mRNA_7384 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348781
Unique NamemRNA_7384
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: A0A835YW94_9STRA (Class II aldolase/adducin N-terminal n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW94_9STRA)

HSP 1 Score: 577 bits (1488), Expect = 2.060e-203
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 1 
Query:    1 MVLPEHAHGANPMGVSAAEWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANFNT 1005
            MVLPEHAHGANPMGVSAAEWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANFNT
Sbjct:    1 MVLPEHAHGANPMGVSAAEWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANFNT 335
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: A0A0G4GMS1_9ALVE (Aldolase_II domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GMS1_9ALVE)

HSP 1 Score: 242 bits (617), Expect = 3.080e-70
Identity = 145/319 (45.45%), Postives = 177/319 (55.49%), Query Frame = 1 
Query:   43 VSAAEWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANF 999
            +S AEW++RVE AA+ R L++YGF  DLAA                          QC+M R     + +LM EWG FFEE TAS  +V+V ++  L+D  T ER+PA A VVNMGC+PVA  I + RP+VNV+LH HP  VMAVA+ +  L P SQAA MFHG                       ++ YKYDF+YG  FE  +A GF    RAMLL+HHGMYTVGRT AEAFFV FYI QA  V  +    G  L  V+                   +E L  Q+ DMM SEDYAYDGSREW G+VRKL RE   +
Sbjct:  230 ISDAEWKARVELAAIGRLLYVYGFGSDLAA--------------------------QCIMSRAPDG-DGILMNEWGFFFEETTAS-SIVKVDWEDNLVDLETGERSPARADVVNMGCVPVATSILKARPDVNVVLHIHPIDVMAVASLEEDLQPYSQAAMMFHG----------------------QLSRYKYDFAYGDSFEAHLAEGFANGKRAMLLDHHGMYTVGRTVAEAFFVVFYITQAATVHLRAAATGRPLRRVS-------------------DEDLAEQWVDMMSSEDYAYDGSREWAGMVRKLNRELPGY 479
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: R1EJ36_EMIHU (Aldolase_II domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EJ36_EMIHU)

HSP 1 Score: 225 bits (573), Expect = 2.610e-65
Identity = 143/351 (40.74%), Postives = 182/351 (51.85%), Query Frame = 1 
Query:   55 EWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGF-DGT----LIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFM---------------------FHGVAXXXXXXXXXXXXXXXXXXXXX---------VTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANFN 1002
            EW+ R+E AA+AR +++YGF  DLAA                          QCVM RLR  P+ MLM EWG+FFEE TAS  LV+V F DGT    L+ +      P+   VVN+GC+PV   IF  RP+V  I+H HPHAVMAVA+T+AGLLPLSQA+                        H  A                              +  YKYDFSYG DFE A+A  F    RA++L+HHG+Y VG +A +A+FVTF+++QACEVQ +    G                   + LV+P+ E L+ QY DM+ S DYAYDGSREW G VRKL RE   ++
Sbjct:   45 EWQDRLELAALARIMYIYGFGSDLAA--------------------------QCVMARLRDEPDTMLMNEWGLFFEEATAS-SLVKVRFGDGTPPEGLLVAADGSVAPSKPDVVNIGCVPVGRAIFEARPDVFSIIHAHPHAVMAVASTEAGLLPLSQASPTPRPPSSSTARAPSLRQTPSRDLHTNARTARAAQHTSALPCCRPGPEREKEKASPRTIGRYKYDFSYGSDFEDAIAAQFAAGKRAIMLDHHGLYAVGTSARDAWFVTFHLHQACEVQLRAQSTG-------------------QALVMPSQEELQRQYADMISSPDYAYDGSREWAGCVRKLNRELPGYD 349
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: F0Y3L2_AURAN (Aldolase_II domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3L2_AURAN)

HSP 1 Score: 200 bits (509), Expect = 1.010e-57
Identity = 119/253 (47.04%), Postives = 142/253 (56.13%), Query Frame = 1 
Query:   31 NPMGVSAAEWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAK 789
            NP+ VSA EW  R E AAV RALHLYG   DLAA                          QCVM+R     +E LM EWGVFFEEVTAS  L++  FDG L++     R PA   V NMGCLPVA  IF+ RP+  +++H HP AVMAVA  +AGLLP+SQAAF  HG                       V+   YDF+Y   FE  +A GF    RAMLL HHGMY +G + AEAFFV +++NQACEVQ +
Sbjct:    1 NPLKVSAREWRDRTELAAVYRALHLYGMGDDLAA--------------------------QCVMMRTTETRDEFLMHEWGVFFEEVTAS-NLLKYDFDGHLVEP-DGSRAPALPDVSNMGCLPVAAAIFKARPDAAMVVHIHPPAVMAVAGMEAGLLPVSQAAFFLHG----------------------QVSREGYDFTYETSFEDNLAAGFADGKRAMLLNHHGMYAIGASPAEAFFVAYHLNQACEVQVR 203
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: UPI0011AAF479 (class II aldolase/adducin family protein n=3 Tax=Candidatus Pelagibacter TaxID=198251 RepID=UPI0011AAF479)

HSP 1 Score: 115 bits (287), Expect = 1.760e-25
Identity = 99/315 (31.43%), Postives = 146/315 (46.35%), Query Frame = 1 
Query:   67 RVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKY--DFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQY--QDMMLSEDYAYDGSREWGGIVRKLKREAANF 999
            R+E +A+ R LH+YG + DLA     AR                     C  V    HP       +G+F+EE+TAS  LV++  +G  +DS            +N GC+ +A  IF +R +VN  +H H + VMAV  TK GL+ LSQAA   + +                         Y++  D  +G  FE  ++         ++  +HG YTVG+TAAEAFF  +Y+ QAC VQ                VK LAM  +  ++     +  +A Y  ++M  S+DY YDG  EW  ++RKL+RE +N+
Sbjct:    9 RLELSALYRILHMYGMT-DLANQCAGARSAE---------------DKNCSFV----HP-------YGMFYEEITAS-SLVKIDQNGKKLDS--------DGPWLNDGCINLAQWIFNKRDDVNFYVHGHANDVMAVGGTKEGLMYLSQAAVYLNHLVG--------------------YIDYEFVEDKEFGSKFENLISK-----HDILITRNHGYYTVGKTAAEAFFRAYYLEQACSVQ----------------VKNLAMGLNKHEI-----DKQKAAYFWENMSDSDDYNYDGKTEWAALLRKLEREHSNY 241
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: UPI00094C6CAD (class II aldolase/adducin family protein n=1 Tax=Pelagibacter ubique TaxID=198252 RepID=UPI00094C6CAD)

