mRNA_7334 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A835YYW2_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW2_9STRA) HSP 1 Score: 605 bits (1560), Expect = 3.390e-218 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 1
Query: 1 MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIRK 957
MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIRK
Sbjct: 1 MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIRK 319
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A7S4B569_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B569_CHRCT) HSP 1 Score: 184 bits (466), Expect = 3.540e-51 Identity = 138/347 (39.77%), Postives = 177/347 (51.01%), Query Frame = 1
Query: 1 MAAKKPAKKQAATKISLRGFGGTA----AKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEG-----------------------------TPGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGG-TLSPKEALAVQFRLALK 939
+A KK A TKIS +GFG AKP + GTL+ D + AL WL + G + K+ IADF GLRGVMA+++I+ G+ II +PA A+DLG +G +P SPDL T DFF+E EL MLQWPP+V E R R A K+ + +LKWA +IV+SRVLTV+ G D KLLIP IDMFNH ASS H LTGR SL+V+AG V AG Q+ I Y + + YGF+D + AD L+A + L+ T+A D+ +L TL E LA+Q RLALK
Sbjct: 83 LAQKKKGGNGAPTKISAKGFGSAVVRAKAKPGEV---------GTLLTDPAYEALRSWLSAEGASLDKVGIADFDGLRGVMAMQNIQAGEEIISIPANCALDLGTQGDDPIPPALQLLSAIATDDGRRQAYFEVLPSPDSPDLCTPDFFSEKELQMLQWPPIVREVRARSAALRKVLGSAAPTGDTRREEMAVAGGRLRELKWAAWIVLSRVLTVL-GPDGAGHKLLIPFIDMFNHRASSRHYLTGR--TDRSLRVVAGTRVAAGEQIYIVYGTEATSNAELLAHYGFIDPTAAA-ADERLVA--MNPDAVPALQATSAEADKEMLSSEPTLPRNEQLALQLRLALK 414
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: R1C564_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C564_EMIHU) HSP 1 Score: 174 bits (441), Expect = 3.260e-45 Identity = 122/314 (38.85%), Postives = 162/314 (51.59%), Query Frame = 1
Query: 118 GTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGK-----QVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIR 954
G + D + +L WL++ G + +AIADFGGLRG+MA I G+ I+ VPA+ A+DLG +G P SPDL T DF+ EA L + QWPP+ +E RRR A E +G G+ + +L+WAV++V SRVLTV +G D R KLLIP +DMFNH ASSPH L GR L+VLAGA V AG QV I Y + F+ YGFLD A + +A+L A + L++T A+D+A+L EALA+ R+ALK R
Sbjct: 33 GVALVDPAYESLRGWLEAEGAKLGAVAIADFGGLRGLMATRRIDAGEEIVAVPARCAVDLGAQGDDPLPAARALLEARARDAGGAREPYYATLPQPDSPDLCTPDFWGEATLELCQWPPLAEEVRRRAADIESA----------LGGGGEGEGGAAGEAARRELQWAVWLVQSRVLTV-QGADGRGHKLLIPWLDMFNHRASSPHRLAGR--TDGMLRVLAGAPVGAGEQVEIVYGTSGTSNAEFLGHYGFLDPAAAAADEALLRAHPHARPL---LKQTALADDEAVLAATEPGSHEALALGLRVALKRAMAR 330
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A0M0JVN2_9EUKA (Histone-lysine n-methyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVN2_9EUKA) HSP 1 Score: 165 bits (418), Expect = 1.020e-44 Identity = 127/346 (36.71%), Postives = 176/346 (50.87%), Query Frame = 1
Query: 25 KQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGV-DMRKIAIADF-GGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSP---KEALAVQFRLALKTGTIRK 957
K+ K+ RGFG AA P+ G L+ + ALY+WL S+ + +++K+ IA+F GGLRGVMAL+DI G+ I+ +PA AIDLG +G P + DL T DFF+E EL MLQWPP+V ETR+R A K + + +L+WAV+ ++SRVLTV D+ KLLIP IDMFNH S H LTGR L+V+AGA VKAG Q+ I Y + F+ YGF+D AD LL + L+ +T A+D+A L+ + +E LA+ R+ALK +++
