mRNA_7382 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|164426
Unique Name	mRNA_7382
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YXK1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK1_9STRA)

HSP 1 Score: 518 bits (1333), Expect = 5.160e-186
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 1

Query:    1 QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEYAADGVKGKGXXXXXHGTQ 741
            QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEYAADGVKGKGXXXXXHGTQ
Sbjct:    1 QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEYAADGVKGKGXXXXXHGTQ 247

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YW31_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW31_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.220e-99
Identity = 134/228 (58.77%), Postives = 173/228 (75.88%), Query Frame = 1

Query:    4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 687
            VVLV+Q  ++DY +LQ +G+GRYD  LN FID WK DGNRRL IRPMHEFNGDWY WGT+RGG NSK  FKRA+ HV+ +F++RGAN  MQL+YNC +  +D + F +WYPG + VD++LCSAYNR+G++     WE+F++VFG GY +MA++PG K LG+ E G+T WGG  K  WI DAF  LV +YTRV+E  WLL+NK+G  DW+LNT  +V AFG  MRK+E+
Sbjct:   16 VVLVVQFDTYDYTNLQEIGDGRYDASLNQFIDAWKDDGNRRLSIRPMHEFNGDWYPWGTFRGGGNSKDNFKRAFQHVAGVFKRRGANVKMQLAYNCDSAQNDGSPFADWYPGDDVVDIILCSAYNRSGLEG--HGWESFDEVFGGGYDRMASIPGNKPLGLGETGSTDWGG-DKPAWISDAFNQLVYKYTRVQECHWLLENKEG--DWDLNTDGDVWAFGDGMRKFEF 238

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YVC0_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC0_9STRA)

HSP 1 Score: 298 bits (762), Expect = 6.890e-99
Identity = 135/228 (59.21%), Postives = 171/228 (75.00%), Query Frame = 1

Query:    4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 687
            VVLV +     Y +LQA+G+G++D  LN FID+WKADGNR++ IRPMHEFNGDWY WGTYR G NS+A FKRA+ HV+ +F+ RGANA  QL YNCVNP +D TSF  W+PG + VDM+LCS YNRAG+DS+HQ W++F  V+  GY +MAAL G K LGVAE  +T+W  +SK QWI+DAF ALVN++TRVE+  W L NKDG+  W LN+  E  AFG S+ +Y +
Sbjct:   34 VVLVTEFIDGSYANLQAIGDGKFDWALNKFIDDWKADGNRQVWIRPMHEFNGDWYSWGTYRNG-NSQALFKRAFQHVAYVFKNRGANAKFQLGYNCVNPRNDGTSFSNWWPGGDVVDMILCSGYNRAGLDSNHQSWQSFSDVYSSGYYKMAALDGGKPLGVAETSSTTWQSYSKPQWIKDAFNALVNKFTRVEQCNWFLINKDGN--WGLNSDDERHAFGDSINQYSW 258

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YS57_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS57_9STRA)

HSP 1 Score: 282 bits (722), Expect = 1.340e-90
Identity = 132/226 (58.41%), Postives = 162/226 (71.68%), Query Frame = 1

Query:    4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
            VVL+ +     Y  LQA+G+G +D  LN FIDEW+ADGNR + IRPMHEFNGDWY  GTYR G NS   FKRAY HV  +FR RGANA  QL+YNC N  +D  SF  W+PG   VDMV+CS YNRAG+D+DHQKW++F  V+  GY +MAALPG K LG+AEM +T+W  +SK QWIRDAF A+V ++TRV +  W L NK+G  DW LN+ +E  AFG S+ KY
Sbjct:  107 VVLMTEFDDGSYVDLQAIGDGAFDSYLNKFIDEWQADGNRTVWIRPMHEFNGDWYPCGTYRTG-NSSDKFKRAYRHVVSVFRNRGANAKFQLAYNCDNARNDSKSFGVWWPGKYAVDMVVCSGYNRAGLDADHQKWQSFSDVYSSGYNKMAALPGLKPLGIAEMSSTTWQSYSKPQWIRDAFDAVVTKFTRVRQLNWFLINKEG--DWGLNSDAERQAFGDSVNKY 329