HSP 1 Score: 114 bits (286), Expect = 2.420e-25
Identity = 98/314 (31.21%), Postives = 140/314 (44.59%), Query Frame = 1 
Query:   67 RVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQD-MMLSEDYAYDGSREWGGIVRKLKREAANFNT 1005
            R E +A+ R LH+YG + DLA                           QC   R     +   +  +G+F+EE+TAS  LV++   G  I+S            +N GC+ +A  IF  RP+VN  +H H + VMAV  TK GL+ LSQAA   + +                      +    Y+F    DF G       G    ++  +HG YTVG+TAAEAFF  +Y+ QAC VQ                VK L+M  S  ++    ++   A + D M  S+DY YDG  EW  ++RKL RE +N+ +
Sbjct:    9 RCELSALYRILHMYGMT-DLA--------------------------NQCAGARSAEDKDFSFVHPYGMFYEEITAS-SLVKIDKYGRKINS--------DGPWLNDGCINLAQWIFNSRPDVNFYVHGHANDVMAVGGTKEGLMCLSQAAVYLNHL----------------------IGYIDYEFVEDKDF-GKKFENLIGKHDILITRNHGYYTVGKTAAEAFFRAYYLEQACTVQ----------------VKNLSMGLSKHEI----DKQKAAYFWDNMSSSDDYNYDGKTEWAALLRKLDRENSNYKS 243
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: UPI00094C9923 (class II aldolase/adducin family protein n=1 Tax=Pelagibacter ubique TaxID=198252 RepID=UPI00094C9923)

HSP 1 Score: 110 bits (276), Expect = 5.660e-24
Identity = 95/320 (29.69%), Postives = 142/320 (44.38%), Query Frame = 1 
Query:   55 EWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRA---MLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANFNT 1005
            ++  R E AA+ R LH+YG + DLA                           QC   R   + +   +  +G+F+EE+TAS  LV++  +G  I++            +N GC  +A  IF  R +VN  +H H + VMAV  TK GL+ LSQAA   + +                      +    Y+F    D+     N F    +    ++  +HG YTVG+TA+EAFF  +Y+ QAC VQ K   MG  L++  I  +  A                   +++M  S+DY YDG  EW  ++RKL RE +N+ T
Sbjct:    5 DFNVRCELAALYRILHMYGMT-DLA--------------------------NQCAGARSIENKDNSFVHPYGMFYEEITAS-SLVKINKEGKAIENDNPW--------LNDGCNNLAKWIFNARQDVNFYVHGHANDVMAVGGTKEGLMYLSQAAVYLNHL----------------------IGYVDYEFVEDKDY----GNKFMSLIKQHDILITRNHGYYTVGKTASEAFFRAYYLEQACTVQVKNLSMG--LKVHEIDKQKAAFF-----------------WENMDKSDDYNYDGKTEWAALLRKLDREKSNYKT 243
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: A0A2D9U5R6_9PROT (Aldolase_II domain-containing protein n=1 Tax=Pelagibacteraceae bacterium TaxID=2026775 RepID=A0A2D9U5R6_9PROT)

HSP 1 Score: 107 bits (267), Expect = 9.540e-23
Identity = 82/264 (31.06%), Postives = 122/264 (46.21%), Query Frame = 1 
Query:  211 QCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAA-FMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANF 999
            QC   R   +    L+ ++G+F+ E+TAS  L+ V  +G  +D     ++P     +N GCL +   IF  R +VN  +H H   VMAV  T+ GL   SQAA ++ H                        +    YDF+   D+     N  K     ++  +HG YT+G+TAAEAFF  +Y+ QAC VQ                +K L+M  +   +     +  E  +Q M  S+DY YDG  EW  ++R+L RE AN+
Sbjct:   30 QCAAARSSENKNIFLVHQYGMFYNEITAS-SLIEVDNNGKPLD----PKSPW----LNDGCLNLCKWIFNTREDVNYYVHGHSENVMAVGGTEEGLQYFSQAAVYLSH-----------------------LIEYIDYDFTEDDDYGEKFKNIIKK-KDIIITRNHGYYTLGKTAAEAFFRAYYLEQACSVQ----------------IKNLSMNLTPRPI---DKQKAEYYWQHMSKSDDYNYDGKTEWAALLRRLDRENANY 241
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: UPI00177CD064 (class II aldolase/adducin family protein n=1 Tax=Mesorhizobium silamurunense TaxID=499528 RepID=UPI00177CD064)

HSP 1 Score: 106 bits (265), Expect = 2.640e-22
Identity = 77/251 (30.68%), Postives = 115/251 (45.82%), Query Frame = 1 
Query:  250 MLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLE-HHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANF 999
            ML   +G+F EEVTAS  L++VGFDG+ ++    E  P+   +  +         F  RPE+N ++H H  A+M V+A   G+ P SQA  M  G                       +   +Y+F    DF   +        ++M++E  HG + +GRT  EAFF +FY++QAC VQ +V   G             A   +L  L  P    ++    DM  S+ Y YDG+ EW   +R + REA  +
Sbjct:   56 MLTHCYGLFNEEVTAS-NLIKVGFDGSNMNPENGEPNPSATEIAKL--------FFEARPEINSVMHIHTKAIMGVSAQTTGVQPYSQAFLMIGGAEQ--------------------IGYTRYEFECTDDFLSGLLKA--AHNKSMIVEAFHGAFVLGRTVGEAFFRSFYLDQACAVQLEVQSGG-------------AAGAALMTLGQP---EIDRHLADMAKSDWYGYDGALEWKACLRCVDREAPTY 259
[Close]
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Match: A0A434W4Q3_9HYPH (Aldolase_II domain-containing protein n=3 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A434W4Q3_9HYPH)

