mRNA_7502 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|47509
Unique NamemRNA_7502
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A835YZR7_9STRA (Fucoxanthin chl a/c light-harvesting protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR7_9STRA)

HSP 1 Score: 510 bits (1314), Expect = 1.850e-181
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 3 
Query:   33 MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHLI 839
            MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHLI
Sbjct:    1 MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHLI 269
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A835YPP6_9STRA (Fucoxanthin chl a/c light-harvesting protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPP6_9STRA)

HSP 1 Score: 375 bits (962), Expect = 7.980e-128
Identity = 201/263 (76.43%), Postives = 219/263 (83.27%), Query Frame = 3 
Query:   54 VAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMS--DEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIATDAIQAFDYLEYFLHRLHL 836
            +AAA  A A AFVAP ++       +SS+LRM S  +EVMS+SVPFLPRNPVLD  +LAGDVGFDPLNLAKDE TLLFYRDAEVKHARLAMLAALGWVV ELFDGRLA AA APDLLVRPD EGIGLAPSLLNGGL+ IP AYWL+VVGLTGALE QFAAIT  +V QGREPGDYGFDPF LWP++ E QK  R +ELKNGRL MIAIVAFAFQEAVSRVPVVEETPALFGLTP E+  EAEI   A  +F+ +EYFLHRLHL
Sbjct:   10 MAAATIATASAFVAPHTALPVAKATSSSALRMSSIGNEVMSESVPFLPRNPVLDEFELAGDVGFDPLNLAKDEKTLLFYRDAEVKHARLAMLAALGWVVSELFDGRLAAAANAPDLLVRPDGEGIGLAPSLLNGGLATIPAAYWLLVVGLTGALETQFAAITPGVVAQGREPGDYGFDPFNLWPQEKEAQKDLRTKELKNGRLAMIAIVAFAFQEAVSRVPVVEETPALFGLTPNEKIAEAEIGEVAAASFNVIEYFLHRLHL 272
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A1Z5JFF2_FISSO (Light-harvesting complex II chlorophyll a/b binding protein 5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFF2_FISSO)

HSP 1 Score: 180 bits (456), Expect = 1.750e-51
Identity = 99/191 (51.83%), Postives = 125/191 (65.45%), Query Frame = 3 
Query:  165 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            MS+S+PF+ R   LD   LAGDVGFDP   AKD  +L+ YR+AE+KHARLAMLAA GW + ELF+ + A   GAP ++   D      APS+LNGGL  I   YW++ +    A+E    +  K   K    PG+ GFDP GL+P+DPE Q+  +L E+KNGRL MIAI AFAFQE VS++ VVEETP  F
Sbjct:   64 MSESLPFMTRPVALDGT-LAGDVGFDPFGFAKDNASLMKYREAEIKHARLAMLAAAGWPMSELFNTKFASTFGAPSIVDATDR-----APSVLNGGLGKISPVYWVVCLVAAAAIEAYGFSQAK---KADYFPGNLGFDPLGLYPKDPEGQRRLQLNEIKNGRLAMIAITAFAFQEFVSKLGVVEETPFFF 245
