mRNA_7415 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348800
Unique NamemRNA_7415
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348800 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:670331..671416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348800|estExt_Genemark1.C_Ctg_310076
Hectar predicted targeting categoryother localisation
TranscriptId349122
TrackFilteredModels1
ProteinId348800
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348800gene_7415Tribonema minus UTEX_B_3156 geneContig_31 670331..671416 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7415_1exon_7415_1Tribonema minus UTEX_B_3156 exonContig_31 670331..670750 +
exon_7415_2exon_7415_2Tribonema minus UTEX_B_3156 exonContig_31 671223..671416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7415CDS_7415Tribonema minus UTEX_B_3156 CDSContig_31 670331..670654 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7415UTR3_7415Tribonema minus UTEX_B_3156 three_prime_UTRContig_31 670655..670750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348800Trimin1|348800|estExt_Genemark1.C_Ctg_310076Tribonema minus UTEX_B_3156 polypeptideContig_31 670331..670654 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7415 ID=mRNA_7415|Name=jgi.p|Trimin1|348800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=614bp|location=Sequence derived from alignment at Contig_31:670331..671416+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACGTGCCGTTGCTGAGGCTGCCGACAGGCTGCACACAGCGCGCGC
CGCAGCGGAGGCTGCCAACAGGCTGCGCGAGGCTGCCGATCAGCAGCGCG
CTGCCGCCGACATGCAGCGCGCCGCCGCAGACAGCCTGCACGACGCCGCC
GCCGCAGACAGGCTGCGTGAGGCCGTCGACGCGCAACGCGCAGCCGCCGA
CGCGCAACGCGAAGCCGCCGACGCGCAATGCGAAGCCGCCAAAGCGCAGC
GCGAAGCCGCCAACGCGCAGCACGAAGCCGCCAATGCGCAGCGCGCCGCT
GTGGATGCTGCCGTCCCGGAATGAGCGCTGCCGCACCAGCAGGGTGCCAG
CGGCACTGCTACCGCCGCAGGGCCTGCCGCATCAGCGCCCTGCGGCCCCG
TCTTCGCTGATGCCCACGAGGCTGCCGCGGCGCCGGCACAGCTGCAGCAC
AGAAGCACACGAGAGCGCTACGATCGATGAGAGCACGATGAGAGCCATAC
CACTTGAGCAGACCGATTACAGCGAAAGGCAATGTTCATAGAGACCATTT
GAGCAGCGCAGACACAAGAGCGATACAATGCGATACGAGCGATACCACTT
GAGCAACACACACA
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protein sequence of jgi.p|Trimin1|348800

>Trimin1|348800|estExt_Genemark1.C_Ctg_310076 ID=Trimin1|348800|estExt_Genemark1.C_Ctg_310076|Name=jgi.p|Trimin1|348800|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
MSRAVAEAADRLHTARAAAEAANRLREAADQQRAAADMQRAAADSLHDAA
AADRLREAVDAQRAAADAQREAADAQCEAAKAQREAANAQHEAANAQRAA
VDAAVPE*
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mRNA from alignment at Contig_31:670331..671416+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7415 ID=mRNA_7415|Name=jgi.p|Trimin1|348800|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1086bp|location=Sequence derived from alignment at Contig_31:670331..671416+ (Tribonema minus UTEX_B_3156 )
ATGTCACGTGCCGTTGCTGAGGCTGCCGACAGGCTGCACACAGCGCGCGC
CGCAGCGGAGGCTGCCAACAGGCTGCGCGAGGCTGCCGATCAGCAGCGCG
CTGCCGCCGACATGCAGCGCGCCGCCGCAGACAGCCTGCACGACGCCGCC
GCCGCAGACAGGCTGCGTGAGGCCGTCGACGCGCAACGCGCAGCCGCCGA
CGCGCAACGCGAAGCCGCCGACGCGCAATGCGAAGCCGCCAAAGCGCAGC
GCGAAGCCGCCAACGCGCAGCACGAAGCCGCCAATGCGCAGCGCGCCGCT
GTGGATGCTGCCGTCCCGGAATGAGCGCTGCCGCACCAGCAGGGTGCCAG
CGGCACTGCTACCGCCGCAGGGCCTGCCGCATCAGCGCCCTGCGGCCCCG
TCTTCGCTGATGCCCACGAGGTGAGGCTCTTCCCGTCATGAGTGAAGGCA
TGCGGCCGCGCTGCGCAGCAAAGAGCCTGTGCGTTTCTCTGCCGGAGTCT
CTGCCTTCTTGAGCTGCAAGTCAATGTCATGAGCCATGGGGTTCGTGTGT
GGTTACTTGAAGCACAATGCAGCAGTAGTGTGTTGCTTGCGCATGCACGA
AAGCTGTACGGTACAGTCAGCCGTACGGTACAGTCACCGTTCTGAGGCTC
AATTGTACGGTGAACCCACTACTGCGCCAGGCTGCCTGTCTCTGCACTGC
AATGCCTCATGCAAGCTGCTGCATGTGCATGCTCCTGCGGCCATATTCCC
ATGCCCTCTTTCACGGCGTGGCGTGCCATGGGTGCATGCTGCCCTGCGCC
AGCTGTGCAGAGACAGTGTCATCACTTGAAGTTGTACATCAAGATGGCGA
CGCTCCTGATGCCTGTGCTTGCCTCGTGACACGCCACTGCAGGCTGCCGC
GGCGCCGGCACAGCTGCAGCACAGAAGCACACGAGAGCGCTACGATCGAT
GAGAGCACGATGAGAGCCATACCACTTGAGCAGACCGATTACAGCGAAAG
GCAATGTTCATAGAGACCATTTGAGCAGCGCAGACACAAGAGCGATACAA
TGCGATACGAGCGATACCACTTGAGCAACACACACA
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Coding sequence (CDS) from alignment at Contig_31:670331..671416+

>mRNA_7415 ID=mRNA_7415|Name=jgi.p|Trimin1|348800|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_31:670331..671416+ (Tribonema minus UTEX_B_3156 )
ATGTCACGTGCCGTTGCTGAGGCTGCCGACAGGCTGCACACAGCGCGCGC
CGCAGCGGAGGCTGCCAACAGGCTGCGCGAGGCTGCCGATCAGCAGCGCG
CTGCCGCCGACATGCAGCGCGCCGCCGCAGACAGCCTGCACGACGCCGCC
GCCGCAGACAGGCTGCGTGAGGCCGTCGACGCGCAACGCGCAGCCGCCGA
CGCGCAACGCGAAGCCGCCGACGCGCAATGCGAAGCCGCCAAAGCGCAGC
GCGAAGCCGCCAACGCGCAGCACGAAGCCGCCAATGCGCAGCGCGCCGCT
GTGGATGCTGCCGTCCCGGAATGA
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