mRNA_7374 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164370
Unique NamemRNA_7374
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.420e-83
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRGTGXXXXXXXHMPPLHGDEHAWDRR 378
            MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRGTGXXXXXXXHMPPLHGDEHAWDRR
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRGTGXXXXXXXHMPPLHGDEHAWDRR 126
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BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.510e-27
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQ---RAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGR 300
            MGLPL LP DA  TLYVEGIP D SERE+AHIFRPFPGY SLR+R K       A     A+CFVEF+++Y A++AK+   DY++D+ D  +  L + YA+ +
Sbjct:  175 MGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277
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BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: I3SXG7_LOTJA (RRM domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SXG7_LOTJA)

HSP 1 Score: 100 bits (249), Expect = 1.330e-23
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   19 LPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR 294
            LPPDASSTLYVEG+P D+++REVAHIFRPF GY+ +R+  KES    G    +CFV+F+N   A+ A  A   Y++D  DP++G L + ++R
Sbjct:  134 LPPDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFENPACAATALSALQGYKVDELDPESGHLRLQFSR 225
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BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: A0A6J1JRD4_CUCMA (RNA-binding protein 2-like n=4 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1JRD4_CUCMA)

HSP 1 Score: 100 bits (248), Expect = 2.760e-23
Identity = 52/101 (51.49%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 LPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARG---RRGTG 312
            LPPDAS+TLYVEG+P D+S REVAHIFRPF GY+ LR+  KES    G    +CFV+F NA  A+ A  A   Y++D  DP +  L + ++R    R GTG
Sbjct:  152 LPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANAACAATAMSALQGYKMDEQDPDSNYLRLQFSRHPGPRSGTG 252
[Close]
BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: V4KAG6_EUTSA (RRM domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KAG6_EUTSA)

HSP 1 Score: 99.0 bits (245), Expect = 5.920e-23
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   13 LQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR------GRRG 306
            L+LPPDAS+TL+VEG+P + S REVAHIFRPF GY+ +R+  K+S + +G    +CFV+FDN+  A+ A+ A   Y++D  DP +  L + ++R      G+RG
Sbjct:  139 LRLPPDASNTLFVEGLPSNCSRREVAHIFRPFLGYREVRLVTKDSKQRNGDPIVLCFVDFDNSACAATARTALQGYRMDEDDPDSKILQIQFSRNPGPRPGQRG 242
[Close]
BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: A0A7I4E1R2_PHYPA (RRM domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4E1R2_PHYPA)

HSP 1 Score: 99.0 bits (245), Expect = 8.930e-23
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:   19 LPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR--GRRG 306
            LPPDASSTL+V+G+P+D S RE AHIFRPF G++ +R+ HK++ R DG +  +CFVEF +A  A+ A  A   Y+ D TD ++  L + +AR  G RG
Sbjct:  137 LPPDASSTLFVDGLPEDCSRREAAHIFRPFIGFKEVRLVHKDAKRADGGKVVLCFVEFADARCAATALEALQGYKFDETDHESYVLRLTFARHPGPRG 234
[Close]
BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA)

HSP 1 Score: 95.9 bits (237), Expect = 1.030e-22
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   13 LQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR------GRRG 306
            L+LPPDASSTL+VEG+P D S REVAHIFRPFPGY+ +R+  K+S   +G    +CFV+F+N   A+ A+ A   Y++D  +  +  L + ++R      G+RG
Sbjct:   45 LRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKHRNGDLIILCFVDFENPACAATARNALQGYRMDEEERDSKILRIQFSRNPGPRPGQRG 148
[Close]
BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: UPI00053C0C6D (RNA-binding protein 2-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0C6D)

HSP 1 Score: 98.2 bits (243), Expect = 1.670e-22
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   13 LQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR 294
            L LPPDAS+TLYVEG+P D   REVAHIFRPF GY+ +R+ +KE     G    +CFV+F+    A+ A  A   YQ+D TDP++ +L + ++R
Sbjct:  155 LPLPPDASNTLYVEGLPPDCKRREVAHIFRPFVGYREVRLVNKEDKHRGGDTVLLCFVDFETPACAATAMSALRGYQVDETDPESKSLRLQFSR 248
[Close]
BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: A0A2K1KI41_PHYPA (RRM domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KI41_PHYPA)