HSP 1 Score: 104 bits (259), Expect = 1.750e-21
Identity = 95/327 (29.05%), Postives = 132/327 (40.37%), Query Frame = 1 
Query:   25 GANPMGVSAAEWESRVEAAAVARALHLYGFSGDLAATTMRARRTSLQXXXXXXXXXXXXXXXQCVMVRLRGHPEEMLMVEWGVFFEEVTASFGLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILHTHPHAVMAVAATKAGLLPLSQAAFMFHGVAXXXXXXXXXXXXXXXXXXXXXVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFVTFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEAQYQDMMLSEDYAYDGSREWGGIVRKLKREAANFNT 1005
            G  P   S AEWE+R E AA+  AL  Y             R T L                Q   +R+ G  E +L   +G   EEVTAS  L++VGFD T  +    +  P+   +  +         F   P+ N I+H H  A+M V+A   G+ P SQA  M  G                       +    Y+F    +F   +    +G  +A++   HG +  GR A EAFF +FY++QAC VQ +V    P                  E   +P NE  +   QDM  S+ YAY+G  EW  I R+L  E   + T
Sbjct:   10 GQRPANCSDAEWEARCELAAIYNALVKY-------------RLTDLTN--------------QWHAIRVPGE-EALLTHHYGWMHEEVTAS-NLIKVGFDRTNHNPENGKPNPSATEIGKL--------FFEAEPDKNCIMHIHTKAIMGVSAQAGGIGPYSQAYLMIGG--------------------GDVIGYTDYEFECTDNFLSGLLRAGRG-KKAIVEAWHGAFVFGRDAGEAFFRSFYLDQACAVQLQVQQSAPA---------------GAEIRTIPENEQ-QRHLQDMAASDWYAYEGELEWLAIRRRLDVEMPRYKT 262
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348781 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YW94_9STRA2.060e-203100.00Class II aldolase/adducin N-terminal n=1 Tax=Tribo... [more]
A0A0G4GMS1_9ALVE3.080e-7045.45Aldolase_II domain-containing protein n=1 Tax=Chro... [more]
R1EJ36_EMIHU2.610e-6540.74Aldolase_II domain-containing protein n=1 Tax=Emil... [more]
F0Y3L2_AURAN1.010e-5747.04Aldolase_II domain-containing protein (Fragment) n... [more]
UPI0011AAF4791.760e-2531.43class II aldolase/adducin family protein n=3 Tax=C... [more]
UPI00094C6CAD2.420e-2531.21class II aldolase/adducin family protein n=1 Tax=P... [more]
UPI00094C99235.660e-2429.69class II aldolase/adducin family protein n=1 Tax=P... [more]
A0A2D9U5R6_9PROT9.540e-2331.06Aldolase_II domain-containing protein n=1 Tax=Pela... [more]
UPI00177CD0642.640e-2230.68class II aldolase/adducin family protein n=1 Tax=M... [more]
A0A434W4Q3_9HYPH1.750e-2129.05Aldolase_II domain-containing protein n=3 Tax=uncl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:414893..424308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348781|estExt_Genemark1.C_Ctg_310042
BRITEko00000,ko04812
KEGG koko:K18622
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000228,GO:0000793,GO:0000794,GO:0000902,GO:0000904,GO:0001101,GO:0001701,GO:0001709,GO:0001894,GO:0002262,GO:0002376,GO:0002520,GO:0003006,GO:0003008,GO:0003013,GO:0003018,GO:0003674,GO:0003779,GO:0005080,GO:0005102,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005903,GO:0005911,GO:0005912,GO:0005913,GO:0005938,GO:0006807,GO:0006810,GO:0006811,GO:0006884,GO:0006928,GO:0006935,GO:0006950,GO:0006986,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007049,GO:0007051,GO:0007098,GO:0007154,GO:0007155,GO:0007159,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007294,GO:0007300,GO:0007301,GO:0007399,GO:0007409,GO:0007411,GO:0007525,GO:0007527,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0007616,GO:0008015,GO:0008064,GO:0008092,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008290,GO:0008302,GO:0008356,GO:0008361,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0009994,GO:0010033,GO:0010035,GO:0010038,GO:0010639,GO:0010720,GO:0010927,GO:0014069,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0016604,GO:0019229,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0020027,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022610,GO:0023052,GO:0030029,GO:0030030,GO:0030036,GO:0030054,GO:0030097,GO:0030099,GO:0030100,GO:0030154,GO:0030182,GO:0030218,GO:0030239,GO:0030425,GO:0030507,GO:0030706,GO:0030716,GO:0030723,GO:0030724,GO:0030725,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030837,GO:0030856,GO:0030858,GO:0030968,GO:0031023,GO:0031032,GO:0031175,GO:0031333,GO:0031410,GO:0031503,GO:0031974,GO:0031981,GO:0031982,GO:0032092,GO:0032271,GO:0032272,GO:0032279,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032535,GO:0032879,GO:0032956,GO:0032970,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033554,GO:0033993,GO:0034101,GO:0034620,GO:0034976,GO:0035150,GO:0035183,GO:0035264,GO:0035296,GO:0035324,GO:0035966,GO:0035967,GO:0036477,GO:0036498,GO:0040007,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042592,GO:0042608,GO:0042692,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043009,GO:0043062,GO:0043063,GO:0043170,GO:0043197,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043242,GO:0043244,GO:0043254,GO:0043393,GO:0043933,GO:0044057,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044309,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0044877,GO:0045121,GO:0045123,GO:0045165,GO:0045169,GO:0045170,GO:0045171,GO:0045172,GO:0045202,GO:0045214,GO:0045478,GO:0045595,GO:0045597,GO:0045601,GO:0045603,GO:0045765,GO:0045766,GO:0045807,GO:0045907,GO:0046982,GO:0046983,GO:0048134,GO:0048135,GO:0048232,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0048