mRNA_7483 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136220
Unique NamemRNA_7483
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|136220 vs. uniprot
Match: A0A835YZE4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE4_9STRA)

HSP 1 Score: 288 bits (737), Expect = 1.160e-98
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 
Query:    1 LRHLEKALDESAISAILKQKKNIKHVRPDFFFVIKHNDGRVLGLHIEYDENNDHEDNDDRLKAIHETVSCDGGAFVIRIMGKHGLSGAVCKRRVINKCSLYYDMTDHGHTVANEAAVVIEERLQWIYDGLGPSATRPLKVF 423
            LRHLEKALDESAISAILKQKKNIKHVRPDFFFVIKHNDGRVLGLHIEYDENNDHEDNDDRLKAIHETVSCDGGAFVIRIMGKHGLSGAVCKRRVINKCSLYYDMTDHGHTVANEAAVVIEERLQWIYDGLGPSATRPLKVF
Sbjct:    1 LRHLEKALDESAISAILKQKKNIKHVRPDFFFVIKHNDGRVLGLHIEYDENNDHEDNDDRLKAIHETVSCDGGAFVIRIMGKHGLSGAVCKRRVINKCSLYYDMTDHGHTVANEAAVVIEERLQWIYDGLGPSATRPLKVF 141
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BLAST of jgi.p|Trimin1|136220 vs. uniprot
Match: A0A835Z5Z4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Z4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 6.940e-24
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 LRHLEKALDESAISAILKQKKNIKHVRPDFFFVIKHNDGRVLGLHIEYDENNDHEDNDDRLKAI 192
            LRHLEKALDES  SAIL++KK+++H+R D+FFVI H DGRV GLH+EYDE++DHED+ DRLKAI
Sbjct:   63 LRHLEKALDESVTSAILREKKDVRHIRSDYFFVIMHEDGRVFGLHVEYDEDDDHEDDFDRLKAI 126
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136220 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YZE4_9STRA1.160e-98100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z5Z4_9STRA6.940e-2471.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:234626..235048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136220|gw1.24.40.1
Hectar predicted targeting categoryother localisation
TranscriptId136542
TrackFilteredModels1
ProteinId136220
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136220gene_7483Tribonema minus UTEX_B_3156 geneContig_24 234626..235048 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7483_1exon_7483_1Tribonema minus UTEX_B_3156 exonContig_24 234626..235048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7483CDS_7483Tribonema minus UTEX_B_3156 CDSContig_24 234626..235048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136220Trimin1|136220|gw1.24.40.1Tribonema minus UTEX_B_3156 polypeptideContig_24 234626..235048 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7483 ID=mRNA_7483|Name=jgi.p|Trimin1|136220|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_24:234626..235048+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTACGCCACCTTGAGAAGGCTCTTGATGAGAGCGCCATCTCTGCAATCCT
CAAACAAAAGAAGAACATCAAACATGTTCGACCAGACTTTTTTTTTGTCA
TCAAGCACAATGATGGACGCGTTCTTGGGCTGCACATCGAATATGATGAG
AACAATGACCACGAGGACAATGATGATCGTCTCAAAGCAATCCACGAGAC
GGTTTCATGTGACGGAGGTGCTTTTGTGATTCGTATCATGGGCAAACATG
GATTGAGTGGCGCAGTGTGTAAGCGCAGGGTGATCAACAAATGTAGCTTA
TACTACGACATGACCGATCATGGTCATACAGTGGCTAACGAGGCAGCAGT
GGTGATTGAGGAGCGGCTGCAGTGGATCTATGATGGATTGGGTCCTTCAG
CTACAAGGCCGCTCAAGGTCTTT
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protein sequence of jgi.p|Trimin1|136220

>Trimin1|136220|gw1.24.40.1 ID=Trimin1|136220|gw1.24.40.1|Name=jgi.p|Trimin1|136220|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
LRHLEKALDESAISAILKQKKNIKHVRPDFFFVIKHNDGRVLGLHIEYDE
NNDHEDNDDRLKAIHETVSCDGGAFVIRIMGKHGLSGAVCKRRVINKCSL
YYDMTDHGHTVANEAAVVIEERLQWIYDGLGPSATRPLKVF
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mRNA from alignment at Contig_24:234626..235048+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7483 ID=mRNA_7483|Name=jgi.p|Trimin1|136220|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=423bp|location=Sequence derived from alignment at Contig_24:234626..235048+ (Tribonema minus UTEX_B_3156 )
CTACGCCACCTTGAGAAGGCTCTTGATGAGAGCGCCATCTCTGCAATCCT
CAAACAAAAGAAGAACATCAAACATGTTCGACCAGACTTTTTTTTTGTCA
TCAAGCACAATGATGGACGCGTTCTTGGGCTGCACATCGAATATGATGAG
AACAATGACCACGAGGACAATGATGATCGTCTCAAAGCAATCCACGAGAC
GGTTTCATGTGACGGAGGTGCTTTTGTGATTCGTATCATGGGCAAACATG
GATTGAGTGGCGCAGTGTGTAAGCGCAGGGTGATCAACAAATGTAGCTTA
TACTACGACATGACCGATCATGGTCATACAGTGGCTAACGAGGCAGCAGT
GGTGATTGAGGAGCGGCTGCAGTGGATCTATGATGGATTGGGTCCTTCAG
CTACAAGGCCGCTCAAGGTCTTT
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Coding sequence (CDS) from alignment at Contig_24:234626..235048+

>mRNA_7483 ID=mRNA_7483|Name=jgi.p|Trimin1|136220|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_24:234626..235048+ (Tribonema minus UTEX_B_3156 )
CTACGCCACCTTGAGAAGGCTCTTGATGAGAGCGCCATCTCTGCAATCCT
CAAACAAAAGAAGAACATCAAACATGTTCGACCAGACTTTTTTTTTGTCA
TCAAGCACAATGATGGACGCGTTCTTGGGCTGCACATCGAATATGATGAG
AACAATGACCACGAGGACAATGATGATCGTCTCAAAGCAATCCACGAGAC
GGTTTCATGTGACGGAGGTGCTTTTGTGATTCGTATCATGGGCAAACATG
GATTGAGTGGCGCAGTGTGTAAGCGCAGGGTGATCAACAAATGTAGCTTA
TACTACGACATGACCGATCATGGTCATACAGTGGCTAACGAGGCAGCAGT
GGTGATTGAGGAGCGGCTGCAGTGGATCTATGATGGATTGGGTCCTTCAG
CTACAAGGCCGCTCAAGGTCTTT
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