTCGGTGACTGCGAGGAACACCGCAAG
ATCAAGTCAAAGAAGGGCCAGGGCGCGCACGCGCACGAGGAGCGGGAGGA
GAAGCGCACGCTGGGTCTCGTGCTCGTGAGAGGAGAGAACGTTGTGTCGC
TGACAGTGGAGGGTCCCCCGCCCCCTGAGGAAGGGGGCACCGCGAAGCCG
GGGGGTCCGGGGGTTGGGCGCGCGGCGGGGAGGGGCATGCCGCTGGCGCC
CGCTGCGGGGGCCGCGCCCGCGGGCCTTGCTGGACCGGTTCGCGGCGTTG
GCGGGCCAGCAGCGTCCATCATGCAGCCACAAGCCGCTTCCGTCAGTCAG
GGCTTCAGGCCCACCGGACCCCCCCCGGTGGCAGGGGCATGCCCCCCCCG
CCCATGCAGGGCATGCCCCCCCCCGGCTTCCCCGGCCCAGGGGGCGCTTT
TGGGGGGCCAAGGGGGATGCCGCCGCCAGGTATGCCCCCCCAAGGCATGC
CCCCTGGAGGCCCCCCTGGATTTCCCCCCATGGGCATGCCCCCCCCAGGG
GGGCGGGGGTACCCCCCTAGGCCGCCGATGTAAGGGCGGAGGGATCGGTT
CTGCTAGGAGCGTTGGTAGGAATCGCTGGGGGGGGTGGCGTTTGGGGCGT
GATTGCTGTGCGCGGCTGTGTCGCTGA
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