873,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050880,GO:0050890,GO:0050896,GO:0050900,GO:0050901,GO:0051015,GO:0051016,GO:0051017,GO:0051049,GO:0051050,GO:0051094,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051130,GO:0051146,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051301,GO:0051321,GO:0051493,GO:0051494,GO:0051592,GO:0051641,GO:0051668,GO:0051674,GO:0051693,GO:0051704,GO:0051716,GO:0055001,GO:0055002,GO:0055085,GO:0060249,GO:0060284,GO:0060627,GO:0061061,GO:0061564,GO:0061572,GO:0061756,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070161,GO:0070887,GO:0070925,GO:0071229,GO:0071241,GO:0071248,GO:0071277,GO:0071300,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0071944,GO:0072499,GO:0090066,GO:0097120,GO:0097435,GO:0097447,GO:0097458,GO:0097485,GO:0097708,GO:0097746,GO:0098589,GO:0098590,GO:0098609,GO:0098794,GO:0098805,GO:0098857,GO:0098862,GO:0098984,GO:0099568,GO:0099572,GO:0110053,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:1901342,GO:1901550,GO:1901552,GO:1901564,GO:1901700,GO:1901701,GO:1901879,GO:1901880,GO:1902903,GO:1902904,GO:1903046,GO:1903140,GO:1903142,GO:1903391,GO:1903393,GO:1903522,GO:1903524,GO:1904018,GO:2000026,GO:2000249
Preferred nameADD1
Descriptionactin binding
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0235@1|root,KOG3699@2759|Eukaryota
Evalue1.65e-68
Seed ortholog2903.EOD22966
Hectar predicted targeting categoryother localisation
TranscriptId349103
TrackFilteredModels1
ProteinId348781
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348781gene_7384Tribonema minus UTEX_B_3156 geneContig_31 414893..424308 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7384_13exon_7384_13Tribonema minus UTEX_B_3156 exonContig_31 414893..415589 -
exon_7384_12exon_7384_12Tribonema minus UTEX_B_3156 exonContig_31 416273..416344 -
exon_7384_11exon_7384_11Tribonema minus UTEX_B_3156 exonContig_31 416833..416880 -
exon_7384_10exon_7384_10Tribonema minus UTEX_B_3156 exonContig_31 417790..417887 -
exon_7384_9exon_7384_9Tribonema minus UTEX_B_3156 exonContig_31 418706..418773 -
exon_7384_8exon_7384_8Tribonema minus UTEX_B_3156 exonContig_31 419400..419479 -
exon_7384_7exon_7384_7Tribonema minus UTEX_B_3156 exonContig_31 419564..419668 -
exon_7384_6exon_7384_6Tribonema minus UTEX_B_3156 exonContig_31 420749..420847 -
exon_7384_5exon_7384_5Tribonema minus UTEX_B_3156 exonContig_31 421609..421656 -
exon_7384_4exon_7384_4Tribonema minus UTEX_B_3156 exonContig_31 422313..422440 -
exon_7384_3exon_7384_3Tribonema minus UTEX_B_3156 exonContig_31 422545..422561 -
exon_7384_2exon_7384_2Tribonema minus UTEX_B_3156 exonContig_31 422697..422749 -
exon_7384_1exon_7384_1Tribonema minus UTEX_B_3156 exonContig_31 424222..424308 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7384UTR3_7384Tribonema minus UTEX_B_3156 three_prime_UTRContig_31 414893..415484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7384CDS_7384Tribonema minus UTEX_B_3156 CDSContig_31 424222..424308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348781Trimin1|348781|estExt_Genemark1.C_Ctg_310042Tribonema minus UTEX_B_3156 polypeptideContig_31 415485..424308 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7384 ID=mRNA_7384|Name=jgi.p|Trimin1|348781|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1600bp|location=Sequence derived from alignment at Contig_31:414893..424308- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTGCCGGAGCATGCTCACGGGGCCAATCCGATGGGTGTGTCAGC
TGCAGAGTGGGAGAGCAGGGTGGAAGCCGCAGCAGTGGCGCGCGCGCTGC
ACCTGTACGGCTTCAGCGGCGACCTCGCGGCAACGACCATGCGCGCGCGC
CGCACCTCACTGCAGGCGCGCGCGCTGCACCTGTACGGCTTTGGCGACGA
CCTCGCGGCGCAGTGCGTCATGGTGCGGCTGCGCGGACACCCCGAGGAGA
TGCTCATGGTGGAGTGGGGCGTCTTCTTTGAAGAGGTGACGGCCAGCTTC
GGCCTCGTGCGCGTGGGGTTCGACGGCACGCTGATCGACTCTGTCACCGC
GGAGCGGACGCCCGCGACGGCGAGCGTCGTCAACATGGGCTGCCTGCCCG
TCGCGGTGCCTATATTCCGGGAGCGGCCAGAGGTCAACGTGATACTGCAC
ACGCACCCGCACGCGGTCATGGCTGTGGCGGCGACCAAAGCGGGACTGCT
GCCGTTGAGCCAAGCCGCCTTCATGTTCCACGGCGTGGCCGTGGCCGCCA
CCAAGGCAGGGCTGCTGCCGCTGAGCCAGGCTGCCTTCATGTTTCACGGC
GTGGTGACGACGTACAAGTACGACTTCTCCTACGGCGGCGACTTTGAGGG
CGCCATGGCCAACGGCTTCAAGGGCTTCACCAGAGCCATGCTGCTGGAGC
ACCACGGCATGTACACGGTCGGCCGCACCGCCGCGGAGGCATTCTTCGTG
ACCTTCTACATAAATCAGGCCTGCGAGGTGCAGGCCAAGGTCACCATAAT
GGGCCCTGAACTGGAGATTGTGGCTATCTTCGTCAAGGCGCTCGCCATGG
CGAACTCGCTAGAGGACCTGGTGGTGCCGACTAACGAACATCTCGAGGCT
CAGTACCAAGACATGATGCTGAGTGAGGACTACGCATATGATGGGTCCAG
GGAGTGGGGCGGCATTGTACGCAAGCTCAAGCGCGAGGCCGCAAACTTCA
ACACCTAACCCTAATGTTAGGGTATGACCCCCCTAAACCCCCGCCGGCCC
CCCCTTTCGTTTCGAGTGCGCGTGTGTGTAGCAGAGACCAGTGGTGTACA
AAGGCACGCTCGGCAAAGTAAGTAGAGCAGTACATAGTAGGCCCCGCCCA
TGTGGGCTCTTCGCGCCGCGCGGCACGCAACTTCAACTTCAACTTCCTGG
GGTGCGAGACAGCGGCGCTGCGGACGGCCACGTACACATGTAGCACAAAA
ATGGCGCGTCACAGCAGCGCCGCCGCAGCCACGCTCAGCGCCGCAGGCTC
AGTCAGCACACCATCAGACATCACCCCGCTCGCTGGCACTGTCGTTTCAA
GCGCCTGGTTTTTGGCGGTGGTGCAGGAGGTGCGTAGCAATGGCAGCGCC
GCGCGCCGAACGCGGCGATAGTTGAAGTGACGTGCCCCTTTCACGCCGCA
AGTTTGTTCACAGAGTATTATTTGTGCCCCCGTGGAGTGGCGTGCGGGCT
CCTGTGTATGGCTGTCAATACTGTCGGGCGTAATGACATACCGTTGGGAC
TCTTGTTTTCGCTGCGCTTGCCGGATGTAATCAGACTGCTTTGGTGCCAG
back to top

