mRNA_7431 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164356
Unique NamemRNA_7431
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835YWC3_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWC3_9STRA)

HSP 1 Score: 528 bits (1359), Expect = 1.040e-189
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1
Query:    1 MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 765
            MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM
Sbjct:    1 MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 255          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835Z413_9STRA (DUF5906 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z413_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.080e-51
Identity = 101/244 (41.39%), Postives = 143/244 (58.61%), Query Frame = 1
Query:   40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKY-TATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEY-MLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 765
            W+ DE I T++   F+PPP  CP  VYN + GF V +   A   D   L  HVLPF+ +I+CN       Y++  LA   Q PG KT  A+  LG+EGVGK+   + I   ++G  +  +  DL++  FGRFS    N ++   +E+ P ++  +Y++LMDLIT+  S+ E KGI   FN +   R I T+N    L+RIR  DRK+Q+IS S+AR ND  +F  L  I+KR GV+RA YD+ M
Sbjct:  371 WMMDEDIRTFDYLDFLPPPLTCPSNVYNCYYGFAVARLPAAAPTDVEDLHGHVLPFMHDIMCNGNDAVYQYVLKDLANRVQQPGKKTTVALSFLGDEGVGKNFVVNYIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGELKGIQGRFNYTSCARYIFTSNHMERLVRIRPTDRKYQFISFSDARINDVAFFNTLGAILKRDGVRRALYDFFM 614          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835Z558_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z558_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.370e-50
Identity = 98/244 (40.16%), Postives = 143/244 (58.61%), Query Frame = 1
Query:   40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYT-ATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKS-KFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYLM 765
            W+ D+ I TY+   F+PPP  CP  VYN + G  V +   A   D   L  HVLPF+++I+C+  +    Y +  LA   + PG KT  A+  LG+EGVGK+   TH+   +LG  +  +  DL++  FGRFS    N ++   +E+ P ++  +Y++LMDLIT+   + E KG+   FN       I+T+N    LLRIR  DRK+Q++S  +AR ND  +F KL  I+KR GV+RA YD+LM
Sbjct:  371 WMKDQNIRTYDYLDFLPPPLHCPSNVYNCFYGLAVARLPPAAPTDVEDLHAHVLPFLRDIVCDANEAVYRYALKDLANRVKQPGKKTNVALSFLGDEGVGKNFTVTHIYIALLGQSMCAKAADLEHSLFGRFSCPGRNLLLVCLDEIRPAEMARYYDQLMDLITADRGQGEIKGMQGRFNYMSCAFYILTSNHMERLLRIRPSDRKYQFVSFLDARINDVAFFNKLGAILKRDGVRRALYDFLM 614          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A835YXX0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.770e-32
Identity = 65/173 (37.57%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKY-TATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKS-KFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQK 552
            W+ DE + TY+   F+PPP +CP  VYN + G  V +   A   D   L  HVLPF+++I+CN       Y+   LA   Q PG KT  A+  LG+EGVGK+    H+   ++G  +  +  DL++  FGRFS    N ++   +E+ P ++  +Y++LMDLIT+  S+ E K
Sbjct:    5 WMMDEDVRTYDCLDFLPPPLQCPSNVYNCYYGLAVARLPAAAPTDVEDLHGHVLPFMRDIMCNGNDAVYQYVQKDLANRVQQPGKKTNVALSFLGDEGVGKNFVVNHIYVPLMGKSMCSKAADLEHSLFGRFSCPGRNNLLVCLDEIRPAEMARYYDQLMDLITAEMSQGEIK 177          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A250XQS3_9CHLO (DUF5906 domain-containing protein (Fragment) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQS3_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 1.310e-21
Identity = 61/197 (30.96%), Postives = 98/197 (49.75%), Query Frame = 1
Query:   40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLR 630
            W+ D K+  +      PPP      V+N W+ F V       +DN  +      F+ +++  +  P   Y+++W AQ+ Q PG KT  A++L GE+GVGK+ FT+ +  ++G     +T       FGRF+N+ E R++    E       A    + D+IT     CE KG  +++ +S   R I TTN  HN++R
Sbjct:  478 WMRDNKLRRFLDISLAPPPKTTTPEVFNLWTPFNVAMVDDNLDDNAYVKAFQ-EFVTKLLGRD-APVIKYVLDWCAQMVQQPGKKTGIALILKGEQGVGKNVFTNALRAVVGADKFLQTATPATTLFGRFTNLREGRILIVINESNGMDNFAASETIKDMITCDEFICEGKGT-NSYPVSCCARFIFTTNL-HNIMR 670          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A4R5H0C8_9ALTE (Integrase n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5H0C8_9ALTE)