HSP 1 Score: 99.0 bits (245), Expect = 1.670e-22
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:   19 LPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR--GRRG 306
            LPPDASSTL+V+G+P+D S RE AHIFRPF G++ +R+ HK++ R DG +  +CFVEF +A  A+ A  A   Y+ D TD ++  L + +AR  G RG
Sbjct:  174 LPPDASSTLFVDGLPQDCSRREAAHIFRPFIGFKEVRLVHKDAKRADGGKVVLCFVEFADARCAATALEALQGYKFDETDHESYVLRLTFARHPGPRG 271
[Close]
BLAST of jgi.p|Trimin1|164370 vs. uniprot
Match: A0A7S0D2F8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D2F8_MICPS)

HSP 1 Score: 100 bits (249), Expect = 2.250e-22
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:   13 LQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYAR 294
            ++LPPDASSTLYVEG+P DA+ RE+AH+FRPF G++S R+  KE+ RG      +CF EFD+A  AS AK     Y IDR  P++G L V +A+
Sbjct:  344 IRLPPDASSTLYVEGVPADATRREMAHVFRPFEGFRSTRLVAKENVRGP-----LCFAEFDDARCASKAKDTLQGYLIDRDAPESGALRVSFAK 432
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164370 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z002_9STRA1.420e-83100.00RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5L4C0_9PHAE3.510e-2753.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I3SXG7_LOTJA1.330e-2351.09RRM domain-containing protein n=1 Tax=Lotus japoni... [more]
A0A6J1JRD4_CUCMA2.760e-2351.49RNA-binding protein 2-like n=4 Tax=Cucurbitaceae T... [more]
V4KAG6_EUTSA5.920e-2346.15RRM domain-containing protein n=1 Tax=Eutrema sals... [more]
A0A7I4E1R2_PHYPA8.930e-2350.00RRM domain-containing protein n=4 Tax=Physcomitriu... [more]
A0A6J0KMJ8_RAPSA1.030e-2246.15nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
UPI00053C0C6D1.670e-2248.94RNA-binding protein 2-like n=1 Tax=Tarenaya hassle... [more]
A0A2K1KI41_PHYPA1.670e-2250.00RRM domain-containing protein n=3 Tax=Physcomitriu... [more]
A0A7S0D2F8_MICPS2.250e-2253.19Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_31contigContig_31:287310..288209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164370|e_gw1.31.23.1
DescriptionRNA recognition motif
COG categoryA
Max annot lvl35493|Streptophyta
EggNOG OGs28P7S@1|root,2QVUV@2759|Eukaryota,37R9W@33090|Viridiplantae,3GK80@35493|Streptophyta
Evalue2.74e-23
Seed ortholog3218.PP1S72_124V6.1
Hectar predicted targeting categoryother localisation
TranscriptId164692
TrackFilteredModels1
ProteinId164370
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164370gene_7374Tribonema minus UTEX_B_3156 geneContig_31 287310..288209 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7374_1exon_7374_1Tribonema minus UTEX_B_3156 exonContig_31 287310..287421 +
exon_7374_2exon_7374_2Tribonema minus UTEX_B_3156 exonContig_31 287941..288209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7374CDS_7374Tribonema minus UTEX_B_3156 CDSContig_31 287310..287421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164370Trimin1|164370|e_gw1.31.23.1Tribonema minus UTEX_B_3156 polypeptideContig_31 287310..288209 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7374 ID=mRNA_7374|Name=jgi.p|Trimin1|164370|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=381bp|location=Sequence derived from alignment at Contig_31:287310..288209+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTCCCCCTGCAGCTCCCCCCCGATGCGTCGTCGACGCTGTACGT
GGAGGGCATACCGAAGGACGCGAGCGAGCGCGAGGTCGCGCACATCTTCC
GGCCGTTTCCGGGGTACCAGTCGCTACGCATACGCCACAAGGAGTCGGCG
CGCGGCGACGGCGCGCAGCGCGCCATGTGCTTCGTCGAGTTTGACAACGC
GTACCAGGCGAGCGTCGCCAAGATCGCGTGCGGCGACTACCAGATAGACC
GCACGGACCCGCAGGCGGGCACGCTCATCGTTCACTACGCGCGCGGGCGC
CGCGGCACTGGCGGCGGCGGCGGCGGCGGCGGCCACATGCCGCCGCTGCA
CGGCGACGAGCACGCGTGGGACCGGCGGTGA
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protein sequence of jgi.p|Trimin1|164370

