mRNA_7431 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835YWC3_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC3_9STRA) HSP 1 Score: 528 bits (1359), Expect = 1.040e-189 Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1 Query: 1 MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 765 MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM Sbjct: 1 MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 255
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835Z413_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z413_9STRA) HSP 1 Score: 187 bits (476), Expect = 5.080e-51 Identity = 101/244 (41.39%), Postives = 143/244 (58.61%), Query Frame = 1 Query: 40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKY-TATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEY-MLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 765 W+ DE I T++ F+PPP CP VYN + GF V + A D L HVLPF+ +I+CN Y++ LA Q PG KT A+ LG+EGVGK+ + I ++G + + DL++ FGRFS N ++ +E+ P ++ +Y++LMDLIT+ S+ E KGI FN + R I T+N L+RIR DRK+Q+IS S+AR ND +F L I+KR GV+RA YD+ M Sbjct: 371 WMMDEDIRTFDYLDFLPPPLTCPSNVYNCYYGFAVARLPAAAPTDVEDLHGHVLPFMHDIMCNGNDAVYQYVLKDLANRVQQPGKKTTVALSFLGDEGVGKNFVVNYIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGELKGIQGRFNYTSCARYIFTSNHMERLVRIRPTDRKYQFISFSDARINDVAFFNTLGAILKRDGVRRALYDFFM 614
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835Z558_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z558_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.370e-50 Identity = 98/244 (40.16%), Postives = 143/244 (58.61%), Query Frame = 1 Query: 40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYT-ATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKS-KFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 765 W+ D+ I TY+ F+PPP CP VYN + G V + A D L HVLPF+++I+C+ + Y + LA + PG KT A+ LG+EGVGK+ TH+ +LG + + DL++ FGRFS N ++ +E+ P ++ +Y++LMDLIT+ + E KG+ FN I+T+N LLRIR DRK+Q++S +AR ND +F KL I+KR GV+RA YD+LM Sbjct: 371 WMKDQNIRTYDYLDFLPPPLHCPSNVYNCFYGLAVARLPPAAPTDVEDLHAHVLPFLRDIVCDANEAVYRYALKDLANRVKQPGKKTNVALSFLGDEGVGKNFTVTHIYIALLGQSMCAKAADLEHSLFGRFSCPGRNLLLVCLDEIRPAEMARYYDQLMDLITADRGQGEIKGMQGRFNYMSCAFYILTSNHMERLLRIRPSDRKYQFVSFLDARINDVAFFNKLGAILKRDGVRRALYDFLM 614
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835YXX0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX0_9STRA) HSP 1 Score: 125 bits (313), Expect = 4.770e-32 Identity = 65/173 (37.57%), Postives = 98/173 (56.65%), Query Frame = 1 Query: 40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKY-TATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKS-KFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQK 552 W+ DE + TY+ F+PPP +CP VYN + G V + A D L HVLPF+++I+CN Y+ LA Q PG KT A+ LG+EGVGK+ H+ ++G + + DL++ FGRFS N ++ +E+ P ++ +Y++LMDLIT+ S+ E K Sbjct: 5 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 177
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A250XQS3_9CHLO (DUF5906 domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQS3_9CHLO) HSP 1 Score: 103 bits (258), Expect = 1.310e-21 Identity = 61/197 (30.96%), Postives = 98/197 (49.75%), Query Frame = 1 Query: 40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLR 630 W+ D K+ + PPP V+N W+ F V +DN + F+ +++ + P Y+++W AQ+ Q PG KT A++L GE+GVGK+ FT+ + ++G +T FGRF+N+ E R++ E A + D+IT CE KG +++ +S R I TTN HN++R Sbjct: 478 WMRDNKLRRFLDISLAPPPKTTTPEVFNLWTPFNVAMVDDNLDDNAYVKAFQ-EFVTKLLGRD-APVIKYVLDWCAQMVQQPGKKTGIALILKGEQGVGKNVFTNALRAVVGADKFLQTATPATTLFGRFTNLREGRILIVINESNGMDNFAASETIKDMITCDEFICEGKGT-NSYPVSCCARFIFTTNL-HNIMR 670
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A4R5H0C8_9ALTE (Integrase n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5H0C8_9ALTE) HSP 1 Score: 97.4 bits (241), Expect = 1.260e-19 Identity = 67/228 (29.39%), Postives = 109/228 (47.81%), Query Frame = 1 Query: 70 EACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFY 753 + F P +CP+TVYN + GF + + E + I EI+CNN Q AA Y++ WLA L Q P K AIV+ EG GK F I+ + G H + GRF++ N+++ F +E++ V + +KL LI+ E+KGI ++ ++ R I +N E ++R +++R++ + S D YF +L + G + Y Sbjct: 93 DGISFYPNVKKCPNTVYNLYQGFAISPMEGSVEP-------YIRHISEILCNNDQRAADYVLGWLAHLVQKPHDKPSVAIVMKSVEGTGKGTFFEPIKQIFGT--HAVHVNGAYQLTGRFNSAVANKMVVFGDEVDLTDVRSA-DKLKGLISEPILSLEKKGID-PISVPNYARFIFASNHEQ-VIRAGNRERRYLVLEPSAVYAQDRAYFEQLWAWVNDNGPAKLLY 308