HSP 1 Score: 97.4 bits (241), Expect = 1.260e-19
Identity = 67/228 (29.39%), Postives = 109/228 (47.81%), Query Frame = 1
Query:   70 EACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFY 753
            +   F P   +CP+TVYN + GF +     + E         +  I EI+CNN Q AA Y++ WLA L Q P  K   AIV+   EG GK  F   I+ + G   H    +      GRF++   N+++ F +E++   V +  +KL  LI+      E+KGI    ++ ++ R I  +N E  ++R  +++R++  +  S     D  YF +L   +   G  +  Y
Sbjct:   93 DGISFYPNVKKCPNTVYNLYQGFAISPMEGSVEP-------YIRHISEILCNNDQRAADYVLGWLAHLVQKPHDKPSVAIVMKSVEGTGKGTFFEPIKQIFGT--HAVHVNGAYQLTGRFNSAVANKMVVFGDEVDLTDVRSA-DKLKGLISEPILSLEKKGID-PISVPNYARFIFASNHEQ-VIRAGNRERRYLVLEPSAVYAQDRAYFEQLWAWVNDNGPAKLLY 308          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A2Z6SJJ6_9GLOM (DUF5906 domain-containing protein n=4 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6SJJ6_9GLOM)

HSP 1 Score: 88.2 bits (217), Expect = 3.520e-16
Identity = 65/218 (29.82%), Postives = 105/218 (48.17%), Query Frame = 1
Query:  121 NSWSGFLVEKYTATE--EDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIE-YMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKV--NAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDY 759
            N + GFL +    T+   + H     +   I+++ C+       Y+I W A +    G K  + + L   +G GK   T  I+ Y+LG  L Y+T+D +    G F+     +V+   EE+  +K   N+ Y  L D +TS +    +K         +F+  I+ TN   N LR+ + DR+  ++  S AR+ D +YF +L D +K PGV  AFY Y
Sbjct:  134 NIFPGFLHQLRPLTDFSANIHQAVKIIFTHIRDVWCSGDWNVTEYIIKWFAGMAT--GRKMYSILYLKSGQGWGKGIITDFIQRYVLGTQLVYKTSDPET-ILGSFNGQLLGKVLLLLEEMPTEKSQWNSLYRALKDKVTSDTIEIHEK-YKTPTQYKNFMSTIVLTN--ENALRVENDDRRTVFLDISPARKGDLQYFKRLGDAMKYPGVGEAFYAY 345          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A2I1HP98_9GLOM (DUF5906 domain-containing protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2I1HP98_9GLOM)

