mRNA_7449 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348815
Unique NamemRNA_7449
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A835Z5I9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I9_9STRA)

HSP 1 Score: 736 bits (1899), Expect = 4.250e-265
Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 1
Query:    1 MREIATVDVSPEEIAAFFEQPSYEAAQAGGKHLPGATATLLESNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            MREIATVDVSPEEIAAFFEQPSYEAAQAGGKHLPGATATLLESNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE
Sbjct:    1 MREIATVDVSPEEIAAFFEQPSYEAAQAGGKHLPGATATLLESNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 404          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A6H5JCE6_9PHAE (2OG-FeII_Oxy_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE6_9PHAE)

HSP 1 Score: 486 bits (1252), Expect = 3.860e-166
Identity = 241/402 (59.95%), Postives = 280/402 (69.65%), Query Frame = 1
Query:   10 IATVDVSPEEIAAFFEQPSYEAAQAGGKHLPGATATLLESNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEG-GRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            + TVDVSPEE+A FF +P++EA  A     P  +     S+P H+ V+D FL    A++LRGVF +RFSKPREG+ ERFVWDWWHVP+QYTLMRTPAE YFGPE                                             GF  L  AL  FGQE+LGC AISPPWLSVY+DGCEQR+HTD+WHGPWAFVLSLTDW+ + FTGGET ILKPHVL+YW SF PGIGLEEKHF+DT+EPHFNRLT+FDPRFPHGV+PV GT+DP KGRLV+HGWFTDPQP+F+GGLS EEATE LN A+E   PAL   EG GRVTG LTVRLHVSG  G+V +V ALTDTL+ DP D+  DEEG   DARA+ +  +      A FP  A+GEDT ITVP+ FE
Sbjct:   96 LGTVDVSPEEVAEFFAKPTFEAVDASQAQ-PAPSVDTQGSSPEHVLVMDSFLAGETASRLRGVFHDRFSKPREGSPERFVWDWWHVPDQYTLMRTPAENYFGPE---------------------------------------------GFTELLKALTNFGQERLGCTAISPPWLSVYVDGCEQRYHTDSWHGPWAFVLSLTDWENRGFTGGETMILKPHVLDYWRSFQPGIGLEEKHFIDTVEPHFNRLTVFDPRFPHGVRPVGGTKDPLKGRLVIHGWFTDPQPFFTGGLSAEEATEPLNDALETVYPAL---EGVGRVTGVLTVRLHVSGETGAVVSVVALTDTLIPDPNDVGVDEEGVEEDARADVLEAVDRGCREARFP--AAGEDTHITVPFVFE 446          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: D8LG16_ECTSI (2OG-FeII_Oxy_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG16_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 9.410e-154
Identity = 220/355 (61.97%), Postives = 252/355 (70.99%), Query Frame = 1
Query:  151 LDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEG-GRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            +D FL+   A++LRGVF +RFSKPREG+ ERFVWDWWHVP+QYTLMRTPAE YFG E                                             GF  L   L KFGQE+LGC AISPPWLSVY+DGCEQR+HTD+WHGPWAFVLSLTDW+ + FTGGET ILKPHVL+YW SF PG+GLEEKHF+DT+EPHFNRLT+FDPRFPHGV+PV GT+DP KGRLV+HGWFTDPQP+F+GGLS EEATE LN A+EA  PAL   EG GRVTG LTVRLHVSG  G V +V ALTDTL+ DP D+  DEEG   DARA+ +  +      A FP  A+GEDT ITVP+ FE
Sbjct:    1 MDSFLEGETASRLRGVFHDRFSKPREGSPERFVWDWWHVPDQYTLMRTPAENYFGRE---------------------------------------------GFTELLDTLTKFGQERLGCTAISPPWLSVYVDGCEQRYHTDSWHGPWAFVLSLTDWENRGFTGGETMILKPHVLDYWRSFQPGVGLEEKHFIDTVEPHFNRLTVFDPRFPHGVRPVGGTKDPLKGRLVIHGWFTDPQPFFTGGLSAEEATEPLNDALEAVYPAL---EGVGRVTGVLTVRLHVSGETGGVVSVVALTDTLIPDPNDVGIDEEGVEEDARADVLDAVDRGCREARFP--AAGEDTHITVPFVFE 305          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: L1IYM7_GUITC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IYM7_GUITC)

HSP 1 Score: 339 bits (869), Expect = 6.880e-110