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YT60_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT60_9STRA)

HSP 1 Score: 273 bits (699), Expect = 4.440e-89
Identity = 127/217 (58.53%), Postives = 159/217 (73.27%), Query Frame = 1

Query:   37 YRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKYEY 687
            Y +LQ + +G +D QLN FID+  + GN+++ IR +HEFNGDWY WGTYR G N    FKRA+ HV  +FR RGAN   QL+YNC NPNDD  SF +WYPG + VDM+LCS YNRAG+DSDH  W++F +VF  GY +MA+L G K LGVAE  +TSWGG  KAQWIRDAF A+VNQ+TRVE+  W L NK  +GDW+LN+ SE  AFG S+ +Y +
Sbjct:   63 YSNLQQIIDGAFDGQLNGFIDDMMSHGNQQMWIRHLHEFNGDWYPWGTYRDG-NDTDTFKRAFRHVVDVFRGRGANVKFQLAYNCDNPNDDGKSFHDWYPGGDVVDMILCSGYNRAGVDSDHTSWQSFSEVFSSGYYKMASLDGGKPLGVAETSSTSWGG-DKAQWIRDAFDAVVNQFTRVEQCNWFLINK--AGDWDLNSDSERHAFGDSLNEYSW 275

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A836CGL5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGL5_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.330e-82
Identity = 121/229 (52.84%), Postives = 160/229 (69.87%), Query Frame = 1

Query:    1 QVVLVIQ-LRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTS-FKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
            Q V+V++ L +  + +L+ +  G YDK L  F+DE   DGNR + +RP+HEFNGDWY WGTYRGG N+K  FKRA+ HV  +   +GAN   QL+YNCVN  +DQT+ F +W+PG ++VDMV+CS YNRAG D+DHQ+W TF +VFG  Y+QM  LPG K LGV E    ++  + KAQWIRDAF   VN Y R+E   W LQNK+  G W+LN+  E+AAFG+S+ +Y
Sbjct:  118 QSVMVMEFLDATRHTNLKQIANGLYDKYLYKFVDELMDDGNREVWVRPLHEFNGDWYPWGTYRGGDNTKRMFKRAWRHVHWILTNKGANIKFQLAYNCVNGQNDQTTPFLDWWPGEQYVDMVVCSGYNRAGSDADHQQWLTFPEVFGAAYEQMLTLPGMKPLGVGETSCNNFEDNDKAQWIRDAFYDFVNTYPRIEHVTWFLQNKN-DGRWDLNSPEEIAAFGESLIEY 345

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YWE9_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWE9_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.670e-78
Identity = 120/228 (52.63%), Postives = 149/228 (65.35%), Query Frame = 1

Query:    1 QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVN-PNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
            +VVLV+Q       +L+ +G+G YDK L  F DE   DGNR + +RPMHEFNGDWY WGTY GG+N+   F RAY HV ++   +GAN   QL YNCVN  ND +T F  W+PG + VDMV+CSAYNRAG D  H +W+T+  VF  GY QMAALP    LGV EMGT    G  KA WIRDAF A    Y RVE+  W L++KD  G+W+LN+  E+ AF  S+ +Y
Sbjct:   76 KVVLVVQFLDTLTTNLKQIGDGLYDKYLYKFADELIKDGNREVWVRPMHEFNGDWYPWGTYMGGTNTIQNFIRAYRHVYQVLTAKGANIKFQLGYNCVNGANDKKTPFSAWWPGDDVVDMVVCSAYNRAGTDQFHTQWQTWPDVFQLGYDQMAALPTSAPLGVGEMGTVGMAGEDKAGWIRDAFAAFPTLYPRVEQITWFLEDKD-DGEWDLNSADEIEAFRDSLLQY 302

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A836CJI7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJI7_9STRA)

HSP 1 Score: 250 bits (638), Expect = 9.570e-76
Identity = 117/214 (54.67%), Postives = 144/214 (67.29%), Query Frame = 1