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S2PPT6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPT6_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.490e-50
Identity = 105/221 (47.51%), Postives = 139/221 (62.90%), Query Frame = 3 
Query:   90 VAPSSSSLGVAPRASSSLRMMSDEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEV---QFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQ--KLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            +A SSS+L +A    +++  ++   MSQ+VPFL R  VLD VDLAGDVGFDPLNLA   D L+  R+AE+KHARLAMLAA GW + EL D ++A A      L   D       PSLLNGGL  I   +W   VGLT A+++   + A    D +     PGD GFDPFGL+PE+ +E+  K  +L E+K+GR+ M+A+  +A QEAV +  VV+ETP  F
Sbjct:    7 LASSSSTLLLASLIITNVNALAGPQMSQAVPFLARPKVLDQVDLAGDVGFDPLNLAGTVDNLMEMREAEIKHARLAMLAAAGWPISELLDNKIASALNLSSTLDAADR-----VPSLLNGGLDKISPLWWGFCVGLTAAIDLYGQKRARFVADYI-----PGDLGFDPFGLYPEEMDEEGRKRMQLAEVKHGRIAMLAVTGYAIQEAVLKEGVVDETPFFF 217
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S4JV13_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JV13_9STRA)

HSP 1 Score: 173 bits (439), Expect = 6.950e-49
Identity = 101/194 (52.06%), Postives = 126/194 (64.95%), Query Frame = 3 
Query:  165 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGRE---PGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            MSQS+PF+ R   L    +AGDVGFDPL  AK E  L+ YR+AEVKHARLAMLAA GW + E+FD ++A A     L + P  +    APSLLNGGL  +   YW+  +GL  A  V F  I K   K+      PG+ GFDPFG++P+D + Q+  +L E+KNGRL MIAI AFA QEAVS+V VV+ETP  F
Sbjct:   67 MSQSMPFMERPAALTGA-IAGDVGFDPLGFAKSESDLMNYREAEVKHARLAMLAAAGWPLSEVFDRKIATA-----LNLAPAVDANDRAPSLLNGGLGKVSPLYWVACLGLAAA--VDFYGIQKS--KENNPDYFPGNLGFDPFGVYPKDKDGQERMQLAEIKNGRLAMIAIFAFAVQEAVSKVGVVDETPLFF 250
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S1ZQD0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZQD0_TRICV)

HSP 1 Score: 170 bits (430), Expect = 1.400e-47
Identity = 99/194 (51.03%), Postives = 124/194 (63.92%), Query Frame = 3 
Query:  165 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGRE---PGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            MS+S+PF+ R  VL    L GDVGFDP   AK E  L+ YR+AEVKHARLAMLAA GW + E+FD ++A A G   +L   D       PSLLNGGL  I   YW+  + L GA++  F  I +   K G     PG+ GFDPFG++P+D E Q+  +L E+KNGRL MIA+  FA QEAVS+V VV+ETP  F
Sbjct:   63 MSESMPFMARPAVLTG-SLPGDVGFDPFGFAKSESDLMNYREAEVKHARLAMLAAAGWPLSEVFDKKIAGALGMVPMLDANDR-----VPSLLNGGLGKISPLYWVGCIALAGAID--FYGIQRS--KGGNADYFPGNLGFDPFGVYPKDSEGQRWMQLAEIKNGRLAMIAVFGFAIQEAVSKVGVVDETPFFF 246