Identity = 176/371 (47.44%), Postives = 226/371 (60.92%), Query Frame = 1
Query:  106 ATATLLESNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTD-PQPYF-SGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            AT  L +S PRH+ + D FL    A  LRG FDE F +PR    +RFVWD+WHVP QYTL+RT AE+YF                                                 +E LT+AL  FGQ+ LGC +I+ PWLS Y+DGCEQR HTD+WHGP+A+VLSLT+W+ ++FTGGET +++   L+YW +F P +GLEE   + T+EPHFNRLTLFDPR PHGV+ VRGT+DPRK RLVLHGWFTD   P++ +GG+SEE ATE LN A++    +LA  +  RV G L VRL V GA G V  +S++ DT+VADP DL   E   P + RA  +  I   L    F   + G+D+ IT+P+ FE
Sbjct:   17 ATPALTKSLPRHLVIQDNFLAPDLAESLRGTFDENFLEPRSTNIKRFVWDYWHVPSQYTLIRTSAEDYFDAAQ---------------------------------------------YERLTSALTDFGQKHLGCNSITKPWLSYYVDGCEQRMHTDSWHGPFAYVLSLTNWEEREFTGGETFLMESLALDYWRNFDPKVGLEEDKLMSTVEPHFNRLTLFDPRIPHGVRAVRGTKDPRKSRLVLHGWFTDLGTPFYEAGGISEESATEVLNEALQPLYDSLAN-KCSRVIGVLNVRLDVDGATGRVTKLSSVADTMVADPLDLI--EGNTPEEVRASVLKEIERHLKDLQF--DSKGQDSSITLPFIFE 337          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A1Y1I053_KLENI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I053_KLENI)

HSP 1 Score: 316 bits (809), Expect = 1.040e-100
Identity = 173/392 (44.13%), Postives = 224/392 (57.14%), Query Frame = 1
Query:   37 EIAAFFEQPSYEAAQAGGKHLPGATATLLESNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            E AA   +P+ E A   G    G        +P H+ + D FL    A +LR  FD RF++PR+   +RFVWD+WHVP QYTL+RTPAE++F P                                               +E+L  AL  +G+ +LGCR+ISP WLS Y+DGC Q  H D  HGPWAFVLSLTDW+ + F+GGET IL+PHVL+YW  F    G+E +  +  +EP FNRLT+FDPR PHGV+PVRGT+DPR+ RLVLHGWFT+P P+F+G L E EA  +LN A+E     +A       TGT TVRL +SG+ G+V  +  LTDTL+  P     DE G     R +    I   LGGA FP S  G DT++T+P+ F+
Sbjct:   14 ETAASVAEPTTEEATVSGDD-QGEEDVGSGGDPEHLIIEDEFLDS--AEELREHFDSRFAEPRQIRMDRFVWDYWHVPNQYTLIRTPAEDFF-PRTL--------------------------------------------YESLEDALLSYGENKLGCRSISPVWLSYYVDGCSQELHADNPHGPWAFVLSLTDWERRRFSGGETMILQPHVLDYWRGFEARRGMELEDLVTQVEPDFNRLTVFDPRLPHGVRPVRGTQDPREARLVLHGWFTEPTPFFTGALEEHEAVASLNAALEPLFEEVATFSPS--TGTTTVRLTISGSTGAVTDLEWLTDTLIEVP---GGDEPGA---VRDQVQRTIVRHLGGATFPTSDKG-DTYLTMPFVFD 348          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A835TCS7_9CHLO (Fe2OG dioxygenase domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835TCS7_9CHLO)

HSP 1 Score: 315 bits (807), Expect = 5.660e-100
Identity = 171/379 (45.12%), Postives = 218/379 (57.52%), Query Frame = 1
Query:  127 SNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLT---DWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAML----------IIH----EALGGADFPCSASGEDTFITVPYAFE 1212
            ++ +H+  +DGFL   QAA+LRGVFD RF+ PR    ERF+WD+WHVP+QYTL+RT A  YF  +                                              +  L  AL  +G+  LGCRAISP W+S Y+DGC Q  H D  HGP+AFVLSLT   DW  ++F+GGET IL+PHVLNYW ++ P  G+E +H +  +   FNRLT+FDPRFPHGV+ VRGT+DPRKGRLVLHGWFT+P P+F G L   EA  ALN  +E    AL A  G  +TGTL  RL++SGADGSV  +S L DTLV  P    +D       A A+A+L          ++H    + L G  FP + +G DT +T P  FE