protein sequence of jgi.p|Trimin1|348781

>Trimin1|348781|estExt_Genemark1.C_Ctg_310042 ID=Trimin1|348781|estExt_Genemark1.C_Ctg_310042|Name=jgi.p|Trimin1|348781|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=336bp
MVLPEHAHGANPMGVSAAEWESRVEAAAVARALHLYGFSGDLAATTMRAR
RTSLQARALHLYGFGDDLAAQCVMVRLRGHPEEMLMVEWGVFFEEVTASF
GLVRVGFDGTLIDSVTAERTPATASVVNMGCLPVAVPIFRERPEVNVILH
THPHAVMAVAATKAGLLPLSQAAFMFHGVAVAATKAGLLPLSQAAFMFHG
VVTTYKYDFSYGGDFEGAMANGFKGFTRAMLLEHHGMYTVGRTAAEAFFV
TFYINQACEVQAKVTIMGPELEIVAIFVKALAMANSLEDLVVPTNEHLEA
QYQDMMLSEDYAYDGSREWGGIVRKLKREAANFNT*
back to top

mRNA from alignment at Contig_31:414893..424308-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7384 ID=mRNA_7384|Name=jgi.p|Trimin1|348781|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9416bp|location=Sequence derived from alignment at Contig_31:414893..424308- (Tribonema minus UTEX_B_3156 )
ATGGTGCTGCCGGAGCATGCTCACGGGGCCAATCCGATGGGTGTGTCAGC
TGCAGAGTGGGAGAGCAGGGTGGAAGCCGCAGCAGTGGTGAGGACATAGT
ACTGTTACGCACACAACTGATATCATGTCTCCATCTCGGACGCCACCGCA
GCTGTCGTACCACAGATGTACAGCCGCAGCAGTGGTGAGAACACGGTACT
ACTATGCACACAATTAGTGTCACTTTCCCATCTTGGGCGCCACCGCAGCT
GTCGTACCACGGATGTGCAGCAGCCACAGCATGCGCAGGACGGATGTGCA
GAAGCCACAGGTTCATGCGCAGTTCACCATCAGCGCCCCCACAGAGCACA
AGAAAGCACCAGCGCTGCCAATCACTCTACTTGAACAAAATATCGACAAC
AGTTGTCACGGATGCAATTGACGACCAATGTTGTAGCGGCCATGATCCTG
TGTGGTCGTCAATGACTTGGATCTGGCCACCCCTCCCTTTCTGGTTAAGC
CACAGCACTTGGCTGTGTAGATATTTATAACTCGTAAACATACAAAGGCA
CCCTGGCGGCTCAGCGCACAGTCGTGAACGTCACGTGCAGCAGCATGTAC
CACGTGTGTCTCACGCCTTGCAGCCTCTCACTGACGGCGGCATCGTGCAA
CGCGGCAGTGCACATAGTACAGTACAGTACACTTACTACAGTGTAGATGC
AGTACGCAGTACACAGTGCCACCAAGTTGCTCTGACTGCCAATGTATCAC
CCGCTGCTGACATGACCTTGCAGGCGCCGCATCAGCAGATTGCTGACGGC
AACTAACCCTAACCCTAAGCAAATGCAGCGTTGCGCCCTGCGCCCAAACG
CCCGGGATCGCTCGGACGGCTGAACGCTCTCAGCGGCCAGCGCCTTCATT
CCGACTCTCATTACTGGGTACGACGCATGCACAACGTTGTTGTGTCAAAA
GCTTGCTGCAACGTCGACAGCTGTCGCTCACTAGCCGTTGCTCCACAACG
CCAGAGGTTGACATTGAGGTGACAACTGTAACAGAAGACCGATGCCGGTC
GTGTGCTGTTGGAAGTGATTGTACTGTGGTCTGTGTGTCGGCAAGTGTAA
CTGCCGTAGTTGTCAAGCGTGCAAACGGAATGCGCATGTAACTGCCACAT
GCTCCAACGAAATGCAACTGCCATATGCTCCAACAAAACAACTACAACTA
CCTCCTGCTGATCTACTCTTGCTGCAAAACCGCGCGCTGCGCACTGCCGC
CGAGCGCTCTCACTGGACCGCCGAAGACTCTGAGCAGCCGATGCCTTCAC
TCAGACCCTGATACTGAGTATGGCGCACGCAACAGATTTTTGTGTTTAAC
ACTTCCTCCTGCTGACACGCTCCTGCTGCTGCCAAACCGCGCGCTGCGCA
CTGCAGGCTCAGCAGTTGAGCCCTTCATTCACACTCTCATTACTGGGTAC
AACACACGCGATAACGTGTAGACTACGTACTTCACAATTATTCATGACAT
TTGACATAAACTTTCGCTGACGCGCGCCTGCTGCCAAAATTGTGCGCTGA
GCACGGCAGGCGCGCGCGCTGCACCTGTACGGCTTCAGCGGCGACCTCGC
GGCAACGACCATGTAACTGCCGTAACCGTCAAGCGTGCCGACGGCAGTTC
AGCATTATGCTGCTTGTAACTGCCATGTGCCCCAATAAATCTACGTCCTG
CTGATACGCGCGCGTGCTGCCAAACCTGCGCGCTGAGCACTGTGCAGGCG
CGCGCGCCGCACCTGTACGTCTTTGGCGGCGACCTCGCGGCAACGAGCAT
GTAACTGCCATATGCTCCAACAAAACAACTACTCCCTGCTGATACGCGCC
TGCTGCTAAACCGCTGAGCACTGCAGGCGCGCGCGCTGCACCTGTACGGC
TTTGGCGACGACCTCGCGGCGCAGTGCGTCATGGTGCGGCTGCGCGGACA
CCCCGAGGAGATGCTCATGGTGGAGTGGGGCGTCTTCTTTGAAGAGGTAA
GCAACGAAGAGGGAGGGGGGGGGTTATACTCTGCACAGGAGTGAGGCGTC
TTCTTTGAAGAGGTGCGAACGGCCGCGTTCTCTCAACTCGTGGCAGGAGA
GCTGTCACTTCACCTCTGTTGCTGGTGTGTTGTGTGCTTTGGCACCCCTT
TTCAAAAGACTCTATAGAGTAAGCTGCGCTTGCAATACAGTAGGGCTTTG
GTCAAAGACGGTGTACATGTGTATATGGGTGGCACGCCCTGCGTTGAACG
CTGCTTGCACAGCTGGGGCTTAACCAAGGGCGGTTTGACGCAGTCTGCAT
TGTGCTGAAGGTTCGGGTCGGGACCTTTTGGTGTCAGCAGTGCTGCATGC
GCACGGGTGTTCTGACAGCGCTGTGATCTCCTGTGGCTTTCTGTGCATTG
TGGATGTGTGCTGAGATCCTCCCGCGGGCGCCATGCTCTTGTGCGTGCGT
ACGCACCCACCCTAATATTGCTGGTCGGCCCGTGCTGGATCTGACGGCGC
GCGGCAGCGCAGGCTTGCGCGTTCATCCGCACCGCGCTCGCGCGCGCACC