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A1Z5K7G5_FISSO (Light-harvesting complex I chlorophyll a/b binding protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7G5_FISSO)

HSP 1 Score: 168 bits (425), Expect = 3.300e-47
Identity = 88/192 (45.83%), Postives = 127/192 (66.15%), Query Frame = 3 
Query:  165 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLA-KDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            MS+++PF+ R  +LD   LAGDVGFDP   A  D  TL++ R+AE+KH RLAMLA +GW + ELFD  +A+  G P  L +      G +PS+LNGGL  I +AYW+ V  L G +E++ A + K+   +   PGD GFDP  L+P+   ++K+ + +E+K+GR+ M+AI+ F  QEA+ R+PVV+ETP  F
Sbjct:   47 MSKALPFVKRPKLLDGT-LAGDVGFDPFGFAGNDIPTLVYMREAEIKHCRLAMLAVVGWPIAELFDKPIAETLGLPTALTKS-----GASPSVLNGGLDRIDIAYWVAVAALAGIVELENAKV-KEAKGKKYTPGDCGFDPLNLYPKSDADKKVMQTKEIKHGRVAMMAILGFVAQEALYRIPVVQETPMFF 231
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S3YYW7_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YYW7_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 7.500e-47
Identity = 94/191 (49.21%), Postives = 123/191 (64.40%), Query Frame = 3 
Query:  165 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            MSQ++PFLPR   LD VD+AGD GFDPL LA D++TL+ YR AE+KH RLAMLAA  W ++EL +  LA+  G P L+    +E  G +PS+LNGGL  +   YW  VV LT  +E     +  D      EPGDY FDP GL P+D   ++  +L+E+K+GRL MIAI+ F  QE V +  VV++TP  F
Sbjct:   89 MSQAIPFLPRPENLDLVDMAGDYGFDPLKLAGDKETLVQYRLAEIKHGRLAMLAAAAWPLQELTNPVLAEKLGLPSLV----SETGGRSPSVLNGGLEQVSYTYWTAVVLLTIVIET----LGNDSWGGKIEPGDYRFDPLGLMPKDEAGKRDMKLKEIKHGRLAMIAILGFVVQEFVKKTAVVDQTPMFF 271
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: B7G4U8_PHATC (Protein fucoxanthin chlorophyll a/c protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4U8_PHATC)

HSP 1 Score: 167 bits (423), Expect = 1.340e-46
Identity = 100/192 (52.08%), Postives = 119/192 (61.98%), Query Frame = 3 
Query:  165 MSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGRE-PGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            MSQS+PF+ R   LD   L GDVGFDPL  AK +  L+ YR+AEVKHARLAMLAA GW + ELFD ++A   G   LL   D      APSLLNGGL  +   YW  V  L  A  +    I+K    +    PG+ G DPFGL+P+D   Q+  +L+ELKNGRL MIAI AFAFQE VS+  VV ETP  F
Sbjct:   59 MSQSLPFMERPAALDGT-LVGDVGFDPLGFAKTKADLINYREAEVKHARLAMLAAAGWPLSELFDAKIANWMGMTPLLDANDR-----APSLLNGGLGKVSPVYW--VACLVAAAAIDVYGISKARKNEPDYFPGNLGIDPFGLFPKDAAAQEDMKLKELKNGRLAMIAISAFAFQEFVSKFGVVSETPIFF 242