>Trimin1|164370|e_gw1.31.23.1 ID=Trimin1|164370|e_gw1.31.23.1|Name=jgi.p|Trimin1|164370|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=127bp
MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESA
RGDGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGR
RGTGGGGGGGGHMPPLHGDEHAWDRR*
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mRNA from alignment at Contig_31:287310..288209+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7374 ID=mRNA_7374|Name=jgi.p|Trimin1|164370|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=900bp|location=Sequence derived from alignment at Contig_31:287310..288209+ (Tribonema minus UTEX_B_3156 )
ATGGGGCTCCCCCTGCAGCTCCCCCCCGATGCGTCGTCGACGCTGTACGT
GGAGGGCATACCGAAGGACGCGAGCGAGCGCGAGGTCGCGCACATCTTCC
GGCCGTTTCCGGGTGCGTCACCAGTTAATGTTGAGAAATTTGGTTCTATA
GATATATATCAGCAAATCATGAGAAATTTGGTTCTGTATATATTTTTTCG
GGAATGCAGTTGGCGAGAGGCAAAGTGCATTCAATGTGCAGCGCTCGCGA
GGTCGCACACGTGTTCCGGCCGTTTCCGGGTGCGTCACTGATTGATGTTG
AGAAATTTGGTTCTGTGGAAACGATCTAAAAAAATCGTCGAGCTCTAGGT
GACGAGGAGTGGTTGGCCGCAAGTGCCTTCCACCGATGACCGTGGTCGAT
GCTGCTGCAGTCATTGGCCGTGCGGCAAATACATTTTGGGAATGCTGTTG
GCAAGAGGCAGTAATGCGTTTGCTGTGCATTTCTGATCTATCTTGCTGCA
CCTCGTCATGTTCTCAGACATGTTTCTGATTCATTTCCGCCACAAATGCA
TGAGAAACGGTAAACAGAGCAGCTTTGACATTTCACATCCATTTTCTCAA
GGCCATTTTGCCCCCAACTGCATCTCCTCAGGGTACCAGTCGCTACGCAT
ACGCCACAAGGAGTCGGCGCGCGGCGACGGCGCGCAGCGCGCCATGTGCT
TCGTCGAGTTTGACAACGCGTACCAGGCGAGCGTCGCCAAGATCGCGTGC
GGCGACTACCAGATAGACCGCACGGACCCGCAGGCGGGCACGCTCATCGT
TCACTACGCGCGCGGGCGCCGCGGCACTGGCGGCGGCGGCGGCGGCGGCG
GCCACATGCCGCCGCTGCACGGCGACGAGCACGCGTGGGACCGGCGGTGA
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Coding sequence (CDS) from alignment at Contig_31:287310..288209+

>mRNA_7374 ID=mRNA_7374|Name=jgi.p|Trimin1|164370|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=381bp|location=Sequence derived from alignment at Contig_31:287310..288209+ (Tribonema minus UTEX_B_3156 )
ATGGGGCTCCCCCTGCAGCTCCCCCCCGATGCGTCGTCGACGCTGTACGT
GGAGGGCATACCGAAGGACGCGAGCGAGCGCGAGGTCGCGCACATCTTCC
GGCCGTTTCCGGGGTACCAGTCGCTACGCATACGCCACAAGGAGTCGGCG
CGCGGCGACGGCGCGCAGCGCGCCATGTGCTTCGTCGAGTTTGACAACGC
GTACCAGGCGAGCGTCGCCAAGATCGCGTGCGGCGACTACCAGATAGACC
GCACGGACCCGCAGGCGGGCACGCTCATCGTTCACTACGCGCGCGGGCGC
CGCGGCACTGGCGGCGGCGGCGGCGGCGGCGGCCACATGCCGCCGCTGCA
CGGCGACGAGCACGCGTGGGACCGGCGGTGA
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