GCCGCCTTGTTTTCCATTTCAATCACCTCTTTCATTCCAGGTAACGTCCG
TCGGCAGCGGCCCGCTCACACGCTACTCCCGCCGCTTCTTCACATGTTGC
AGGTGACGGCCAGCTTCGGCCTCGTGCGCGTGGGGTTCGACGGCACGCTG
GTGAGCAGCAGCGCTCAGGCGATGGCGGCTCGCGTCGCCTTCCCAGCTTG
TGCGACACAGCAGCGCAGCGCATGGGCTGCTTGCGTAGTACACACCGCCA
CATACCTGTGCTGTTGCTTCCGCAGCGTGTGTGACAGCACGGCGCCAGCA
CTGCGACAGAGTGGCACAACGCAGCGCATAGGCTGCTTGTTCGATACGCA
TTGTCGGTGTGTGCTGCCGTTGCTTCCGCAGCGTGTGTGACGGCGCGGGC
GCGGCGCGTGGGCGCAACGCGTAGACGCGCAAAGATGCATTAGCGGCAGC
CCGCGCTCTCTCTCAGTCGCGCCCGCGCCTTGACAGTCTCATGATGTGAC
GGTTGTGTGAGGTTCAGGCTAACCCTGACCGTAAGCAGGCCAACCCCAAC
CCTTAACCTACGTTCAGTGGACGCCGCAAGTCCCACGATGCACGGCGCCG
CAGCTTAGGCGCATACGCTGTGACTGTGCCAGCGGCACATGCTCCGTTCG
TCGCCTGAGATCTGACAGTTACGCGCTGTGGAAGTTCCGCCCTGCGGCGC
ACCCGGCACCATACATACCTACCTGCTCCATGAAGTACATGCGTGCATGC
ATCACCGCAGTAGCAGTCCTGCAGTGCTCTGCAGCCCCGCCGCCGCAACG
TCGCTCCCGACGCTCATCTAAGCGCACAGCGGTGTGCGCGCCTGCACGAC
TCTCACGCACATTCGGCTTGCTGACTCGGACTCTGATCGTGCGTGTGGTG
TGCGCCCGCAGATCGACTCTGTCACCGCGGAGCGGACGCCCGCGACGGCG
AGCGTCGTCAACATGGGCTGCCTGCCCGTCGCGGTGCCTATATTCCGGGA
GCGGCCAGAGGTGAGAGGCGCCGCCACATGCCGCTATCGGAGCGGTGATG
ACCGCATGTCAGCGTGCAGCGCACTCGTGTTGCACTCGCCGCACCCAAGC
AGCGGTGACGTGCACAGTGGAGAGTTTAGCGGACTGTCGCCGTGCATGCA
TAGACTGGTATCGCGGCGGCGTGCACATGTGTAGCGTTGGAATTGCAGAA
CCAATGCTGTCATGTATATTCCGGTAACGGCCAGAGGCGAGCGCCGCCGC
CGCGCGGCGCCGTCTGAGCCGCAGTGACCTCAGACCGCACATCAGCGTGT
TGCGCGGTCGCGTATTGCAGTAGCTGGGGAACGGCAAAAATAGTCTAGGC
ATGCCGTCGAGTAGCAGGAATACGCGAGTTGGAAGTGTGCCTGACTGTCG
GCGTACACGAGTGGACGGGCAACGCAGCGGCATGCACATGTGCAGTGGCG
GTCACTCCCCGGTGTCCTGCGGTGCTGTGGCGCCTCGCGCTGCCGCTGCC
GCTGCCATCCTGTCGCGGCGTCGCACGTTTGAGATGGGGGGCAGCTCTGT
CCGTAGGTGCACGGTGGTACGAGCGGGGGGCCTGCCCCTGGGCTGGCACC
ATGCGGGCGGCACAGTGGACGCAAAAGGAAGCCTGAGAGCTGCATCTACG
GCCCAAGCATTCAGGGCGGGCAGAGACTGATGTGACAGCAGCACGCGTGT
CTGAGCTGCTTCGGCGTGCCACCTGATCTCGCCTTCTGCATGGGGCGTGC
CGCATGCGACATGTTTGCATGTACGCGTAGCAACGGCGTCAGTGCTCATT
GTATGGCTGCGTATGCGTCCTCGTGCGCCTTGCTCTCTGCGTGTCCCCGT
CATCTCGTGTGCACGCGAATGTGATACTGCACACGCAAGTACATGCTACA
GTAACCATAAACTGATAATGCGCTGATCGTCCGCTGCGTCCCTCTGCTCT
CTGCACATTTGCGTCGGGCGCAGGTCAACGTGATACTGCACACGCAAGTA
CACGTTAATCCTGAAATGATCATGCGCTAAGTGTACGCTGCGTATGCCTC
CCTCTGCGCTTTGCCCTCTGCGCCTTCGCGTCGTGTGCAGGTCAACGTGA
TACTGCACACGCACCCGCACGCGGTCATGGCTGTGGCGGCGACCAAAGCG
GGACTGCTGCCGTTGAGCCAAGCCGCCTTCATGTTCCACGGCGTGGTGAC
GACGTACAAGTGAGTACACGTGCGGTACATGTGCGGTACACCTATAGTGG
TACACGTGAGTACACCTGCACGCGGTCAGGCCGTGGCCGCCACCAAGGCA
GGGCTGCTGCCGCTGAGCCAGGCTGCCTTCATGTTTCACGGCGTGGTGAC
GACGTACAAGTGAGTACACGTGCAGTACACATGAGTACACCTGCAGGGAG
GTGTAGGCATGGGACTAAGAGGCGGGGCTGCTGCTGCTGAGCCAGGCTGC
CTCGATTGCGTGGTCTCGACACACAAGTCATTTTTGCCTGTAGTACAAGT
AGGCACACCTGACTACACATGAGCGCGAGCGAGTGCACCTGCAGTGCATG
CGATTGCACCTGCGCATCGTACAAGGGGGGACACCAGTAGAGTTTGCGCG
ACTGCACAGGGAGCCTGTACGGCTATTGTCTCGCTGGTGCCGGCTAGTGC
AGACAGAGCGGCTTGCTCGCGCCGCTGTAGGCGCAGTGAGCGCCTCGCCT
GTGCCTCTGCAAGCGGGGGCGTGAGGTGAGAGGTCGACACTCGCCCCCAG
CGCGCCTTGCACCTGTCGCGTGCTCGTTTCATTGCTGCCACGACTCCAGG
ATGCCAGCGCCTGCCTAGCACTGCCCCGAGTGGGGTGAGAGGTTGGTGTT
CCCTCCCACCGCACGTTGCATCCGTCGCATGCGCACTTCACGGCGTCAGT
GCCTGCCTGGCATGGCCCCGTTGACACTCTGTTTAGCGCACTGACGCGCG
GAACGCTCCCATGTACGTGCTGCATCGCATCGCAGGTACGACTTCTCCTA
CGGCGGCGACTTTGAGGGCGCCATGGCCAACGGCTTCAAGGGCTTCACCA
GAGGTGCGCCAACACGCCGCTGTAGCTGTCGCTGGGAACACGCATGAACC
ACAGAAGTATAGGCCGCAACGCGCAACAAGCCCATACTTCAACAGATGCG
CCGCGCGCAGCGTGAGCAACCGGAGCGTCGCCGGCGCTCGTCGCGCATGC
GGAGCGTTGCTGTCCGAGTGCCTGTGGCAGCGCCGCGATCGCGCATGCGC
CAGACGCCGTGGCAGTCGCTGACAATGGCCAGAGCAGCGCAGCGCAGCGC
TGCGATGCGCGCTGACACGCGTCAGTCGCGAGCAGTGCTTGCGCAAAGTC
ATGCTTACGCATGCGCTTGCAGTCGCTGTGTCGCGGTGCACGCGAGGTGG
CGGTTTCATGCGGCGTCTGAGCGCGCGCTCAAAACCAGTTCTCGTGTTTG