[Close]
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Match: A0A7S4ABF7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABF7_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.450e-46
Identity = 94/195 (48.21%), Postives = 122/195 (62.56%), Query Frame = 3 
Query:  156 DEVMSQSVPFLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFY-RDAEVKHARLAMLAALGWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWLIVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARLRELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALF 737
            D  MSQ++PF  R  +LD   +AGDVGFDP  LA D+   L Y R+AE+KH+RLAMLAA GW + EL+D ++A A G P LL        G APSLLNGGL  I  AYW+ +V L G +E++   + ++  K     GD  FDP  L P+D E Q     +E+K+GR+ M+AI+ FA QEA+ R PVV ETP  F
Sbjct:   36 DGDMSQALPFAQRPKILDGT-MAGDVGFDPFGLAGDDKAKLMYMREAEIKHSRLAMLAAAGWPISELWDKQIADAVGLPSLLTNA-----GDAPSLLNGGLDKISAAYWVAIVSLAGIIELENMKMKEEKGK-AYIAGDCNFDPLNLLPQDKEGQMQMMTKEIKHGRIAMMAILGFAIQEALYRTPVVAETPFFF 223
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|47509 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZR7_9STRA1.850e-181100.00Fucoxanthin chl a/c light-harvesting protein n=1 T... [more]
A0A835YPP6_9STRA7.980e-12876.43Fucoxanthin chl a/c light-harvesting protein n=2 T... [more]
A0A1Z5JFF2_FISSO1.750e-5151.83Light-harvesting complex II chlorophyll a/b bindin... [more]
A0A7S2PPT6_9STRA3.490e-5047.51Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4JV13_9STRA6.950e-4952.06Hypothetical protein n=4 Tax=Odontella aurita TaxI... [more]
A0A7S1ZQD0_TRICV1.400e-4751.03Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5K7G5_FISSO3.300e-4745.83Light-harvesting complex I chlorophyll a/b binding... [more]
A0A7S3YYW7_9EUKA7.500e-4749.21Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
B7G4U8_PHATC1.340e-4652.08Protein fucoxanthin chlorophyll a/c protein n=2 Ta... [more]
A0A7S4ABF7_9STRA1.450e-4648.21Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:400518..405671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|47509|CE47508_322
Preferred nameLhcr8
DescriptionChlorophyll A-B binding protein
COG categoryP
Max annot lvl2836|Bacillariophyta
EggNOG OGs2BEWM@1|root,2S6HY@2759|Eukaryota,2XCD6@2836|Bacillariophyta
Evalue3.97e-46
Seed ortholog35128.Thaps38306
Hectar predicted targeting categorychloroplast
TranscriptId47831
TrackFilteredModels1
ProteinId47509