Query:   43 SLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTS-FKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
            +LQ +G+G YD  L  FIDE K DGNR + IRPMHEFNGDWY WGTY GG+N+   F RA+ H+  +F  + AN   QL+YNC N  DD T+ F  W+PG E+VDMV+CS YNRAG D +H +W TF+ V+   Y QMAALPG K LGV EM    +G + KAQWIRDAF      +TRV +  W LQNKD  G W+LNT  E+ AFG  +R+Y
Sbjct:   98 NLQEIGDGLYDDYLYQFIDELKDDGNRAVWIRPMHEFNGDWYPWGTYHGGTNTIDNFIRAWQHIHDVFTVKKANVKFQLAYNCDNAQDDVTTPFTAWWPGDEYVDMVVCSGYNRAGSDENHMEWLTFQDVYANAYNQMAALPGLKPLGVGEMSCNDFGDYDKAQWIRDAFADFDTTFTRVTQVTWFLQNKD-DGRWDLNTPDEIQAFGDCLREY 310

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835YZR6_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR6_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.580e-75
Identity = 114/192 (59.38%), Postives = 141/192 (73.44%), Query Frame = 1

Query:    4 VVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRV 579
            VVLV +     Y +LQA+G+G +D  LN FIDEWKADGNR + IRPMHEFNGDWY WGTYR G N +A F+RA+ HV+ +F+ RGA A MQLSYNC N   +  +F EW+PG + VDMVLCS YNRAG DS H  W++F  VF  GY +MAAL G K LGVAE  +T+W  +SK QWI+DAF A+VN++TR+
Sbjct:  325 VVLVPEFYDGSYANLQAIGDGAFDSYLNKFIDEWKADGNRAMWIRPMHEFNGDWYSWGTYRSG-NDRAKFQRAFKHVAYVFKNRGAQAKMQLSYNCDNARGENRNFTEWFPGTDVVDMVLCSGYNRAGTDSYHMSWKSFTDVFTPGYNRMAALSGNKPLGVAETSSTTWQSNSKPQWIKDAFYAVVNKFTRI 515

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BLAST of jgi.p|Trimin1|164426 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.330e-74
Identity = 118/229 (51.53%), Postives = 154/229 (67.25%), Query Frame = 1

Query:    1 QVVLVIQLRSHDY-RSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHEFNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNPNDDQTS-FKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQMAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLLQNKDGSGDWNLNTRSEVAAFGQSMRKY 681
            QVV+V +   ++   +L  +G G+YD  L  F+DE KADGN+ + IRPMHEFNGDWY WGTY GG N+K  F RA+ HV  +F  + AN   QL+YNC N  DD T+ F +W+PG  +VDMV+CS YNRAG D +H +W TF+ V+G  Y+QM ALPG K LGV EM    + G+ KAQWI DAF   VN Y RV++  W LQNK+G G W+LN+  ++AAF   ++ Y
Sbjct: 1086 QVVMVTEFLDNELLTNLWQIGSGKYDDYLYQFMDEHKADGNQEVWIRPMHEFNGDWYPWGTYHGGFNTKKNFIRAWRHVHDVFTVKKANVKFQLAYNCDNGQDDVTTPFTDWWPGMNYVDMVVCSGYNRAGTDENHMEWLTFQDVYGAAYEQMLALPGYKPLGVGEMSCNDFEGYDKAQWITDAFYDFVNTYPRVKQVTWFLQNKEGDGRWDLNSPEQIAAFANGLKLY 1314