TGGTGCAGTACCTGGCATGTGCTGCTGGGTGGTTCTTGACATAGTTCCTG
CGCCTGTTCGGGTTAGGTTAGGGCTAGGGCTAGGGTCCAGGGTTAGGGTT
AGGCGTCTGTTTGTTGGAAACTGGGTCTGCGCAGCCCACTGGTTCTCATG
GCACTCAACCACTGCTTTCACTCACCCTTCGGGTTGCACAGAAGCGTATT
GTTGAAGTTTATTTCTGAGTTCAAGTGCCCGTTTTGTGATGGTCTGTATG
CTCAGAATGGATCAGACTCACAACAATCCCCCACAAATGCGCCGTTTGCG
CAGCACGTTATCATGCTGAGTTTTGCTCAAGACGTATGCCAGGTCGCCAA
ATACGCCCTGAACACGTTTGCGTGCAACCCTATGACTCACCCTGGAGCCT
CCGCCGCGCTTCTCTGCGCAGCCATGCTGCTGGAGCACCACGGCATGTAC
ACGGTCGGCCGCACCGCCGCGGAGGCATTCTTCGTGACCTTCTACATAAA
TCAGGCCTGCGAGGTGCAGGTGAGACCACTTTCGCGACCATGTAGTTCCA
TGTTGAAGTACTATGCTTGAAGTACATGCATACCGCACGCCGTGACATCA
ACGGCCCAAGCAATTGTAAATGTCACAGCAGGTATCGCCTCACTTTCCCT
TTGTCCTTGCGTTCCCTGTTTGGGACTGGATGTCTGCTGTGGGCCAACAC
ACATTGTGAAGCACGCCATACTTTACGTATCCCCATGAGCATTCCTGCAT
ACTTCAAAGAACTACTGCGGAGGTATCAACCGGCGTACTGTGGGAAGGCA
CTTTGTTACATTGACGGGACAAGTATTCTTGCACATGTACTTTTATTATA
TTCCACTTGTGGCTGTGGAAATGCCATGTTGTAGGTGTGTCGCCTTGTTT
TCACTCTTGGGTGTAGCATGCAAAGCTTGCACGCCGCACCCCGCCCCCCA
CATCACCCCCAACAAAGCACCCGCAAGCGACTGTCCCCCACATACTAGCA
GGGATACTGAACAAAGCTACAAGACTCTCCCCCCACAGACAGACCCGTCT
TAGGGCCACCCAGCTCCACGCAGACTCCATCTCAAAGTTTTCATGCAGGC
CAAGGTCACCATAATGGGCCCTGAACTGGAGATTGTGGCTATCTACGTGA
ACCCCGATATCATAAAGATAAGCAGAGGGACTTACTGGGCGCCAGGCGCT
GACGCTAGAAACAAAGGCTGTATAACTAAGCAAAGCATCGCCTCCTTGAT
GGGCGAGACGGTGGTTCACCGGGCCCCCCATATCACCCCCAACAAAGCAT
CCGCAAGCGACTGTCCCCCACACACTAGCAGGGATACCAAACAAAGCTGC
AAGACACTCTCCCCACAGACAGACCCGTCTTAGGGCCACCCAGCTCCACG
CAGACTCCATCTCAAAGTTTTCATGCAGGCCAAGGTCACCATAATGGGCC
CTGAACTGGAGATTGTGGCTATCTTCGTGAACCCCGATATCATAGAGATA
AGCAGAGGGAGTCACTGGGCGCCAGGCGCTGACGCTAGAGAGAAAGGCTT
TATAACTAAGTAAAGCATCGCCTCCTTGATGAGCGAGGTCACGGCTCACC
GCAGGCTGCAAGCCTGACAAGATATTGCCATTTACCGCTGCGAGTAACTT
GTGGTTGGTGCCGTGGCGTGCAGCCGACTCCGCTTGCTCTCCAAGCACGC
CAAGCCGCTGCCTGTCCCTCCTCCGCACGCCAGCCAGGGCTTCCGAGACA
CCACCACACGTTTGAAGTTTTCTCGAAGGGGCTACGCACGCTGGCATCAC
CTGAGGGCCGCTGGTGCTAGCTCCTGCAAGCCCTGCAGCCCAGCCCACCC
ACCACACCAGCCGCATGTACTACTGTGGAGGAGGTATCAAGCGGCGTACT
TTGGGAAGCCACTTTGCTACTATTTTTGCTGACCCCGCGAGCGCTGCCAC
GGCCGCCTCCGCAGGTCAAGGCGCTCGCCATGGCGAACTCGCTAGAGGAC
CTGGTGGTGCCGACTAACGAACATCTCGAGGCTCAGGTGCGTGCGCATGT
TGAGCTGCGCTGCCTGAATTAAACTTGCGTTACAAAATGGTCCGGTCGTA
GAACCCCATGGTGTGTGTAGGGAGACTTGTTAACTTTACTAGGGTTGAGG
TAAGGATTAGGGTAGGGGTTAGGCTGAGTTGTGCTTTTCGTGCCCCATCA
TGGCATCAGACCTGAGTGATTTGACAGGGCTGGGGCCTGCCCTGGGTTTG
CATCAGCGTTGCTGCAGACAGAAGTACTTGAAGTAGTAGCTGAGGGCAGA
CGTGCTGTTCGCCGAGAGCGCCATCCACAGTGTGTGCTACTGACATATCT
TATGATGGTGCAATTCGGTCCCATGTGACTGGTGAATCAGGCGCAGGTGC
GGAAACGTGATTGAATGACTCAGCACATCGGGGCCAAGCACTTGAACTTC
CTAGTGCTGCGCTGGTTCATGAAAATATGACTGCAACAGGCTTACCGTAT
CTGTTGCGATGTGAACTGAATGCTGAGCCTTCCTGTGTGCAGGTCTCGTC
TGTCGTGCGCCTGCTCTTGCGCAGACGCTCTCGGCCCATCAATGGCGGCT
GATCGATCACCATAACGGCCTGAACACCCGGCATTTTAGTAATGCCAATT
ACGCTTGACGCACATGCGCGCCGCATGCCCCCCTCCCCCCCCCCCCCCCC
CCCGCTGCTCCCCTCACAGTACCAAGACATGATGCTGAGTGAGGACTACG
CATATGATGGGTCCAGGGAGTGGGGCGGCATTGTACGCAAGCTCAAGCGC
GAGGCCGCAAACTTCAACACCTAACCCTAATGTTAGGGTATGACCCCCCT
AAACCCCCGCCGGCCCCCCCTTTCGTTTCGAGTGCGCGTGTGTGTAGCAG
AGACCAGTGGTGTACAAAGGCACGCTCGGCAAAGTAAGTAGAGCAGTACA
TAGTAGGCCCCGCCCATGTGGGCTCTTCGCGCCGCGCGGCACGCAACTTC
AACTTCAACTTCCTGGGGTGCGAGACAGCGGCGCTGCGGACGGCCACGTA
CACATGTAGCACAAAAATGGCGCGTCACAGCAGCGCCGCCGCAGCCACGC
TCAGCGCCGCAGGCTCAGTCAGCACACCATCAGACATCACCCCGCTCGCT
GGCACTGTCGTTTCAAGCGCCTGGTTTTTGGCGGTGGTGCAGGAGGTGCG
TAGCAATGGCAGCGCCGCGCGCCGAACGCGGCGATAGTTGAAGTGACGTG
CCCCTTTCACGCCGCAAGTTTGTTCACAGAGTATTATTTGTGCCCCCGTG
GAGTGGCGTGCGGGCTCCTGTGTATGGCTGTCAATACTGTCGGGCGTAAT
GACATACCGTTGGGACTCTTGTTTTCGCTGCGCTTGCCGGATGTAATCAG
ACTGCTTTGGTGCCAG
back to top