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|47509gene_7502Tribonema minus UTEX_B_3156 geneContig_24 400518..405671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|47509Trimin1|47509|CE47508_322Tribonema minus UTEX_B_3156 polypeptideContig_24 400550..405540 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7502_1exon_7502_1Tribonema minus UTEX_B_3156 exonContig_24 400518..400662 +
exon_7502_2exon_7502_2Tribonema minus UTEX_B_3156 exonContig_24 401910..402004 +
exon_7502_3exon_7502_3Tribonema minus UTEX_B_3156 exonContig_24 403007..403345 +
exon_7502_4exon_7502_4Tribonema minus UTEX_B_3156 exonContig_24 404013..404071 +
exon_7502_5exon_7502_5Tribonema minus UTEX_B_3156 exonContig_24 405031..405153 +
exon_7502_6exon_7502_6Tribonema minus UTEX_B_3156 exonContig_24 405460..405671 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7502UTR5_7502Tribonema minus UTEX_B_3156 five_prime_UTRContig_24 400518..400549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7502CDS_7502Tribonema minus UTEX_B_3156 CDSContig_24 400550..400662 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7502UTR3_7502Tribonema minus UTEX_B_3156 three_prime_UTRContig_24 405541..405671 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7502 ID=mRNA_7502|Name=jgi.p|Trimin1|47509|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=973bp|location=Sequence derived from alignment at Contig_24:400518..405671+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TACAGCTGTACGCCACACACACGGAAGCAAGCATGGTTGCCAGGACCCTC
GCCGTCGCCGCTGCCGTGGCAGCGCCCGCCCTCGCCTTCGTGGCGCCTTC
CAGCAGCAGCCTGGGCGTGGCTCCCCGCGCGTCTAGCTCGCTGAGGATGA
TGAGCGATGAAGTGATGTCTCAGTCGGTGCCCTTCCTGCCCCGCAACCCT
GTCCTGGACTCTGTTGACCTGGCTGGCGACGTCGGCTTCGACCCCCTCAA
CCTGGCCAAGGACGAGGACACCCTCCTCTTCTACCGCGACGCGGAGGTCA
AGCATGCGCGCCTCGCGATGCTCGCAGCCCTCGGCTGGGTCGTTGAGGAG
CTCTTTGACGGCCGTCTCGCGCAGGCCGCGGGGGCCCCGGACCTACTGGT
CAGGCCTGACGCCGAGGGTATCGGCCTCGCCCCCTCGCTGCTGAACGGGG
GTCTCTCAAACATCCCCCTCGCGTACTGGCTGATCGTGGTGGGGCTCACC
GGCGCGCTCGAGGTGCAGTTTGCCGCCATCACCAAGGACATTGTGAAGCA
GGGGCGCGAGCCCGGGGACTACGGCTTCGACCCCTTTGGCCTGTGGCCCG
AGGACCCGGAGGAGCAGAAGCTGGCGCGCCTGCGTGAGCTCAAGAACGGC
CGCCTCGGCATGATTGCCATTGTGGCGTTTGCCTTCCAGGAGGCCGTCTC
CCGCGTGCCCGTCGTCGAGGAGACCCCCGCTCTTTTCGGCCTCACCCCTG
GGGAGGAGAAGATTGAGGCTGAGATTGCCACCGACGCCATCCAGGCCTTT
GACTACCTGGAGTACTTCCTGCACCGCCTGCACCTCATCTGAGCGGTGCC
ACAGTTGAAGTTCAGCAGCCAATTTTGAGTTTGACGCTCCTGCTGCGCGA
GAACGAAACCTGGCGTGTACACGCGCTTGCTGAGCGTTGCTGCGGCGGGG
CTCACGGAGCTGCCGACAGGGGG