Sbjct:   56 TSAQHVITVDGFLPAAQAAELRGVFDSRFADPRACHPERFLWDYWHVPDQYTLVRTQAAVYFPDDL---------------------------------------------YGRLEEALLSYGEAALGCRAISPIWMSYYVDGCLQELHCDNPHGPFAFVLSLTPTTDWSDREFSGGETLILQPHVLNYWRNYDPRKGMELQHLVTRVPSPFNRLTVFDPRFPHGVREVRGTKDPRKGRLVLHGWFTEPAPFFDGPLDAGEAEVALNEGLEPLWEALEAVSG-LITGTLIARLNISGADGSVTELSWLADTLVEVPN---HDR------AAADALLEERVLPRLRALVHNEARDCLLGLSFPAAGAGRDTKLTFPIVFE 379          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A2K3DWT5_CHLRE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DWT5_CHLRE)

HSP 1 Score: 317 bits (812), Expect = 2.950e-99
Identity = 172/376 (45.74%), Postives = 215/376 (57.18%), Query Frame = 1
Query:  136 RHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLT---DWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPTDLAYDEEGDPIDARAEAML----------IIH----EALGGADFPCSASGEDTFITVPYAFE 1212
            +H+  +D FL  PQAA+LRGVFD RF+ PR    ERF+WD+WHVP+QYTL+RT A  YF  E                                              +  L  AL  +G+  LGCRAISP W+S Y+DGC Q  H D  HGP+AFVLSLT   DW  ++F GGET IL+PHVLNYW ++ P  G+E +H +  +   FNRLT+FDPRFPHGV+ VRGTRDPRKGRLVLHGWFT+P P+F G L   +A  ALN  +E    AL A  G  +TGTL  R+++SGADGSV  +S L DTLV  P    +D       A A+AML          ++H    + L G  FP + +G DT +T P  FE
Sbjct:  169 QHVITVDNFLPAPQAAELRGVFDSRFADPRACHPERFLWDYWHVPDQYTLVRTQAAVYFPDEL---------------------------------------------YGRLEEALLSYGEAALGCRAISPIWMSYYVDGCLQELHCDNPHGPFAFVLSLTPTTDWSQREFVGGETMILQPHVLNYWRNYDPRKGMELQHLVTRVPSPFNRLTVFDPRFPHGVREVRGTRDPRKGRLVLHGWFTEPAPFFDGPLEAADAEVALNEGLEPLWEALEAVSG-LITGTLIARVNISGADGSVTDLSWLADTLVEVPN---HDR------AAADAMLEERVLPRLRALVHNEVRDCLMGLSFPAAGAGRDTKLTFPIVFE 489          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A835YAF1_9CHLO (Fe2OG dioxygenase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YAF1_9CHLO)

HSP 1 Score: 314 bits (805), Expect = 1.520e-98
Identity = 176/365 (48.22%), Postives = 211/365 (57.81%), Query Frame = 1
Query:  136 RHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLT-DWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPT-DLAYDE---EGDPIDA-RAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            +H+ V DGFL    A  LRGVFD RF+ PR    ERFVWD+WHVP+QYTL+RT A  YF  E                                              +  L  AL  +G+ QLGCRAISP W+S Y+DGC Q  H D  HGP+AFVLSLT DWD ++F GGET ILKP VLNYW SF P  GLE +H +  +   FNRLT+FDPRFPHGV+ V GTRDPRKGRLVLHGWFT+P P+FSG L   EA  AL+  +E    AL A  G  V+GTL  R+ +SGA G+V  ++ L DTLV  P  D A  E   EG  +   RA     + E L G  FP + SGED+ +T+P  FE
Sbjct:  145 QHVIVRDGFLTPQLAGALRGVFDGRFADPRATHPERFVWDYWHVPDQYTLIRTQAAVYFPDEL---------------------------------------------YAQLEDALLSYGETQLGCRAISPIWMSYYVDGCGQELHCDNPHGPFAFVLSLTMDWDKREFVGGETMILKPEVLNYWRSFDPRKGLELQHLVTRVPSPFNRLTVFDPRFPHGVRQVHGTRDPRKGRLVLHGWFTEPAPFFSGPLDPAEAAAALSEGLEPLWAALEAVSG-LVSGTLISRVTISGATGAVTDLTWLADTLVEVPNHDRAAAEALLEGRVLPRLRALVQGEVKECLMGLTFPAAESGEDSHLTLPLVFE 463          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A150H3Q2_GONPE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3Q2_GONPE)

HSP 1 Score: 308 bits (790), Expect = 1.500e-97
Identity = 172/368 (46.74%), Postives = 213/368 (57.88%), Query Frame = 1
Query:  127 SNPRHIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLT-DWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPT-DLAYDE---EGDPIDA-RAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            S  +HI V DGFL    A  LRGVFD RF+ PR    ERF+WD+WHVP+QYTL+RT A+ YF PE                                              +  L AAL  +G+ QLGCR+ISP W+S Y+DGC Q  H D  HGP+AFVLSLT DW+ ++F+GGET IL+PHVLNYW ++ P  GLE +H +  +   FNRLT+FDPRFPHGV+ V GTRDPRKGRLVLHGWFT+P P+F G L   +A   L   ++    AL A  G  VTGTL  R+ +SGADGSV  VS L DTLV  P  D A  E   EG  +   RA     + + L    FP + +G D+ +T+P  FE