Sbjct: 32 KKPPAKLGGRGFG--AAPPTS----------GKLLDEPRYTALYEWLRSSPLTNLKKVGIAEFEGGLRGVMALQDIMAGEEIVAIPATLAIDLGADGVDPLPAARRFLGEMHGDTDGEYAAYWAVLPPPDAADLCTPDFFSEKELQMLQWPPLVVETRKRSAQLRKALGERAPNSGTPNDVMAVAGGNMRELRWAVWTILSRVLTVADPTDLGGHKLLIPLIDMFNHRGGSKHYLTGR--TDGMLRVVAGATVKAGEQIFIKYGTDQTSNVEFVAHYGFVDPK-AETADRTLLR--MQPAMVPALKHSTLAQDEAELDALKAADGPYQEQLALGLRMALKRAALKE 360
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A7S1D8S2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8S2_CYCTE) HSP 1 Score: 160 bits (405), Expect = 1.570e-42 Identity = 117/307 (38.11%), Postives = 155/307 (50.49%), Query Frame = 1
Query: 199 IADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEG----TPGSPDLT-----------------------------------TTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRG-DDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGS-LGKRYEAQ-------------------LRETTAAEDQALLEGGTLSPKEALAVQFRLALK 939
+ D G LRGV+AL+DIKKG +I +P + AI+LG EG PG L +TDFF++ ++ LQ P +V+ET+ R + ++ I +G ++ E L+WAV+++ SRVLTV DD R +LLIP +DM NHD SPHVLTGR G LKV+AGA V AG Q+NI Y GGV +DRF+QDYGFLD EA L+A LGKR + L TT EDQA+L T S A+Q+R+ +K
Sbjct: 81 LPDGGSLRGVVALKDIKKGDVLIRIPYELAINLGQEGGDPTVPGRDLLRMYCEVMDAQSAELHDPERLAYFRMLPEFLGDDCRGSTDFFSDEAMSALQSPLIVEETKHRQVRVSRRFDQDIAADASFPKWIDGSALSEEHLRWAVWLITSRVLTVQGAVDDNRSYRLLIPFLDMCNHDRGSPHVLTGRAVPGGDLKVVAGAPVAAGDQINIGYGGGVAGNDRFLQDYGFLD----KEAGFNLVALQILGKRRMVEGVVAGRTMPATDRAAALKSLHRTTVEEDQAMLLE-TPSGDVRSALQYRIGVK 382
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A6U3YH37_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3YH37_9STRA) HSP 1 Score: 160 bits (405), Expect = 6.320e-42 Identity = 108/287 (37.63%), Postives = 151/287 (52.61%), Query Frame = 1
Query: 49 LRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADF--GGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTP-----------------------------------GSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQ---MGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSE 789
L+GFGG A S E+A G+A + S + + G +++++A+A F +RG++AL DIKKG I+++P + A+DLG E + G LT+TDFF+ L LQ P +V+ET R ++ YE + +Q N T++ L+WAV+++ SRVLTV D +L+IP +DM NHD S HVLTGR GA LKVLAG +VKAG Q+ I+Y GG+ +DRFIQDYGFLD G E
Sbjct: 82 LKGFGGGTATSSDESAT-GAAKIDKSAKALSFYNYIETNEQGGNNLKRVALATFPPANIRGLVALRDIKKGDAILDIPYELALDLGVENSDPTLPAVTLLQKYCTYLNSDGSTIDGPYMELLPEYKGRDSLTSTDFFSAEALEKLQHPLIVEETLNRREKTKQRYESDVMPNIQNFQWKDGSNSAAATLDHLQWAVWLITSRVLTVQTTDTKPANRLMIPLLDMCNHDRHSQHVLTGRAIPGARLKVLAGCNVKAGEQILISYGGGLEGNDRFIQDYGFLDVYGKDE 367
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: L1IZH7_GUITC (SET domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IZH7_GUITC) HSP 1 Score: 150 bits (379), Expect = 2.380e-39 Identity = 105/300 (35.00%), Postives = 153/300 (51.00%), Query Frame = 1
Query: 1 MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLALYQWLDSAGVDMRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT-------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILL 807