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protein sequence of jgi.p|Trimin1|47509

>Trimin1|47509|CE47508_322 ID=Trimin1|47509|CE47508_322|Name=jgi.p|Trimin1|47509|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=270bp
MVARTLAVAAAVAAPALAFVAPSSSSLGVAPRASSSLRMMSDEVMSQSVP
FLPRNPVLDSVDLAGDVGFDPLNLAKDEDTLLFYRDAEVKHARLAMLAAL
GWVVEELFDGRLAQAAGAPDLLVRPDAEGIGLAPSLLNGGLSNIPLAYWL
IVVGLTGALEVQFAAITKDIVKQGREPGDYGFDPFGLWPEDPEEQKLARL
RELKNGRLGMIAIVAFAFQEAVSRVPVVEETPALFGLTPGEEKIEAEIAT
DAIQAFDYLEYFLHRLHLI*
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mRNA from alignment at Contig_24:400518..405671+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7502 ID=mRNA_7502|Name=jgi.p|Trimin1|47509|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5154bp|location=Sequence derived from alignment at Contig_24:400518..405671+ (Tribonema minus UTEX_B_3156 )
TACAGCTGTACGCCACACACACGGAAGCAAGCATGGTTGCCAGGACCCTC
GCCGTCGCCGCTGCCGTGGCAGCGCCCGCCCTCGCCTTCGTGGCGCCTTC
CAGCAGCAGCCTGGGCGTGGCTCCCCGCGCGTCTAGCTCGCTGAGGTGGG
TACACATTCGCGCTTAATGACATGTTTTCTGGCTAGCGACAGTAAGCATG
GGCTGAGTGGTGGCTCATGCTATTGTATCTACCATGCACCTCTACTTCCA
CCGCATGATAGCGTGGTGGCGACAGCGTGCGTGCTATCTCTGGTATCTTG
CTTGAATTCTCTGCTGACATACGCGACACCAAAAGTGCTCCACGGCAGCA
CACGCACACTCCAGTGCTGCGCAACTGCCTGTATCGGCTTTGGATACCAT
GGCAATGACAATCGTGCTGCTTTCAGTAGCCTCGGTTCTTGGCCACCCCC
ACTTCACTGGATCTTTTCGTTCACCTAAGCCAAAACCGCTTGTGCCACTG
CTTGCAACCTTGTGTCTACATTCCTTCAATAACACTAATTGCAAACGAAG
TACTAAGCTGGCAACAGCATTGCCTTTGCGCTGGGGCGCATGTCACATCG
CTGACTCAGCGAGTGACGCGTCTCTGCGCTTGCTCGAATTGCCTTCGAGC
TCAGGGACCCTATTTGCGTCTCGCTCTGCTGGTGCATTGTGGTGCGATGC
AGCTAAAGTGCAATGCAACAGTGCTGCAAATGCAGTGGCAAACAACAAGG
GGGTGTTGCTGAGACCACGACAGTTTAGTTCTAGAACCATTTCTACGACA
GCCACTGAATGTCGCAACTTTGGCACATTTTGTTGCACACTTGCACCCTG
CCTCACAACTGTGTACTAGTACTGGTGTTGTCACGCACAAAATTAGAGCG
GCCTGCTCTGGCTGCCCTTGCCAGCTGGTTTTGTTTGCACGTGGGTTTTC
GATTTTTTTCTTTTCTTTCTTGTTCCTGTAGCTTTTTCAACTTACAAAAA
CAAGGAAAGACGCAGGGACTCGTTGCAGCAGTGGGACGTAACATTGATAA
TGAGAATTTAACATGAAGACCTGCTTGCTTATTTATAAACAGCATGATTG
CTTTTTCTTGAGAAACTGTAGTAACACATTGTGGTTTTCCTTGTATGGAT
TGTCTCTGTCACCCTTGATCAGATTACGACTGAACAGTATCCCAACTCCG
AACAGTGGTGTTAACGGTTTCCTTGGCATGGATTTCCTCTTGTCTCACAC
TTTGTGTCACCTCAACATTTGGCTCTTTTCATTCATGAATTCCGACAGCA
CGATGAGCGATGAGGTGATGACGTGAACTCTTGGCTCTTTTCATTCATTG
ATGCTGACTTTTTTGGGCTCTTTTCGTTATGAATTCTGACAGGATGATGA
GCGATGAAGTGATGTCTCAGTCGGTGCCCTTCCTGCCCCGCAACCCTGTC
CTGGACTCTGTTGACCTGGCTGGCGACGTCGGCTTCGGTAAGTCACCCGT
TGAACTTTGATGCACCCATAGCAAAATTCATTGAACTTTGATGCGCCCAT