Sbjct:   49 SAAQHIIVRDGFLPDADARALRGVFDGRFADPRVIRPERFLWDYWHVPDQYTLVRTQAQVYF-PEDL--------------------------------------------YNMLEAALLSYGESQLGCRSISPIWMSYYVDGCVQELHCDNPHGPFAFVLSLTTDWEHREFSGGETMILQPHVLNYWRNYDPRKGLELQHLVTRVPAPFNRLTVFDPRFPHGVRQVHGTRDPRKGRLVLHGWFTEPAPFFDGPLDPADAEAVLAEGLQPLYEALDAVSG-LVTGTLIARVTISGADGSVSGVSWLADTLVEVPNHDRAAAEALLEGRVLPRLRALVQNEMRDCLTAITFPTAPAGGDSVLTLPIVFE 370          
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Match: A0A8J4AM92_9CHLO (Fe2OG dioxygenase domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4AM92_9CHLO)

HSP 1 Score: 312 bits (800), Expect = 1.580e-97
Identity = 175/366 (47.81%), Postives = 211/366 (57.65%), Query Frame = 1
Query:  139 HIHVLDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPAEEYFGPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWAFVLSLT-DWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPHFNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEEATEALNRAMEASGPALAAAEG--GRVTGTLTVRLHVSGADGSVRAVSALTDTLVADPT-DLAYDE---EGDPIDA-RAEAMLIIHEALGGADFPCSASGEDTFITVPYAFE 1212
            HI V DGFL +  A  LRGVFDERF+ PR    ERF+WD+WHVP+QYTL+RT A+ YF  E                                              ++ L  AL  +G+ QLGCRAISP W+S Y+DGC Q  H D  HGP+AFVLSLT DWD ++FTGGET IL+P VLNYW S+ P  GLE +  +  +   FNRLT+FDPRFPHGV+ V GTRDPRK RLVLHGWFT+P P+F G L   +A EALN  +    P   A EG  G +TGTL VR+H+SG  GSV  +  L DTLV  P  D A  E   EG  +   RA     +H+ L    FP   SGED+ +T P  FE
Sbjct:  167 HIIVNDGFLSEADARALRGVFDERFADPRVIHPERFLWDYWHVPDQYTLVRTQAQVYFPEEL---------------------------------------------YQRLEDALLTYGESQLGCRAISPIWMSYYVDGCVQELHCDNPHGPFAFVLSLTQDWDQREFTGGETMILQPGVLNYWRSYEPRKGLEMQQLVTRVPAPFNRLTVFDPRFPHGVRQVHGTRDPRKSRLVLHGWFTEPAPFFQGPLDPADAEEALNGGLA---PLWDALEGISGLITGTLIVRVHISGRSGSVTDLQWLADTLVEVPNHDRAAAEALLEGRVLPRLRALVHNEVHDCLTAIIFPTVPSGEDSVLTYPIIFE 484          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348815 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5I9_9STRA4.250e-265100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JCE6_9PHAE3.860e-16659.952OG-FeII_Oxy_3 domain-containing protein n=1 Tax=E... [more]
D8LG16_ECTSI9.410e-15461.972OG-FeII_Oxy_3 domain-containing protein n=1 Tax=E... [more]
L1IYM7_GUITC6.880e-11047.44Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A1Y1I053_KLENI1.040e-10044.13Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A835TCS7_9CHLO5.660e-10045.12Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A2K3DWT5_CHLRE2.950e-9945.74Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A835YAF1_9CHLO1.520e-9848.22Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A150H3Q2_GONPE1.500e-9746.74Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A8J4AM92_9CHLO1.580e-9747.81Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:973429..980363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348815|estExt_Genemark1.C_Ctg_310113
Max annot lvl2759|Eukaryota
EggNOG OGs28MKF@1|root,2QU44@2759|Eukaryota
Evalue2.02e-156
Seed ortholog2880.D8LG16
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOxoglutarate/iron-dependent dioxygenase
Ec32 orthologEc-21_004960.1
TranscriptId349137