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|164426 vs. uniprot

BLAST of jgi.p|Trimin1|164426 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YXK1_9STRA	5.160e-186	100.00	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YW31_9STRA	1.220e-99	58.77	Glycoside hydrolase superfamily (Fragment) n=1 Tax...	[more]
A0A835YVC0_9STRA	6.890e-99	59.21	Glycoside hydrolase superfamily (Fragment) n=1 Tax...	[more]
A0A835YS57_9STRA	1.340e-90	58.41	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YT60_9STRA	4.440e-89	58.53	Glycoside hydrolase superfamily (Fragment) n=1 Tax...	[more]
A0A836CGL5_9STRA	1.330e-82	52.84	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YWE9_9STRA	1.670e-78	52.63	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A836CJI7_9STRA	9.570e-76	54.67	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YZR6_9STRA	3.580e-75	59.38	GH26 domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A835Z6S0_9STRA	1.330e-74	51.53	GH26 domain-containing protein n=1 Tax=Tribonema m...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_31	contig	Contig_31:406327..408642 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|164426\|e_gw1.31.125.1
CAZy	GH5,GH9
BRITE	ko00000,ko00001,ko01000
KEGG Reaction	R06200,R11307,R11308
KEGG Pathway	ko00500,ko01100,map00500,map01100
KEGG ko	ko:K01179
EC	3.2.1.4
GOs	GO:0003674,GO:0003824,GO:0004553,GO:0008810,GO:0016787,GO:0016798
Preferred name	celH
Description	Belongs to the glycosyl hydrolase 26 family
COG category	G
Max annot lvl	186801\|Clostridia
EggNOG OGs	COG4124@1\|root,COG4124@2\|Bacteria,1U8S3@1239\|Firmicutes,24CGR@186801\|Clostridia,36HBM@31979\|Clostridiaceae
Evalue	1.43e-29
Seed ortholog	272562.CA_C2556
Hectar predicted targeting category	other localisation
TranscriptId	164748
Track	FilteredModels1
ProteinId	164426

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|164426	gene_7382	Tribonema minus UTEX_B_3156	gene	Contig_31 406327..408642 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_7382_1	exon_7382_1	Tribonema minus UTEX_B_3156	exon	Contig_31 406327..406602 +
exon_7382_2	exon_7382_2	Tribonema minus UTEX_B_3156	exon	Contig_31 407030..407124 +
exon_7382_3	exon_7382_3	Tribonema minus UTEX_B_3156	exon	Contig_31 407670..407885 +
exon_7382_4	exon_7382_4	Tribonema minus UTEX_B_3156	exon	Contig_31 408486..408642 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_7382	CDS_7382	Tribonema minus UTEX_B_3156	CDS	Contig_31 406327..406602 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|164426	Trimin1\|164426\|e_gw1.31.125.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_31 406327..408642 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_31:406327..408642+
coding sequence from alignment at Contig_31:406327..408642+

spliced messenger RNA

>mRNA_7382 ID=mRNA_7382|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_31:406327..408642+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTCGTCCTCGTCATCCAGCTGCGCTCGCACGACTACCGCTCCCTTCA
GGCGGTCGGCGAGGGCCGCTACGACAAGCAGCTCAACGCCTTCATCGACG
AGTGGAAGGCGGACGGCAACCGCCGCCTCGGCATCCGCCCCATGCACGAG
TTCAACGGCGACTGGTACGAGTGGGGCACGTACCGCGGGGGGTCCAACTC
CAAGGCCGCGTTCAAGCGCGCGTACACGCACGTCTCGCGCCTCTTCCGGA
AGCGCGGCGCGAACGCCGTCATGCAGCTGTCGTACAACTGTGTCAACCCC
AACGACGACCAGACAAGCTTCAAGGAGTGGTACCCTGGAGCGGAGCACGT
GGACATGGTCCTCTGCAGCGCCTACAACAGGGCCGGCATCGACAGCGACC
ACCAGAAGTGGGAGACCTTCGAGCAGGTCTTCGGCTGGGGCTACAAGCAG
ATGGCGGCGCTGCCGGGGCGCAAGCGCCTCGGCGTCGCCGAGATGGGCAC
AACGTCGTGGGGCGGACACAGCAAGGCGCAGTGGATACGCGACGCATTCA
AGGCGCTCGTCAACCAGTACACGCGCGTGGAGGAGGGCTTCTGGCTGCTG
CAGAACAAGGACGGGTCCGGCGACTGGAACCTCAACACGCGCAGCGAAGT
CGCCGCGTTCGGCCAGAGCATGCGCAAGTACGAGTACGCAGCCGACGGCG
TGAAGGGCAAGGGCGGCGGCGGCGGCGGACACGGTACGCAGTAA