HSP 1 Score: 86.7 bits (213), Expect = 1.240e-15
Identity = 68/221 (30.77%), Postives = 106/221 (47.96%), Query Frame = 1
Query:  121 NSWSGFL--VEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEY-MLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKV--NAFYNKLMDL--ITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFYDYL 762
            N + GFL  +   +  E   H     +   I++I C+       Y+I WLA +    G K  + + L   +G GK   T  I+  +LG  L Y+T+D Q    G F+   + +V+   EE+  +K   N+ Y  L D   +TS      +K      +  +F+  I+ TN   N LR+ + DR+  ++  S +R+ D EYF KL + +K PGV  AFY YL
Sbjct:  106 NIFPGFLHDLRPISTFESVIHQAVKFIFSHIRDIWCSGDWNLTEYIIKWLAGISA--GRKMYSILYLKSGQGWGKGIITDFIQRSVLGTQLVYKTSDHQT-ILGHFNGQLQGKVLLLLEEMPTEKSQWNSLYRSLKDKDKVTSDIMEIHEK-YKTPTHYKNFMSTIVLTN--ENALRVENDDRRTVFLDVSPSRKGDLEYFKKLGNAMKYPGVGEAFYAYL 320          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: D5BU03_PUNMI (DUF5906 domain-containing protein n=2 Tax=Candidatus Puniceispirillum TaxID=767891 RepID=D5BU03_PUNMI)

HSP 1 Score: 84.7 bits (208), Expect = 5.330e-15
Identity = 64/238 (26.89%), Postives = 111/238 (46.64%), Query Frame = 1
Query:   40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAFY 753
            WLN  + L+Y+   F   P +  +  YN + GF V+   A + D  L   H    I++ IC   +    Y+++W+A   Q PG +   A+ + G++GVGK  F ++   + G   H       +   G F+    ++++ F +E            L  L+T  +   E KGI    +  +++R+I+ +N E  ++   +  R+F  I AS AR  DA YFG + + I+  G +   Y
Sbjct:  361 WLNHPERLSYDGVTF--DPTKKSNGYYNLYQGFPVK---AVKGDCGLYLEH----IRQNICLGDEDLYEYVLDWMADAIQNPGKRPGVALAIRGKQGVGKGVFVNVFASLFGP--HAIQVTQSSHLVGNFNAHLRDKLLVFADEAFWAGDKRAEGVLKGLVTEDNIAIEMKGID-VQSSPNYVRLILASNNEW-IIPASADQRRFVVIEASEARMQDASYFGSIINQIENGGREALMY 585          
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Match: A0A4Q3Y6A7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4Q3Y6A7_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 1.860e-14
Identity = 68/245 (27.76%), Postives = 112/245 (45.71%), Query Frame = 1
Query:   40 WLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEKYTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTRTAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENRVMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVIITTNAEHNLLRIRSKDRKFQYISASNARQNDAE----YFGKLSDIIKRPGVQRAFYDYL 762
            W    +   Y++  F+P  N     + N W GF VE       DN    + +   I++ I    + ++ Y++NWLA   Q+     RTA+VL+G +G GKS  + L  Y+ G   H+ TT    D  G+F+   E  +    EE               LI S   R E+K  G  + I + LR+++T+N EH ++R    DR++   S ++    D +    YFG+L + ++  G +    + L