TrackFilteredModels1
ProteinId348815
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348815gene_7449Tribonema minus UTEX_B_3156 geneContig_31 973429..980363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7449_13exon_7449_13Tribonema minus UTEX_B_3156 exonContig_31 973429..973806 -
exon_7449_12exon_7449_12Tribonema minus UTEX_B_3156 exonContig_31 974211..974278 -
exon_7449_11exon_7449_11Tribonema minus UTEX_B_3156 exonContig_31 975043..975178 -
exon_7449_10exon_7449_10Tribonema minus UTEX_B_3156 exonContig_31 975907..976037 -
exon_7449_9exon_7449_9Tribonema minus UTEX_B_3156 exonContig_31 977011..977115 -
exon_7449_8exon_7449_8Tribonema minus UTEX_B_3156 exonContig_31 977737..977811 -
exon_7449_7exon_7449_7Tribonema minus UTEX_B_3156 exonContig_31 978327..978527 -
exon_7449_6exon_7449_6Tribonema minus UTEX_B_3156 exonContig_31 979051..979095 -
exon_7449_5exon_7449_5Tribonema minus UTEX_B_3156 exonContig_31 979167..979211 -
exon_7449_4exon_7449_4Tribonema minus UTEX_B_3156 exonContig_31 979283..979327 -
exon_7449_3exon_7449_3Tribonema minus UTEX_B_3156 exonContig_31 979399..979582 -
exon_7449_2exon_7449_2Tribonema minus UTEX_B_3156 exonContig_31 980077..980207 -
exon_7449_1exon_7449_1Tribonema minus UTEX_B_3156 exonContig_31 980358..980363 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7449UTR3_7449Tribonema minus UTEX_B_3156 three_prime_UTRContig_31 973429..973763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7449CDS_7449Tribonema minus UTEX_B_3156 CDSContig_31 980358..980363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348815Trimin1|348815|estExt_Genemark1.C_Ctg_310113Tribonema minus UTEX_B_3156 polypeptideContig_31 973764..980363 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7449 ID=mRNA_7449|Name=jgi.p|Trimin1|348815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1550bp|location=Sequence derived from alignment at Contig_31:973429..980363- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGAGATTGCTACTGTGGATGTAAGTCCCGAGGAGATTGCAGCTTT
CTTCGAGCAGCCCAGCTATGAGGCGGCTCAAGCTGGTGGCAAGCATTTGC
CTGGGGCCACTGCTACACTGCTGGAGAGCAACCCGAGGCACATACACGTT
CTGGACGGTTTCCTGCAGCAGCCGCAGGCGGCGCAGCTGCGGGGGGTGTT
TGACGAGAGATTCAGCAAGCCGCGCGAGGGCACCGCAGAACGCTTTGTGT
GGGACTGGTGGCACGTGCCGGAGCAGTACACGCTCATGCGCACGCCCGCG
GAGGAGTACTTTGGGCCTGAGTACACGCTCATGCGCACGCCCGCGGAGGA
GTACTTTGGGCCTGAGTACACGCTCATGCGCACGCCCGCGGAGGAGTACT
TTGGGCCTGAGTACACGCTCATGCGCACGCCCGCGGAGGAGTACTTTGGG
CCTGAGGGATTCGAGGCACTGACGGCGGCGCTGTGCAAATTCGGCCAGGA
GCAGCTGGGGTGCCGCGCTATCTCGCCTCCGTGGCTGAGCGTCTACATTG
ACGGCTGTGAGCAGCGCTTCCACACGGACGCGTGGCACGGGCCCTGGGCG
TTTGTGCTGTCGCTCACGGACTGGGATGGCAAAGATTTCACAGGAGGGGA
GACGCAGATCTTGAAGCCCCACGTGCTCAACTACTGGAACAGCTTTGCCC
CTGGCATTGGGCTCGAGGAGAAGCATTTCCTGGACACGATCGAGCCTCAC
TTCAACAGGCTGACACTGTTTGACCCGCGCTTTCCGCATGGCGTCAAGCC
AGTGAGGGGCACCAGAGACCCCAGGAAGGGGAGGTTGGTGCTTCACGGCT
GGTTCACCGACCCGCAGCCCTACTTCTCCGGCGGCCTCTCTGAGGAGGAG
GCTACGGAGGCCCTCAACAGAGCCATGGAGGCCTCAGGGCCAGCGCTGGC
TGCAGCTGAAGGGGGCAGGGTCACGGGCACGCTGACGGTGCGGCTGCACG
TGAGCGGCGCGGACGGCAGCGTGCGCGCCGTGTCAGCGCTCACCGACACG
CTCGTGGCGGACCCCACGGACCTGGCGTACGACGAGGAGGGGGACCCCAT
CGACGCGCGCGCGGAGGCGATGCTCATAATCCACGAGGCACTGGGAGGCG
CAGACTTCCCGTGCTCAGCCAGTGGCGAGGACACTTTCATCACGGTGCCC
TACGCGTTTGAATGATCGCAGCCTGCGATTGGCTGCCTGGAAGGCGCTGA
TTGGATCAGGCTGTCACATAGTCAGTGCTCATCTGATGCTGCGCCAGCCA