AGCAAAATTAAGTGTTCTATTTGTCTGGACTAGGAGACTGCACGGGTCTC
GACAGATTTAGCGTTTGAAGTGCCCCCTGCTGCTGATCATTTTCAGATGA
TACCTCTACGTCAGCATTGTATTGCGGTGGGATGAGTCATCTCAATGACC
TGGATGGCGACATCAGCTTTGGTGAGTCACTAGTTGAACTTGGAACGACG
CCCAGACCAGAAGCAACAAGTGCGACCACCGGCAATGGTTTTACTTGACA
GCATCAGCAATTGCAGTATGTCACCTAGATAGTAGATACGTTTGTCTGAC
GTGCAACTCGCAGTGCGCAAAAGTGTTGTCAGTGCTTGTAGTACTGACAG
GAGCTCATGAAGGCTCCATATCCTTATTTCCAACTAGACCTTTGCGCGCG
CGATTTTGCTTGCATACAGTGCATGGGGGCATTGAATGTTAATACAAGGT
GAACCGGTAGGTTTCTCGATTCAAGCCTGATCATGTTGTGCAGGCGGCTA
GGACGCTCCAGCAAGACATAACGATGACATCACAATTATGCATCATGACC
TCAAAGAACCAAACAGCATGAATTTATGCAATACTTTGAAGTACACTTCA
TGAGTGTAGAAACGATTTGTTGATGAAGTTTGCCTTTGCTGACGTAGTGG
TTGGTAGGTCATTTCATTTGTATCCAAGACTTTTCAGCAAGTTGGAGAAA
AACGCCAGGACCAGGCCCCTAATCCTAGGTCCTGTCTGGCAGAGAAATAC
CATGTTTCATGTACCATGGCATCCAATGAACTCCAATGAACCACCCTCTC
TTGTAGGTTCACCCCTTGCGTATGTTTTTCTGACACCCCTCCCACCCCCT
TGTTCCCCTCACTGGAAACAGACCCCCTCAACCACTCCTATATATCTGAC
GTACCCCCCCCCTCTTCCCCCTCCACCGAAAATGAACAGACCCCCTCAAC
CTGGCCAAGGACGAGGACACCCTCCTCTTCTACCGCGACGCGGAGGTCAA
GCATGCGCGCCTCGCGATGCTCGCAGCCCTCGGCTGGGTCGTTGAGGAGC
TCTTTGACGGCCGTCTCGCGCAGGCCGCGGGGGCCCCGGACCTACTGGTC
AGGCCTGACGCCGAGGGTATCGGCCTCGCCCCCTCGCTGCTGAACGGGGG
TCTCTCAAACATCCCCCTCGCGTACTGGCTGATCGTGGTGGGGCTCACCG
GCGCGCTCGAGGTGCAGTTTGCCGCCATCACCAAGGACATTGTGAAGCAG
GGGCGCGAGCCCGGGGACTACGGCTTCGGTGAGCACTGACGCAGTGTCTT
GTACTTCAACTTTGAAGTAAGATGCAGTTTGCGGCCATCACCAAGGAGGC
CGGGGACTGCGACTTCGGTTAGCGCCGATGCAATTTTTTGTACGCCAAAT
TTGAAGTATATGTGTATGTTTATGTAGGTGCGTTCGCTGCCGTCATCAAG
GACAGTGTGAGGCACGGGCGCGAGCCCCGGGACTAGACTACGGCTTCGGT
GAGCGCTGACGCGGTGTTACGTACTTCAAGTTTAAAGTTCATACATGTAC
GTGTAGTTCACGGCAGTCACCAAGAACATAGTGAAGCAGGGGCGAACATC
GTGAAGTAGGGGTGCGAGGCCGGGGTCTACGGCTTCTGTGAGCGCTGACG
TGGTGTCATGTACTTCAAGTTTGAAGTGTAAATGTGTGTGTGTGTGTGTG
CCTGCGCACGTAGCTTATTGATACTCCTCGAGCTGTTGTGCTATTCACAT
TCAAAGTTGCAAGAATGCGTGCATGTTGACACATGGGTGCTGGCTAGATG
GGTTTTTTTGAGGCATGATGTAGGTGTACAGTAGCTTCATGCATCATATT
TTTGCGTTGATATCGCTGCGTGGCGCATTGTCTTCTTGCGCATACACGAC
GTTCCCATGCTGACCGTGCTTTGTCGTTACACTCTGTAACTGCAGACCCC
TTTGGCCTGTGGCCCGAGGACCCGGAGGAGCAGAAGCTGGCGCGCCTGCG
TGAGGTGAGCAGTGTGTTTCACCTCAAACTATAGCCATCGCAACTATTGT
TCGTATCGCAAATACTTAGCCATGCTGTTTTGTCCTCTCTACGCTAGTAA
TCACAACCATTATTAACGTAGTCATGCTCAGCTGTGAGCTGTGAGAAGAT
GGCGCGCCTGCGTGAGGTGAGCAACTTTTTTGAAAGTATTTTCACTGCGC
TACACTCATCACGAGCCCTATCAGCATCGCAATTTCTAGCTACGCTAGTT
GTCGTGAGCACCATCAGCACAGTAATTTTCAGCTGTGCAGCTTTCCCCCA
CAATACTCTCTAGATCACATCCATTGTCAGCAGGCATCCTTAGCTGTGAG
TGAGGTGAGCAGCTCATTCTACTATACTCTCAACCAGTATCAGCAGTGCA