Sbjct:  462 WFETARRREYDSVIFLPGGNAGLRNL-NLWRGFAVEP-----ADNPAGWSKLKDHIRDNIAGGDEQSSTYIMNWLAFAVQHLDQPVRTALVLIGAKGTGKSILSVLFGYIFGD--HHYTTAHPQDVLGKFNAHLEYVMTLGLEEAVAPDGRVNDGVFKHLINSDVLRLEEKFAG-VWKIPNHLRIMLTSNNEH-VVRADGHDRRYAVFSVTHPHVGDPDARRRYFGELVEQMESGGYEAMLGELL 696          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164356 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YWC3_9STRA1.040e-189100.00DUF5906 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835Z413_9STRA5.080e-5141.39DUF5906 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835Z558_9STRA1.370e-5040.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXX0_9STRA4.770e-3237.57Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A250XQS3_9CHLO1.310e-2130.96DUF5906 domain-containing protein (Fragment) n=1 T... [more]
A0A4R5H0C8_9ALTE1.260e-1929.39Integrase n=1 Tax=Alteromonadaceae bacterium M269 ... [more]
A0A2Z6SJJ6_9GLOM3.520e-1629.82DUF5906 domain-containing protein n=4 Tax=Rhizopha... [more]
A0A2I1HP98_9GLOM1.240e-1530.77DUF5906 domain-containing protein n=1 Tax=Rhizopha... [more]
D5BU03_PUNMI5.330e-1526.89DUF5906 domain-containing protein n=2 Tax=Candidat... [more]
A0A4Q3Y6A7_9PROT1.860e-1427.76Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:788595..789362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164356|e_gw1.31.151.1
DescriptionPhage plasmid primase P4 family
COG categoryS
Max annot lvl28221|Deltaproteobacteria
EggNOG OGsCOG3378@1|root,COG3378@2|Bacteria,1PDTD@1224|Proteobacteria,42TSY@68525|delta/epsilon subdivisions,2WV92@28221|Deltaproteobacteria,2M9V8@213115|Desulfovibrionales
Evalue9.17e-19
Seed ortholog525146.Ddes_2235
Hectar predicted targeting categoryother localisation
TranscriptId164678
TrackFilteredModels1
ProteinId164356
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164356gene_7431Tribonema minus UTEX_B_3156 geneContig_31 788595..789362 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7431_1exon_7431_1Tribonema minus UTEX_B_3156 exonContig_31 788595..789362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7431CDS_7431Tribonema minus UTEX_B_3156 CDSContig_31 788595..789362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164356Trimin1|164356|e_gw1.31.151.1Tribonema minus UTEX_B_3156 polypeptideContig_31 788595..789362 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7431 ID=mRNA_7431|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_31:788595..789362- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCAAGCAAGGGCAAAGATGATGAGGAGACTTTCTGGCTCAATGA
TGAGAAGATACTCACATATGAGGCATGTAGGTTTGTGCCTCCACCTAATG
AGTGCCCTGACACAGTGTACAACTCATGGAGCGGTTTCCTAGTGGAGAAG
TACACTGCAACGGAGGAGGACAATCACCTCCTGGACACACATGTGCTGCC
GTTCATCAAAGAGATCATATGCAACAATTACCAGCCGGCGGCGATATATC
TCATCAACTGGCTGGCGCAGCTGTTTCAGTACCCCGGGGCAAAGACACGC
ACTGCCATTGTGCTCCTCGGTGAGGAGGGTGTTGGTAAATCAAAGTTTAC
GCACCTGATCGAGTACATGTTGGGCATAGGCTTGCACTATCGCACCACCG
ACCTCCAAAATGACTGCTTCGGTCGCTTCAGCAACATTGCCGAGAACCGA
GTCATGGCTTTTTTCGAAGAGCTAGAGCCAAAGAAGGTGAACGCCTTCTA
CAACAAGCTCATGGACCTCATCACCAGCATGAGCTCACGCTGCGAGCAGA
AGGGCATAGGACACGCATTCAACATCTCCGACTTCTTGCGTGTCATCATC
ACCACCAATGCCGAGCACAATCTCTTGCGCATACGATCAAAGGATCGCAA
GTTTCAGTACATCAGCGCATCGAATGCGAGACAGAATGATGCTGAATACT
TCGGCAAGCTGAGTGACATCATCAAGAGGCCCGGTGTGCAGCGCGCATTC
TATGATTACCTCATGTAA
back to top