Coding sequence (CDS) from alignment at Contig_31:414893..424308-

>mRNA_7384 ID=mRNA_7384|Name=jgi.p|Trimin1|348781|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1008bp|location=Sequence derived from alignment at Contig_31:414893..424308- (Tribonema minus UTEX_B_3156 )
ATGGTGCTGCCGGAGCATGCTCACGGGGCCAATCCGATGGGTGTGTCAGC
TGCAGAGTGGGAGAGCAGGGTGGAAGCCGCAGCAGTGGCGCGCGCGCTGC
ACCTGTACGGCTTCAGCGGCGACCTCGCGGCAACGACCATGCGCGCGCGC
CGCACCTCACTGCAGGCGCGCGCGCTGCACCTGTACGGCTTTGGCGACGA
CCTCGCGGCGCAGTGCGTCATGGTGCGGCTGCGCGGACACCCCGAGGAGA
TGCTCATGGTGGAGTGGGGCGTCTTCTTTGAAGAGGTGACGGCCAGCTTC
GGCCTCGTGCGCGTGGGGTTCGACGGCACGCTGATCGACTCTGTCACCGC
GGAGCGGACGCCCGCGACGGCGAGCGTCGTCAACATGGGCTGCCTGCCCG
TCGCGGTGCCTATATTCCGGGAGCGGCCAGAGGTCAACGTGATACTGCAC
ACGCACCCGCACGCGGTCATGGCTGTGGCGGCGACCAAAGCGGGACTGCT
GCCGTTGAGCCAAGCCGCCTTCATGTTCCACGGCGTGGCCGTGGCCGCCA
CCAAGGCAGGGCTGCTGCCGCTGAGCCAGGCTGCCTTCATGTTTCACGGC
GTGGTGACGACGTACAAGTACGACTTCTCCTACGGCGGCGACTTTGAGGG
CGCCATGGCCAACGGCTTCAAGGGCTTCACCAGAGCCATGCTGCTGGAGC
ACCACGGCATGTACACGGTCGGCCGCACCGCCGCGGAGGCATTCTTCGTG
ACCTTCTACATAAATCAGGCCTGCGAGGTGCAGGCCAAGGTCACCATAAT
GGGCCCTGAACTGGAGATTGTGGCTATCTTCGTCAAGGCGCTCGCCATGG
CGAACTCGCTAGAGGACCTGGTGGTGCCGACTAACGAACATCTCGAGGCT
CAGTACCAAGACATGATGCTGAGTGAGGACTACGCATATGATGGGTCCAG
GGAGTGGGGCGGCATTGTACGCAAGCTCAAGCGCGAGGCCGCAAACTTCA
ACACCTAA
back to top