AGTTTTGCCACAAGGCAAACTCCATCACATCTCGTGGTTGAATTGGGGTG
CGTGTCCGCATGAGCTGGGAGGCTCGCACGGTGCGTGCACCTAGCACTTG
CTTGATGACATTGGGCAACATCGCTAGTGCGTCCTCAAGACATGCGCCAC
ACGGAGCACGCACCTAATACACAGCACTGCTTGGCACGGCTATCGCTGTG
GCACTGTGTGATGCCCGATCTCTGGTGCCATCTCCAGCAGTCTTATATCC
back to top

protein sequence of jgi.p|Trimin1|348815

>Trimin1|348815|estExt_Genemark1.C_Ctg_310113 ID=Trimin1|348815|estExt_Genemark1.C_Ctg_310113|Name=jgi.p|Trimin1|348815|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=405bp
MREIATVDVSPEEIAAFFEQPSYEAAQAGGKHLPGATATLLESNPRHIHV
LDGFLQQPQAAQLRGVFDERFSKPREGTAERFVWDWWHVPEQYTLMRTPA
EEYFGPEYTLMRTPAEEYFGPEYTLMRTPAEEYFGPEYTLMRTPAEEYFG
PEGFEALTAALCKFGQEQLGCRAISPPWLSVYIDGCEQRFHTDAWHGPWA
FVLSLTDWDGKDFTGGETQILKPHVLNYWNSFAPGIGLEEKHFLDTIEPH
FNRLTLFDPRFPHGVKPVRGTRDPRKGRLVLHGWFTDPQPYFSGGLSEEE
ATEALNRAMEASGPALAAAEGGRVTGTLTVRLHVSGADGSVRAVSALTDT
LVADPTDLAYDEEGDPIDARAEAMLIIHEALGGADFPCSASGEDTFITVP
YAFE*
back to top

mRNA from alignment at Contig_31:973429..980363-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7449 ID=mRNA_7449|Name=jgi.p|Trimin1|348815|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6935bp|location=Sequence derived from alignment at Contig_31:973429..980363- (Tribonema minus UTEX_B_3156 )
ATGCGTGTATGGACAAGTCCAAGAGCATGCGATGCGGTCCTTCAGTGCGG ACACAAGCTGGCGAGTGAAATGCTCTCAACATGAAACAGGCCGCTGTTGC ACAATGCTCAAGCCACTTGCCTTCTCTGAGCACCCCCCCCCCATCCGTCC TGGCAGGAGATTGCTACTGTGGATGTAAGTCCCGAGGAGATTGCAGCTTT CTTCGAGCAGCCCAGCTATGAGGCGGCTCAAGCTGGTGGCAAGCATTTGC CTGGGGCCACTGCTACACTGCTGGAGAGCAACCCGAGGTGACCCACAATT TGTCATAAGCACCATGGATATAGCAATGGCACTGTCCATGTGGCTGCGTA GCAATGAAGTGGAAATCTCACTCTCTGCAGTGCGTGGTCATGACCTTGGC TTGGGCCGGAAATTATTGGAGGCGATTTGCCGCAACTGATTGCTGCCACC GAGCTGTATGCATGGCGGCTTTCCGACATGCACCTGCTAAAAGATACCAG ACGAGCTTCACAACCTCCAGCACTTGTTGTGCTTCATCAGTTGTGACCTG CTGTTGATGCACTCAACGAGCACTTCAGAGCCAGATGATAACTGACCAGC CCATGACGGATGACAACTGATCAGCCCTTGAGAGTTGCCACGAATTTGGT AGCTAACAGGAATCGACGAGCCACTATTTGGCCTGGAACTTCGAAACAGG TTCGCACAACTTGCGTCACAGCTAGACTACAACTCCAAACTCACCACACC CTTCCATTTGACCTCTTGCTGGCGGGAGCAGGCACATACACGTTCTGGAC GGTTTCCTGCAGCAGCCGCAGGCGGCGCAGCTGCGGGGGGTGTTTGACGA GAGATTCAGCAAGCCGCGCGAGGGCACCGCAGAACGCTTTGTGTGGGACT GGTGGCACGTGCCGGAGCAGTACACGCTCATGCGCACGCCCGCGGAGGAG TACTTTGGGCCTGAGGTGGGCAATGTACACGTACTTGATTGATGTGGGGT ATGTAGGCATACTTCTTGAAGTATGTGCCGGAGCAGTACACGCTCATGCG CACGCCCGCGGAGGAGTACTTTGGGCCTGAGGTGGGCAATGTACACGTAC TTGATTGATGTGGGGTATGTAGGTATACTTCTTGAAGTATGTGCCGGAGC AGTACACGCTCATGCGCACGCCCGCGGAGGAGTACTTTGGGCCTGAGGTG GGCAATGTACACGTACTTGATTGATGTGGGGTATGTAGGTATACTTCTTG AAGTATGTGCCGGAGCAGTACACGCTCATGCGCACGCCCGCGGAGGAGTA CTTTGGGCCTGAGGTGGGTATGTAGGTATGTAGCCTTATGTGGGCATGTA GGTACATGTATGTAGACAGGCGGGGGTATGGGTGCTACTGCGAGCACTTG ACCGAAGTGGAAGTGCGCGCACGCTTACGATGGGTAGGCCATCTCAGCGC AGACAACAACGGAAGGCGCGCAGGCACCTGCGAACGGCGAACATACTGCC TCGTGCAGTCTGATTGGTACACGGTTCAAGCGCTCTGCACGTGCCCAGGA CGTGCACGATGAGCACTGCCACCCTGCAGCTGTTGTTGACGCGCTGTAGA CACTGGGGCCGAGCAGTCGCTGGTCTCACAGATGATGCAGTCGATGCGCG CCCATTGTGGCTGGTACGGTTGCAGACAGCACCGCAACCTCTTCCTGCTC GACAAACAGGGATTGCCAAGCACTCTTGAGTGGGGGGCAGAGTGTACAGC AGCGCGCACTCCGTTTGCACTGGAGGCTGTCACACAGTTTGCTTGTGCAG ATACTACAGCTGACATCTTTGAATCACTTGTTGCAGGGATTCGAGGCACT GACGGCGGCGCTGTGCAAATTCGGCCAGGAGCAGCTGGGGTGCCGCGCTA TCTCGCCTCCGTGGCTGAGCGTCTACATTGACGGCTGTGAGCAGCGCTTC CACACGGACGCGTGGCACGGGCCCTGGGCGTTTGTGCTGTCGCTCACGGA