mRNA_7378 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A836CEC6_9STRA (Vacuolar protein sorting-associated protein 13A N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC6_9STRA) HSP 1 Score: 195 bits (495), Expect = 4.250e-63 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 297 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE Sbjct: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 99
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI) HSP 1 Score: 119 bits (299), Expect = 2.560e-29 Identity = 54/98 (55.10%), Postives = 79/98 (80.61%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWD 294 MFERL++SILT +LGEYVE S+F+ E+++LG+W G LVLE+M +K +++D +LPL LRHG IGRL+++IP + L DPI+ ++ V++VV PK+EWD Sbjct: 1 MFERLVSSILTRLLGEYVEDSTFNTESVKLGIWRGYLVLEDMHIKKTLMDMLELPLALRHGIIGRLQIQIPWSTLNKDPILVDVDRVFLVVEPKFEWD 98
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A482SWM9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWM9_9ARCH) HSP 1 Score: 97.4 bits (241), Expect = 2.740e-22 Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEW 291 MFE+ L+ IL +L ++VE E +++GVWSG +VLEN+ LK S+ + ++P+ L +G IGRLEL IP +RLG +P+ L+ +Y++V PKYEW Sbjct: 1 MFEQGLSFILKKLLRDFVEDGDNLHEKVQVGVWSGLIVLENLVLKNSIFNLLEVPVALSYGYIGRLELHIPWSRLGYEPVTVVLDKIYILVEPKYEW 97
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A151Z548_9MYCE (Vacuolar protein sorting-associated protein 13 family protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z548_9MYCE) HSP 1 Score: 95.9 bits (237), Expect = 6.000e-21 Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE--WDE 297 MFERL+A +LT LGEY+++ + E +++G+WSGN+ LEN+ LK L+ LP ++ G +G+L LKIP L T+P++ +E++Y+V PK E WDE Sbjct: 1 MFERLVADLLTRYLGEYIKT--LNTENLKIGIWSGNVSLENLELKKRALEKFNLPFTIKEGFLGKLSLKIPWNNLKTEPVIVIVENLYIVASPKSENIWDE 99
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A4D9D6R4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6R4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.750e-20 Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 297 + ++L +LT VLG+Y++ F ++T+R+G+W G++ L N+ K VLDP LPL LR GRIG +E++IP +LG ++ LE V+V+ KY+W++ Sbjct: 2 VLSQILTPLLTKVLGDYLKPECFQEDTLRVGLWRGHVELFNVFFKEDVLDPLGLPLTLRFGRIGHMEVQIPWNQLGRKAMIVKLEQVHVLAYAKYQWED 100
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: T1HV00_RHOPR (Uncharacterized protein n=1 Tax=Rhodnius prolixus TaxID=13249 RepID=T1HV00_RHOPR) HSP 1 Score: 93.6 bits (231), Expect = 3.750e-20 Identity = 44/96 (45.83%), Postives = 69/96 (71.88%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE 288 +FE L+ +L LGEYVE+ SQ +++G+W G++VLEN+ LK S LD LP++ +GR+G+L LKIP RL TDP++A+++ +Y++VVP + Sbjct: 2 VFESLVTDLLNKYLGEYVENLDSSQ--LKVGIWGGDVVLENLILKQSALDELDLPVKTLYGRLGKLTLKIPWKRLYTDPVIASVDTLYLLVVPNQD 95
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A8J4PSJ7_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PSJ7_9MYCE) HSP 1 Score: 93.6 bits (231), Expect = 3.890e-20 Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE--WDE 297 MFER +A +LT LGEY+++ + E +++G+WSGN+ LEN+ LK + L+ LP ++ G +G+L LKIP L T+P++ ++++Y+ VPK WDE Sbjct: 1 MFERFVADLLTRYLGEYIKT--LNTENLKIGIWSGNVSLENLELKKNALEKFNLPFTIKEGFLGKLSLKIPWNNLKTEPVIVVIDNLYITAVPKSSNLWDE 99
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: W7U785_9STRA (Vacuolar protein sorting-associated protein vps13 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U785_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 7.250e-20 Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYEWDE 297 + ++L +LT VLG+Y++ F ++T+R+G+W G++ L N+ LK VLD LPL LR GRIG +E++IP +LG ++ LE V+V+ KY+W++ Sbjct: 2 VLSQILTPLLTKVLGDYLKPECFQEDTLRVGLWRGHVELFNVYLKEDVLDTLGLPLTLRFGRIGHVEVQIPWNQLGRKAVIVKLEQVHVLAYAKYQWED 100
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: UPI0009B344CB (vacuolar protein sorting-associated protein 13C-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=UPI0009B344CB) HSP 1 Score: 84.0 bits (206), Expect = 3.920e-19 Identity = 40/93 (43.01%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVP 279 +FE L++ +L +G+YVE+ SQ +++G+W GN+VLEN+ +K + L +P +++ G+IG+L LKIP L D +VATLE +Y++VVP Sbjct: 2 VFESLVSDLLNRFIGDYVENLDKSQ--LKIGIWGGNVVLENLKVKENALSEFNVPFKVKAGQIGKLTLKIPWKNLYNDAVVATLEGLYLLVVP 92
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Match: A0A069DYI3_9HEMI (Putative vacuolar protein n=2 Tax=Panstrongylus TaxID=65342 RepID=A0A069DYI3_9HEMI) HSP 1 Score: 89.4 bits (220), Expect = 1.190e-18 Identity = 42/96 (43.75%), Postives = 67/96 (69.79%), Query Frame = 1 Query: 1 MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHVYVVVVPKYE 288 +FE L+ +L LGEYVE+ SQ +++G+W G++VLE++ LK S LD LP++ GR+G+L LKIP RL TDP++A+++ +Y++ VP + Sbjct: 2 VFESLVTDLLNKYLGEYVENLDSSQ--LKVGIWGGDVVLEDLVLKQSALDELDLPVKTLFGRLGKLTLKIPWKRLYTDPVIASVDTLYLLAVPNQD 95 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133014 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7378 ID=mRNA_7378|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=297bp|location=Sequence derived from alignment at Contig_31:314573..315476+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTTGAAAGACTGCTTGCGAGCATACTCACCAGCGTCCTGGGTGAGTAback to top protein sequence of jgi.p|Trimin1|133014 >Trimin1|133014|gw1.31.20.1 ID=Trimin1|133014|gw1.31.20.1|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=99bp MFERLLASILTSVLGEYVESSSFSQETIRLGVWSGNLVLENMTLKASVLDback to top mRNA from alignment at Contig_31:314573..315476+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7378 ID=mRNA_7378|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=904bp|location=Sequence derived from alignment at Contig_31:314573..315476+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_31:314573..315476+ >mRNA_7378 ID=mRNA_7378|Name=jgi.p|Trimin1|133014|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=297bp|location=Sequence derived from alignment at Contig_31:314573..315476+ (Tribonema minus UTEX_B_3156 )back to top |