ACACGTAGCTGCGCAAGTCCAATTCTGATGAAACTACAATCCCCTTTTTT
GCCATGCACTAGTGATTCAAATTCATCAGCGTTGAAATTCTTAGCTGTGC
AGCACAAGCCATCACAACCACTATCAGCACCGCAATACTTAGTTGTACAG
CTTATTTGTCACTACGCTGGTCTAGATCACAACCATCATCAGCATGGTTA
CACTCACCTGTGAGCTGTGCGAAGCTGGTGCGCCTCTCGTGAGGTGAGCT
ACTTTTTTCACTGCATTATTCATCACATGCGAGCAGGTGGCCATTGTCGG
GATTGATGTACTTCATAATTGAGAACTATCGTCACCACTGGAGTGTGATC
ACATCACGCGCATGACTCATAGTTGTTGTTGCCGTGTTCTGACACTCGTC
ACCCTTTCCTCCCCTCTTCGCCCGGTTTGAACTCAAGGGTTAGGGTAAGG
GTTAGCGCGACACATGAAGTTGATTAATTGTCTCAACTTCAAAAAACTAG
TTCCAAATAGTGCCATATCCTGACGCTCGCCTCTCTCTGCCGTCCCCTCC
CCTTCCCCTGCAGCTCAAGAACGGCCGCCTCGGCATGATTGCCATTGTGG
CGTTTGCCTTCCAGGAGGCCGTCTCCCGCGTGCCCGTCGTCGAGGAGACC
CCCGCTCTTTTCGGCCTCACCCCTGGGGAGGAGAAGGTATGTATGTATGC
CTAACCCTCACCCTTGCAACCCTTGCAGCGGCAGCATGATGCATGTGTGC
ATACGTGGAAAGAGCACCAGTAGTTGCCAACAGTAACACGCTCGTCTCAC
TTGAAGCATTATGTTGTTGTACACGAACAGCAGTGGAAACTGCACCTGCG
GTTGACAACATGAGCAGTCTGTTTCGAGTCTGCGCAGGATGGTCATCATC
ATGACTTTGAGAAGCAGCGCGTGCGTGTGCTGGACTGCGCTGTGCTGTGC
TGATCAACTGTCCCCCCTCTCCTCCCCCCCCCCCCCCTGCAGATTGAGGC
TGAGATTGCCACCGACGCCATCCAGGCCTTTGACTACCTGGAGTACTTCC
TGCACCGCCTGCACCTCATCTGAGCGGTGCCACAGTTGAAGTTCAGCAGC
CAATTTTGAGTTTGACGCTCCTGCTGCGCGAGAACGAAACCTGGCGTGTA
CACGCGCTTGCTGAGCGTTGCTGCGGCGGGGCTCACGGAGCTGCCGACAG
GGGG
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Coding sequence (CDS) from alignment at Contig_24:400518..405671+

>mRNA_7502 ID=mRNA_7502|Name=jgi.p|Trimin1|47509|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=810bp|location=Sequence derived from alignment at Contig_24:400518..405671+ (Tribonema minus UTEX_B_3156 )
ATGGTTGCCAGGACCCTCGCCGTCGCCGCTGCCGTGGCAGCGCCCGCCCT
CGCCTTCGTGGCGCCTTCCAGCAGCAGCCTGGGCGTGGCTCCCCGCGCGT
CTAGCTCGCTGAGGATGATGAGCGATGAAGTGATGTCTCAGTCGGTGCCC
TTCCTGCCCCGCAACCCTGTCCTGGACTCTGTTGACCTGGCTGGCGACGT
CGGCTTCGACCCCCTCAACCTGGCCAAGGACGAGGACACCCTCCTCTTCT
ACCGCGACGCGGAGGTCAAGCATGCGCGCCTCGCGATGCTCGCAGCCCTC
GGCTGGGTCGTTGAGGAGCTCTTTGACGGCCGTCTCGCGCAGGCCGCGGG
GGCCCCGGACCTACTGGTCAGGCCTGACGCCGAGGGTATCGGCCTCGCCC
CCTCGCTGCTGAACGGGGGTCTCTCAAACATCCCCCTCGCGTACTGGCTG
ATCGTGGTGGGGCTCACCGGCGCGCTCGAGGTGCAGTTTGCCGCCATCAC
CAAGGACATTGTGAAGCAGGGGCGCGAGCCCGGGGACTACGGCTTCGACC
CCTTTGGCCTGTGGCCCGAGGACCCGGAGGAGCAGAAGCTGGCGCGCCTG
CGTGAGCTCAAGAACGGCCGCCTCGGCATGATTGCCATTGTGGCGTTTGC
CTTCCAGGAGGCCGTCTCCCGCGTGCCCGTCGTCGAGGAGACCCCCGCTC
TTTTCGGCCTCACCCCTGGGGAGGAGAAGATTGAGGCTGAGATTGCCACC
GACGCCATCCAGGCCTTTGACTACCTGGAGTACTTCCTGCACCGCCTGCA
CCTCATCTGA
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