protein sequence of jgi.p|Trimin1|164426

>Trimin1|164426|e_gw1.31.125.1 ID=Trimin1|164426|e_gw1.31.125.1|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
QVVLVIQLRSHDYRSLQAVGEGRYDKQLNAFIDEWKADGNRRLGIRPMHE
FNGDWYEWGTYRGGSNSKAAFKRAYTHVSRLFRKRGANAVMQLSYNCVNP
NDDQTSFKEWYPGAEHVDMVLCSAYNRAGIDSDHQKWETFEQVFGWGYKQ
MAALPGRKRLGVAEMGTTSWGGHSKAQWIRDAFKALVNQYTRVEEGFWLL
QNKDGSGDWNLNTRSEVAAFGQSMRKYEYAADGVKGKGGGGGGHGTQ*

mRNA from alignment at Contig_31:406327..408642+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7382 ID=mRNA_7382|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2316bp|location=Sequence derived from alignment at Contig_31:406327..408642+ (Tribonema minus UTEX_B_3156 )
CAGGTCGTCCTCGTCATCCAGCTGCGCTCGCACGACTACCGCTCCCTTCA
GGCGGTCGGCGAGGGCCGCTACGACAAGCAGCTCAACGCCTTCATCGACG
AGTGGAAGGCGGACGGCAACCGCCGCCTCGGCATCCGCCCCATGCACGAG
TTCAACGGCGACTGGTACGAGTGGGGCACGTACCGCGGGGGGTCCAACTC
CAAGGCCGCGTTCAAGCGCGCGTACACGCACGTCTCGCGCCTCTTCCGGA
AGCGCGGCGCGAACGCCGTCATGCAGGTGCGTCACAATTGAAGCTACTTA
TCTCTCGCCTCAAGCGGCCGCGGCGGCGCCGCCGATCGCCCCCCCTGATC
TGTTCATGGCACTTTGAAGTGCACTGCAGTGCTTGCTGACTATGAGCTTG
TGCGGGGTGAGAGGTACCTGGGCTCCAGAGGCAACTTCACAATGCGCGAG
TACCGGGTGTCAGGTGTGGCGTTAGCGGCGGGAATTGATAGCTGCATGTA
CCGCTGCTTGTAGCATGTGTGCTGAGTATCCCTGAGACGTGCCGTCTCTC
ATCCCCTCTCCATCTGCTCTTTACTGTCCTGCGCAGCTGATGCTTGCGTC
AACAACTTGTGCCATGAGTTATTGCCCCTGACCTCCCCCCCCCGCCCCCC
CCTCTGCGTGCACGCATTGTGCACCGTTGCCCTTGCCCATTTCCCCTCTG
CAGCTGTCGTACAACTGTGTCAACCCCAACGACGACCAGACAAGCTTCAA
GGAGTGGTACCCTGGAGCGGAGCACGTGGACATGGTCCTCTGCAGCGCGT
GAGTCACTGTCCACAACACTCAGTCATGACTGCTTGTTGTGTTGCTGTGC
AGTGCTGTGCAAAAGTTGTGTCAGCATTATGACAATGTACTTCTGCTGGT
GCGCGATGACCATTCCTGAGTAGTGGCTGCTTGTCTTGATGTCTGCGGGT
TCCATGTAAGCCGGCTCTGCAGTCAGACTGGTTGTGTGCATGCGCCCCGC
GTGGCTCAAGCGAAGAGAGAGGCTGTGCAACATTCATCAACCGGTTTGAA
AGTGGGCCCGTCTGCAGTTGCACCGTTATCGTGTGCCAGACCTTTTTGCA
GGCTGCTCTGCGGGTGCTCTCGCAACCGAGAAGCAATGCATCAACTGGTG
ACATCCCGCCTCCCTGCTACTTCAACTTTATTCTTATCATATCAGCCACC
CATGCGATACCCGCCCTACGGGGGTGCTCTGGTGACTTTTTCGAGCAGCC
ATTTCGTCGACTACCTGCCTGCAACTTCAACTTACACTTCACTCACATCG
CACCCCCCTGCCCCCCCCCCCCCGCCCCCCCGCGCCCCCGCAGCTACAAC
AGGGCCGGCATCGACAGCGACCACCAGAAGTGGGAGACCTTCGAGCAGGT
CTTCGGCTGGGGCTACAAGCAGATGGCGGCGCTGCCGGGGCGCAAGCGCC
TCGGCGTCGCCGAGATGGGCACAACGTCGTGGGGCGGACACAGCAAGGCG
CAGTGGATACGCGACGCATTCAAGGCGCTCGTCAACCAGTACACGCGCGT
GGAGGAGGGGTGAGTGAGCGCGCGACACGAAGGGGGGGCGGGGTTGTCGG
GGGAATGTGCGTCAGTAGCTCGCACGTGCGCGCGCTGGGGGTGGGAGAGG
GGGGGGGGGGGGGGGGGGGTTCAGGAGGAGGTGTTGCGCGTTACAGTAGC
ATGGAGGCGCTCAACCAGTACACGCGCGTGGAGGAGGGTGAGTGAGGGCG
CGTTGCGCGCGCGAGGGGGTGGTGGGGGGGAGGGGGTGGGGGGGGTTCAG
GGGGTGTGCTGCGTGTCACAGTAGCGTGGAGCGGACATGTGACACCTATT
GCTCATGAGCAATCCCGACCACACAGATGCAGTGCCATTAGGTACTCCCG
TTGGCATTTGGATTCCATCCAGGTCAGCTCGCACACATGTCTCTGACACC
TTTGTTACGCGCTCGCAGACAAAGCGATTCCTCAAATTTTCTTGACGACC
GCTTGCCAACAAGTAGCTAGTCAGCTGACGCTTGCCTTGCATGCCTCCCT
TTCTGCCCACGCGTGATGCCTCCATCCTAGCCGACCGCTTGCCATCAAGT
AGCAGCTCAGCTGACACATGGCTTGAACCCCCCCCCCCTTTCTCCCCCCG
CGCGCGCAGCTTCTGGCTGCTGCAGAACAAGGACGGGTCCGGCGACTGGA
ACCTCAACACGCGCAGCGAAGTCGCCGCGTTCGGCCAGAGCATGCGCAAG
TACGAGTACGCAGCCGACGGCGTGAAGGGCAAGGGCGGCGGCGGCGGCGG
ACACGGTACGCAGTAA

