mRNA_7482 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|135327
Unique NamemRNA_7482
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|135327 vs. uniprot
Match: A0A835Z0A4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0A4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.250e-11
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 RRCIAPGCGKSARAASQHCIGHGGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXEAECCS 177
            RRCIAPGCGKSARAASQHCIGHGGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXEAECCS
Sbjct:    1 RRCIAPGCGKSARAASQHCIGHGGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXEAECCS 59
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|135327 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0A4_9STRA2.250e-11100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:234258..234434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|135327|gw1.24.35.1
Hectar predicted targeting categoryother localisation
TranscriptId135649
TrackFilteredModels1
ProteinId135327
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135327gene_7482Tribonema minus UTEX_B_3156 geneContig_24 234258..234434 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7482_1exon_7482_1Tribonema minus UTEX_B_3156 exonContig_24 234258..234434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7482CDS_7482Tribonema minus UTEX_B_3156 CDSContig_24 234258..234434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|135327Trimin1|135327|gw1.24.35.1Tribonema minus UTEX_B_3156 polypeptideContig_24 234258..234434 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7482 ID=mRNA_7482|Name=jgi.p|Trimin1|135327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_24:234258..234434+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGCGATGCATCGCACCAGGGTGCGGCAAGAGTGCGCGAGCAGCCAGCCA
ACATTGTATTGGACATGGAGGAGGCAAGAGGTGTATCAAATCAGGTTGCG
ATAAGGGTGCTCAAGGAGCTACATTATATTGTGCAGGGCACGGCGGAGGC
AACAGGTGTGAAGCGGAGTGCTGCTCA
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protein sequence of jgi.p|Trimin1|135327

>Trimin1|135327|gw1.24.35.1 ID=Trimin1|135327|gw1.24.35.1|Name=jgi.p|Trimin1|135327|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
RRCIAPGCGKSARAASQHCIGHGGGKRCIKSGCDKGAQGATLYCAGHGGG
NRCEAECCS
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mRNA from alignment at Contig_24:234258..234434+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7482 ID=mRNA_7482|Name=jgi.p|Trimin1|135327|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_24:234258..234434+ (Tribonema minus UTEX_B_3156 )
AGGCGATGCATCGCACCAGGGTGCGGCAAGAGTGCGCGAGCAGCCAGCCA
ACATTGTATTGGACATGGAGGAGGCAAGAGGTGTATCAAATCAGGTTGCG
ATAAGGGTGCTCAAGGAGCTACATTATATTGTGCAGGGCACGGCGGAGGC
AACAGGTGTGAAGCGGAGTGCTGCTCA
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Coding sequence (CDS) from alignment at Contig_24:234258..234434+

>mRNA_7482 ID=mRNA_7482|Name=jgi.p|Trimin1|135327|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_24:234258..234434+ (Tribonema minus UTEX_B_3156 )
AGGCGATGCATCGCACCAGGGTGCGGCAAGAGTGCGCGAGCAGCCAGCCA
ACATTGTATTGGACATGGAGGAGGCAAGAGGTGTATCAAATCAGGTTGCG
ATAAGGGTGCTCAAGGAGCTACATTATATTGTGCAGGGCACGGCGGAGGC
AACAGGTGTGAAGCGGAGTGCTGCTCA
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