CTGGGATGGCAAAGATTTCACAGGAGGGGAGACGCAGGTAATTAGAACTT CACATTTGAAGTTCAAAAATTGAGATTTCACACCTGAGTGCTCTTGGAGT GTGTGATCTGTGGTCATTCAAAGATGGCTACATCTTGGTACTGTGTATAT TGCTGGTGTGTGCACATGTGCGCAAGATGGACGGGCCCTCTACTAGAGGA AGCACGCAGGGGCAAGTCACTGGCTGTCAGTCTCCCGCGCCCGTGTTACA AGGCCGCAGAACAGCTGAGTAATGCTCAGCAGACAGTTACGCAAAAACAG GGCAGTTTACCGAAGTACCCTTCAAGAAGCGGCTAGCTGTTTCACGCAAC TTAACTGCATAGCCTACATTGAAGTTGTGGCCGCTGCAGCACATACTTCT ATGGGAGCATTCCAGAGCGCCCCCTTCCGTGGACGACTGGTATCATCATG ATTTCTGTTCATGCATGGCTTGTATCATGATGTCTGTCCATGCATGGCTT GCTGAGCAATGTGCTCACCCGCTCGCTCTCTGAAACGCACCCTGCTGCGC AGATCTTGAAGCCCCACGTGCTCAACTACTGGAACAGCTTTGCCCCTGGC ATTGGGCTCGAGGAGAAGCATTTCCTGGTAAGTCTAAATCAAACTCTGAC GAGGCAGTAGGGCATCACAGTGCACTGTTCTACGCTTGTGTGTGCGCGCC GCTTTCTCATTGGTGCCAGTCACTATTTATATGCTTCTGGGCAGTCAGCC GCGTTGCCAGGGTGCCACTGCATCCTGCTGCCTGGTACATGGGAGCACAA CGCAATGGTGCTGATCCCTGGCCGGCTCGCAACGCGTACGGCGATTTTAT TGTGCACACCATCTACGGTACATGCGAAGTATGTGCTAGCAGTTACTTAT GCTCTGACATACATGTGAGTTTTTTTGCTTTTTGGCTTGATTCACAGATG CAGGCAGACCTGCGGCAGCTTCCTGTTCATTGCATTGACAGTGGATGTGT ATACCTTCCCCCTGCTGCTGCGCAGTGTTCGTGAGCGGATGTATGCGATG CATTACTCACGCAAATCAGCAAAAATGCATGCAGAACAGCGGTGTCGTTG ACACGCTGTTTAAAATGAAGCCCCTCGCTGCAGACGGCTTGTTGGTCATT GATTGTAGGGTGTCATGCCTGCAAAAACCTTTTGAAAAACCTTCATCGAG GATTGCCAGCTGAACACTTCCTGTGTGCTGTGCGCTGCATTCCTTCAGGA CACGATCGAGCCTCACTTCAACAGGCTGACACTGTTTGACCCGCGCTTTC CGCATGGCGTCAAGCCAGTGAGGGGCACCAGAGACCCCAGGAAGGGGAGG TTGGTGAGCTCAATGACAAGGCATCTGTGATGATTTGGCAGCACAGTGAA GGCACATTTACATTCATTGTGGCAGGTGCAGGCTGAGAGCAAGCCTCAAA CTGCGCGATTTCCACTTCCTTGCAGCCACATGCATGCACAATGTGCTGTT GATCATTACTATAGTGGAGTGCGGGTTCATTTTTGGCAAATGCGTACAGA CTCAAATGATAGTCTACATGGCTGTTCTGAGTGACCGCACAGTGGCAATG TGCTTTGATTTGCTCAGTTCACCTTATGAAACCTTCAAGTTTCAACACAA TACCTTTCCAGCCTTGTTGTGCACTCATGGGAGACGCCTGCAGGGGTCAG CGTTACTTGAGCTGAAAGCTGAATGAAGGTTGTCTATGTGCGGCAAAAGT GCAGAAGTTGCATCGCGTCATAATCAATTGTGATCACCGCTTGCTAGATG TACTGTTGCGCAGCTGAGCAAGTCAAGTCAGTGTGCGGCTGTTGCTATGT TGTGTCTGTCGGCAGCGGCGATGGGCACCAGCTTGTGTCTGCGCATCAAC GCAGATCCTGGCCAGATCACTACTAACATGCACATGCGCACGTACACTAC AACACACACGCACGTCATTCGGTGACCACCGCTTGAGACGAGCACGCAGT TCCGACGGCGCCATTGAAGGTGCAGTTGACGTGCCCCAGCGCCTGCTGCG CACTTGCGCCCAGCCGCTTCTCCAACGCTCAGTGCTTGTGGCTTGACAGC AGTGTAGTCTCCCCGCCAATGATGACTTACTGGGCAACCTCAACACCGCT CACAGTAAGCAACACAATGTCTACTCCCTCTGGCTCTACTCTAATTCTTT GACGTCCACAATTCCGACCCCTGTGTGCACCACGTGTTGTGTAGGTGCTC CGCGGTTGGCTCACCCAAGTACTTTGAAGTCCACAATTCCGACCCTTGTG TGCGCGTGTCGTGTCCTGATGCGCAGGTGCTTCACGGCTGGTTCACCGAC CCGCAGCCCTACTTCTCCGGCGGCCTCTCTGAGGAGGAGGCTACGGAGGC CCTCAACAGAGCCATGGAGGCCTCAGGGCCAGCGCTGGCTGCAGCTGAAG GGGGCAGGTATGTACCAGCACGTAGCCAGAAGTGGCATCACTACAAGTTA GAGTTGACGTGCAGCGCGCTGATCTGCATAAAGCTGGTCCAGAGGTCCAG GGTTACGGCCATGGAGCTCTCTGCCTGCACTGCCTACTGCTGAGCTGTCC AACTGCCACTTCTACCATGCAGTGGTTTGTACAAGTTTTCTATGCTCGTC ATGCAGGTTTGTCAAACATGGGGTTTGAAGGATCATGCCACGGTCCCAAT GTGCCCACCCCCCCCCCCGCCCCCCTCGCCCTGTACCTGAGCGCTGCTGC CTTGCCAGCAGCGCAGCCGGCAGCTTTCCCGCGGTGCACTCTCTTTCCGC GATGGAGTGCGCTCTATATCTCATGTGCTGCAGGCTGATCTTAAAAGCAT GCACACCCACCTTGCGCCTCCCCTCGATCGCCGCCGCCTTGCTGCCAACC CAGCAGCAGACGCGCGCTGGCGCTTCCTGCTCAAGTGGTGACGTGCCTGT GCCGGAAGATCCGACGGGCGCCGTCGCGCCTGCGCGCACTTCAACAGTGT GACGCAGCACGTGCACTCATGAAATCATTGCACTCATTCAGCCAGACAGC CACATCTGCTCACAACACCGTGCACACCATCGACGTTGCCGCGCGCGCCT TGCGCCTACACCGACGCCGCCGCCTACCGTGTCTACGAACGACGCTGTTG CTGATCGCTGCTGCCTCGCTGCGCCGCGGCGACAGGGTCACGGGCACGCT GACGGTGCGGCTGCACGTGAGCGGCGCGGACGGCAGCGTGCGCGCCGTGT