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A2Z6SJJ6_9GLOM (DUF5906 domain-containing protein n=4 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6SJJ6_9GLOM) HSP 1 Score: 88.2 bits (217), Expect = 3.520e-16 Identity = 65/218 (29.82%), Postives = 105/218 (48.17%), Query Frame = 1 Query: 121 NSWSGFLVEKYTATE--EDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIE-YMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKV--NAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDY 759 N + GFL + T+ + H + I+++ C+ Y+I W A + G K + + L +G GK T I+ Y+LG L Y+T+D + G F+ +V+ EE+ +K N+ Y L D +TS + +K +F+ I+ TN N LR+ + DR+ ++ S AR+ D +YF +L D +K PGV AFY Y Sbjct: 134 NIFPGFLHQLRPLTDFSANIHQAVKIIFTHIRDVWCSGDWNVTEYIIKWFAGMAT--GRKMYSILYLKSGQGWGKGIITDFIQRYVLGTQLVYKTSDPET-ILGSFNGQLLGKVLLLLEEMPTEKSQWNSLYRALKDKVTSDTIEIHEK-YKTPTQYKNFMSTIVLTN--ENALRVENDDRRTVFLDISPARKGDLQYFKRLGDAMKYPGVGEAFYAY 345
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A2I1HP98_9GLOM (DUF5906 domain-containing protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1HP98_9GLOM) HSP 1 Score: 86.7 bits (213), Expect = 1.240e-15 Identity = 68/221 (30.77%), Postives = 106/221 (47.96%), Query Frame = 1 Query: 121 NSWSGFL--VEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEY-MLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKV--NAFYNKLMDL--ITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYL 762 N + GFL + + E H + I++I C+ Y+I WLA + G K + + L +G GK T I+ +LG L Y+T+D Q G F+ + +V+ EE+ +K N+ Y L D +TS +K + +F+ I+ TN N LR+ + DR+ ++ S +R+ D EYF KL + +K PGV AFY YL Sbjct: 106 NIFPGFLHDLRPISTFESVIHQAVKFIFSHIRDIWCSGDWNLTEYIIKWLAGISA--GRKMYSILYLKSGQGWGKGIITDFIQRSVLGTQLVYKTSDHQT-ILGHFNGQLQGKVLLLLEEMPTEKSQWNSLYRSLKDKDKVTSDIMEIHEK-YKTPTHYKNFMSTIVLTN--ENALRVENDDRRTVFLDVSPSRKGDLEYFKKLGNAMKYPGVGEAFYAYL 320
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: D5BU03_PUNMI (DUF5906 domain-containing protein n=2 Tax=Candidatus Puniceispirillum TaxID=767891 RepID=D5BU03_PUNMI) HSP 1 Score: 84.7 bits (208), Expect = 5.330e-15 Identity = 64/238 (26.89%), Postives = 111/238 (46.64%), Query Frame = 1 Query: 40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFY 753 WLN + L+Y+ F P + + YN + GF V+ A + D L H I++ IC + Y+++W+A Q PG + A+ + G++GVGK F ++ + G H + G F+ ++++ F +E L L+T + E KGI + +++R+I+ +N E ++ + R+F I AS AR DA YFG + + I+ G + Y Sbjct: 361 WLNHPERLSYDGVTF--DPTKKSNGYYNLYQGFPVK---AVKGDCGLYLEH----IRQNICLGDEDLYEYVLDWMADAIQNPGKRPGVALAIRGKQGVGKGVFVNVFASLFGP--HAIQVTQSSHLVGNFNAHLRDKLLVFADEAFWAGDKRAEGVLKGLVTEDNIAIEMKGID-VQSSPNYVRLILASNNEW-IIPASADQRRFVVIEASEARMQDASYFGSIINQIENGGREALMY 585
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A4Q3Y6A7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4Q3Y6A7_9PROT) HSP 1 Score: 83.2 bits (204), Expect = 1.860e-14 Identity = 68/245 (27.76%), Postives = 112/245 (45.71%), Query Frame = 1 Query: 40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAE----YFGKLSDIIKRPGVQRAFYDYL 762 W + Y++ F+P N + N W GF VE DN + + I++ I + ++ Y++NWLA Q+ RTA+VL+G +G GKS + L Y+ G H+ TT D G+F+ E + EE LI S R E+K G + I + LR+++T+N EH ++R DR++ S ++ D + YFG+L + ++ G + + L Sbjct: 462 WFETARRREYDSVIFLPGGNAGLRNL-NLWRGFAVEP-----ADNPAGWSKLKDHIRDNIAGGDEQSSTYIMNWLAFAVQHLDQPVRTALVLIGAKGTGKSILSVLFGYIFGD--HHYTTAHPQDVLGKFNAHLEYVMTLGLEEAVAPDGRVNDGVFKHLINSDVLRLEEKFAG-VWKIPNHLRIMLTSNNEH-VVRADGHDRRYAVFSVTHPHVGDPDARRRYFGELVEQMESGGYEAMLGELL 696 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7431 ID=mRNA_7431|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_31:788595..789362- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGGGCAAGCAAGGGCAAAGATGATGAGGAGACTTTCTGGCTCAATGAback to top protein sequence of jgi.p|Trimin1|164356 >Trimin1|164356|e_gw1.31.151.1 ID=Trimin1|164356|e_gw1.31.151.1|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKback to top mRNA from alignment at Contig_31:788595..789362- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7431 ID=mRNA_7431|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_31:788595..789362- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_31:788595..789362- >mRNA_7431 ID=mRNA_7431|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_31:788595..789362- (Tribonema minus UTEX_B_3156 )back to top |