Coding sequence (CDS) from alignment at Contig_31:406327..408642+

>mRNA_7382 ID=mRNA_7382|Name=jgi.p|Trimin1|164426|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_31:406327..408642+ (Tribonema minus UTEX_B_3156 )
CAGGTCGTCCTCGTCATCCAGCTGCGCTCGCACGACTACCGCTCCCTTCA
GGCGGTCGGCGAGGGCCGCTACGACAAGCAGCTCAACGCCTTCATCGACG
AGTGGAAGGCGGACGGCAACCGCCGCCTCGGCATCCGCCCCATGCACGAG
TTCAACGGCGACTGGTACGAGTGGGGCACGTACCGCGGGGGGTCCAACTC
CAAGGCCGCGTTCAAGCGCGCGTACACGCACGTCTCGCGCCTCTTCCGGA
AGCGCGGCGCGAACGCCGTCATGCAGCTGTCGTACAACTGTGTCAACCCC
AACGACGACCAGACAAGCTTCAAGGAGTGGTACCCTGGAGCGGAGCACGT
GGACATGGTCCTCTGCAGCGCCTACAACAGGGCCGGCATCGACAGCGACC
ACCAGAAGTGGGAGACCTTCGAGCAGGTCTTCGGCTGGGGCTACAAGCAG
ATGGCGGCGCTGCCGGGGCGCAAGCGCCTCGGCGTCGCCGAGATGGGCAC
AACGTCGTGGGGCGGACACAGCAAGGCGCAGTGGATACGCGACGCATTCA
AGGCGCTCGTCAACCAGTACACGCGCGTGGAGGAGGGCTTCTGGCTGCTG
CAGAACAAGGACGGGTCCGGCGACTGGAACCTCAACACGCGCAGCGAAGT
CGCCGCGTTCGGCCAGAGCATGCGCAAGTACGAGTACGCAGCCGACGGCG
TGAAGGGCAAGGGCGGCGGCGGCGGCGGACACGGTACGCAGTAA