CAGCGCTCACCGACACGCTCGTGGCGGACCCCACGGACCTGGCGTACGAC GAGGAGGGGGACCCCATCGACGTAAGCGGCAACTATTGCGGGCAGCGTGT CGCGCGTTCGCAAGCGGGGGAGGGGGGGGGAGGGCCAGAGTGGTGTGCAG GCCCTGGCGAGCGCACCGCATGCACAGCTTCTGGCTTCATGAAGTGATGT TTTGCGGAAGGAGCAGCACTCACCTGTGCAAGCGCAAGGATGGCCCTGCG CGTAACCAGCCTTGATCAGCACATACACGTTTCTGAGACATGTTGCGCGT GTCCTGTATGCGGGGGTCATGCGGCTTCTGACTCGGAGTGTTTGATCGAA CTGCCAACTGTGCGATGGTCATGTCGACTCACATCGCAGTCATAGCCATC GGCCGCAGCGGCACAGCGCCCTTTATACGCCTGCACTGCATCGTAGGCGA GCTGCATTGTCACGATGGCAGGCCCATGTGCTCCTCTGTCGAAAGCGCTC GTTACATGCGCCACTGACGGCGTGCTCAGTGCTCAAGAGCGCCGCTTGAT GTAGATGAAATTGGTTGCCCACACTGTGAAGACTCTCTGCACACCGCCTG AGCGCTTATGTATTCACAACCGCAGGCCACCGCAACGGCCACTGGGCGCA GTGGAACTGTGCTGCATTCTGCGCGACGGTCACCTACACCAAGTGCGGAC CATGAATGCACATTGCACATGCCACTCGCCAGACAATCCACTGGGAAGTG CAACTGGGCACTCTAAACAGACAGAAATAATCTTTCCGGAGTCGCTGTTG AGGGCGTGCAAAACTGCGCGCGCGTGTATTTGCAGGCGCGCGCGGAGGCG ATGCTCATAATCCACGAGGCACTGGGAGGCGCAGACTTCCCGTGCTCAGC CAGGTGCGCCATCTGCAATTGGGCTCAAGTAGAGTGGTCTGCGATGGGTG CTGTGACTTAGTGCTTGCACCACTGAGCAGTGCGCTATTTGCAGTTTCTG CAGTATATGCTGAGTCTGGCAGCTGCCATGATCAGAGCACTACAGTCATG TCATTGTCGCAGTCTCTCTGTGTGTGTGCTGCACCAGGCACGCAGGTTGT TGCGCTTGCAAAAGGCCAGCATTGGCGACCAACTTCCTGTGCCGCTTTTC AGAGCATGGTGTTTTCACATTTGGCGTGCATCTGCGTGTTGTGCTTCATT TTTGCATGCCGCACTGCATCAGTGCTGCCAGGGGCTACTGTATGCATCTG ATGGAAACAACGACCCCTGTCTGTCTTGCTCTCCGCGACATCCCCCCGCG TGTGCAGTGGCGAGGACACTTTCATCACGGTGCCCTACGCGTTTGAATGA TCGCAGCCTGCGATTGGCTGCCTGGAAGGCGCTGATTGGATCAGGCTGTC ACATAGTCAGTGCTCATCTGATGCTGCGCCAGCCAAGTTTTGCCACAAGG CAAACTCCATCACATCTCGTGGTTGAATTGGGGTGCGTGTCCGCATGAGC TGGGAGGCTCGCACGGTGCGTGCACCTAGCACTTGCTTGATGACATTGGG CAACATCGCTAGTGCGTCCTCAAGACATGCGCCACACGGAGCACGCACCT AATACACAGCACTGCTTGGCACGGCTATCGCTGTGGCACTGTGTGATGCC CGATCTCTGGTGCCATCTCCAGCAGTCTTATATCC
back to top

Coding sequence (CDS) from alignment at Contig_31:973429..980363-

>mRNA_7449 ID=mRNA_7449|Name=jgi.p|Trimin1|348815|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1215bp|location=Sequence derived from alignment at Contig_31:973429..980363- (Tribonema minus UTEX_B_3156 )
ATGCGTGAGATTGCTACTGTGGATGTAAGTCCCGAGGAGATTGCAGCTTT
CTTCGAGCAGCCCAGCTATGAGGCGGCTCAAGCTGGTGGCAAGCATTTGC
CTGGGGCCACTGCTACACTGCTGGAGAGCAACCCGAGGCACATACACGTT
CTGGACGGTTTCCTGCAGCAGCCGCAGGCGGCGCAGCTGCGGGGGGTGTT
TGACGAGAGATTCAGCAAGCCGCGCGAGGGCACCGCAGAACGCTTTGTGT
GGGACTGGTGGCACGTGCCGGAGCAGTACACGCTCATGCGCACGCCCGCG
GAGGAGTACTTTGGGCCTGAGTACACGCTCATGCGCACGCCCGCGGAGGA
GTACTTTGGGCCTGAGTACACGCTCATGCGCACGCCCGCGGAGGAGTACT
TTGGGCCTGAGTACACGCTCATGCGCACGCCCGCGGAGGAGTACTTTGGG
CCTGAGGGATTCGAGGCACTGACGGCGGCGCTGTGCAAATTCGGCCAGGA
GCAGCTGGGGTGCCGCGCTATCTCGCCTCCGTGGCTGAGCGTCTACATTG
ACGGCTGTGAGCAGCGCTTCCACACGGACGCGTGGCACGGGCCCTGGGCG
TTTGTGCTGTCGCTCACGGACTGGGATGGCAAAGATTTCACAGGAGGGGA
GACGCAGATCTTGAAGCCCCACGTGCTCAACTACTGGAACAGCTTTGCCC
CTGGCATTGGGCTCGAGGAGAAGCATTTCCTGGACACGATCGAGCCTCAC
TTCAACAGGCTGACACTGTTTGACCCGCGCTTTCCGCATGGCGTCAAGCC
AGTGAGGGGCACCAGAGACCCCAGGAAGGGGAGGTTGGTGCTTCACGGCT
GGTTCACCGACCCGCAGCCCTACTTCTCCGGCGGCCTCTCTGAGGAGGAG
GCTACGGAGGCCCTCAACAGAGCCATGGAGGCCTCAGGGCCAGCGCTGGC
TGCAGCTGAAGGGGGCAGGGTCACGGGCACGCTGACGGTGCGGCTGCACG
TGAGCGGCGCGGACGGCAGCGTGCGCGCCGTGTCAGCGCTCACCGACACG
CTCGTGGCGGACCCCACGGACCTGGCGTACGACGAGGAGGGGGACCCCAT
CGACGCGCGCGCGGAGGCGATGCTCATAATCCACGAGGCACTGGGAGGCG
CAGACTTCCCGTGCTCAGCCAGTGGCGAGGACACTTTCATCACGGTGCCC
TACGCGTTTGAATGA
back to top