protein sequence of jgi.p|Trimin1|164356

>Trimin1|164356|e_gw1.31.151.1 ID=Trimin1|164356|e_gw1.31.151.1|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=256bp
MRASKGKDDEETFWLNDEKILTYEACRFVPPPNECPDTVYNSWSGFLVEK
YTATEEDNHLLDTHVLPFIKEIICNNYQPAAIYLINWLAQLFQYPGAKTR
TAIVLLGEEGVGKSKFTHLIEYMLGIGLHYRTTDLQNDCFGRFSNIAENR
VMAFFEELEPKKVNAFYNKLMDLITSMSSRCEQKGIGHAFNISDFLRVII
TTNAEHNLLRIRSKDRKFQYISASNARQNDAEYFGKLSDIIKRPGVQRAF
YDYLM*
back to top

mRNA from alignment at Contig_31:788595..789362-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7431 ID=mRNA_7431|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=768bp|location=Sequence derived from alignment at Contig_31:788595..789362- (Tribonema minus UTEX_B_3156 )
ATGAGGGCAAGCAAGGGCAAAGATGATGAGGAGACTTTCTGGCTCAATGA TGAGAAGATACTCACATATGAGGCATGTAGGTTTGTGCCTCCACCTAATG AGTGCCCTGACACAGTGTACAACTCATGGAGCGGTTTCCTAGTGGAGAAG TACACTGCAACGGAGGAGGACAATCACCTCCTGGACACACATGTGCTGCC GTTCATCAAAGAGATCATATGCAACAATTACCAGCCGGCGGCGATATATC TCATCAACTGGCTGGCGCAGCTGTTTCAGTACCCCGGGGCAAAGACACGC ACTGCCATTGTGCTCCTCGGTGAGGAGGGTGTTGGTAAATCAAAGTTTAC GCACCTGATCGAGTACATGTTGGGCATAGGCTTGCACTATCGCACCACCG ACCTCCAAAATGACTGCTTCGGTCGCTTCAGCAACATTGCCGAGAACCGA GTCATGGCTTTTTTCGAAGAGCTAGAGCCAAAGAAGGTGAACGCCTTCTA CAACAAGCTCATGGACCTCATCACCAGCATGAGCTCACGCTGCGAGCAGA AGGGCATAGGACACGCATTCAACATCTCCGACTTCTTGCGTGTCATCATC ACCACCAATGCCGAGCACAATCTCTTGCGCATACGATCAAAGGATCGCAA GTTTCAGTACATCAGCGCATCGAATGCGAGACAGAATGATGCTGAATACT TCGGCAAGCTGAGTGACATCATCAAGAGGCCCGGTGTGCAGCGCGCATTC TATGATTACCTCATGTAA
back to top

Coding sequence (CDS) from alignment at Contig_31:788595..789362-

>mRNA_7431 ID=mRNA_7431|Name=jgi.p|Trimin1|164356|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=768bp|location=Sequence derived from alignment at Contig_31:788595..789362- (Tribonema minus UTEX_B_3156 )
ATGAGGGCAAGCAAGGGCAAAGATGATGAGGAGACTTTCTGGCTCAATGA
TGAGAAGATACTCACATATGAGGCATGTAGGTTTGTGCCTCCACCTAATG
AGTGCCCTGACACAGTGTACAACTCATGGAGCGGTTTCCTAGTGGAGAAG
TACACTGCAACGGAGGAGGACAATCACCTCCTGGACACACATGTGCTGCC
GTTCATCAAAGAGATCATATGCAACAATTACCAGCCGGCGGCGATATATC
TCATCAACTGGCTGGCGCAGCTGTTTCAGTACCCCGGGGCAAAGACACGC
ACTGCCATTGTGCTCCTCGGTGAGGAGGGTGTTGGTAAATCAAAGTTTAC
GCACCTGATCGAGTACATGTTGGGCATAGGCTTGCACTATCGCACCACCG
ACCTCCAAAATGACTGCTTCGGTCGCTTCAGCAACATTGCCGAGAACCGA
GTCATGGCTTTTTTCGAAGAGCTAGAGCCAAAGAAGGTGAACGCCTTCTA
CAACAAGCTCATGGACCTCATCACCAGCATGAGCTCACGCTGCGAGCAGA
AGGGCATAGGACACGCATTCAACATCTCCGACTTCTTGCGTGTCATCATC
ACCACCAATGCCGAGCACAATCTCTTGCGCATACGATCAAAGGATCGCAA
GTTTCAGTACATCAGCGCATCGAATGCGAGACAGAATGATGCTGAATACT
TCGGCAAGCTGAGTGACATCATCAAGAGGCCCGGTGTGCAGCGCGCATTC
TATGATTACCTCATGTAA
back to top