M AKK KK A +GFG AKP+ AG + I A + +QWL + G + K+AIADF GLRGV A ++I++G+ I+ +P ++LG +G P TT+F++E EL L+W V+ ET+ R+A+ YE Q+G + N + T E+ W V+ +VSRVLT+ +D K LIP IDMFNHDA+SPH L + +++AG + AG Q+N Y GG +DR IQDYGF++++ + +LL
Sbjct: 5 MMAKKSPKKGAPV---AKGFG---AKPTL-------AGKASRIDSADSERFFQWLKAGGASVSKVAIADFDGLRGVAAEKNIEEGEVIVSIPRDICLNLGSDGVNPGYAAAQLVRIEKDEERRRNGWFQPFFDMLPKYEQCDTTEFYSENELNALEWDAVIQETKSRVAMLRSTYE-----ASQVGLS-NDIKFTWEEFLWGVYQIVSRVLTIYTNEDGA-VKYLIPMIDMFNHDAASPHQL--KATRDGLFQIIAGKKIFAGQQINFPYGGGNLNNDRIIQDYGFVESSNSHDVKQLLL 282
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A448ZED2_9STRA (SET domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZED2_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.180e-37 Identity = 114/305 (37.38%), Postives = 149/305 (48.85%), Query Frame = 1
Query: 217 LRGVMALEDIKKGQCIIEVPAKSAIDLGDEGTP--------------------GSPD----------------LTTTDFFTEAELAMLQWPPVVDETR-RRIALCEKLYEDVIKMQVQMG--SAFNGKQVTVEDLKWAVFIVVSRVLTVV-RGDDVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQ-------------------LRETTAAEDQALLEGGTLSPKEALAVQFRLALKTGTIR 954
LRGV AL+ +KKG I+ +P + A++LG EG GS D L +TDFF++ L LQ P V +ETR RR + DV + G S +G VT + L WAV++V SRVLTV + +LLIP +DM NHD SPHVL+GR G LKV+AGA VK G QVNI Y GG+ +DRF+QDYGFLD + A ++ LGKR + L ET+ +D+ LLE T P A A +R+ +K R
Sbjct: 150 LRGVAALKPVKKGDAIVNIPYELAVNLGREGADPTVPAVAFLRDYCETLGSGGGSGDRAAYYSMLPPFGGADCLGSTDFFSDLALEELQAPLVAEETRTRRKKTSSRFLSDVAPLVETGGFPSWTDGSDVTEDHLAWAVWLVTSRVLTVQGEASEGNSYRLLIPFLDMCNHDRGSPHVLSGRAVPGGELKVVAGAPVKEGDQVNICYGGGMVGNDRFLQDYGFLDTSSNGVAYDMVAQQLLGKRRIVEGIGSGRFMSESDRARTLDRLGETSLEDDERLLEE-TSDPSLAAAYSYRIGVKKALSR 453
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: A0A7S0EWD6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWD6_9EUKA) HSP 1 Score: 145 bits (367), Expect = 1.460e-37 Identity = 105/282 (37.23%), Postives = 141/282 (50.00%), Query Frame = 1
Query: 184 MRKIAIADFGGLRGVMALEDIKKGQCIIEVPAKSAIDLGDEGT-------------------------------PGSPDLTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAFNGKQVTVEDLKWAVFIVVSRVLTVVRGD--DVRFAKLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSEADAILLAGSLGKRYEAQLRETTAAEDQALLEGGTLSPKEALAVQFRL 930
+ K+A ADF GLRGVMAL D+ KG I+ +P SA++LG + P + DL T DFF+ E+AMLQWPPV E R E + + A + + L+WA F+V+SRVLTV + AKLLIP +DMFNH A H LTGR +L+V+AG V+AG QV+I Y + + YGF+D G S AD L+A A L T+A ED+A L +L ++ LA++FRL
Sbjct: 59 LHKVAPADFDGLRGVMALVDLAKGDEIVSIPGPSAVNLGSQSVDPVQAAVALLEAQARDAVANRRQAYWRLLPPPDAADLCTPDFFSAEEIAMLQWPPVAAEVEGR---AEAMRAALAATPAPAALAEVSSEEGLRQLRWATFLVLSRVLTVQSPELGPGGAAKLLIPFLDMFNHRADCKHYLTGR--TDGNLRVVAGEAVEAGQQVHIVYGTEDTSNAELLSHYGFVDR-GASAADRRLIAAQ--PEAAAALSATSAQEDEAQLGASSLPEQQQLAIRFRL 332
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Match: B8C114_THAPS (SET domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C114_THAPS) HSP 1 Score: 141 bits (356), Expect = 2.340e-35 Identity = 99/241 (41.08%), Postives = 130/241 (53.94%), Query Frame = 1
Query: 328 LTTTDFFTEAELAMLQWPPVVDETRRRIALCEKLYEDVIKMQVQMGSAF--------NGKQV-TVEDLKWAVFIVVSRVLTVVRGDDVRFA-KLLIPGIDMFNHDASSPHVLTGRMAAGASLKVLAGADVKAGTQVNIAYSGGVPRSDRFIQDYGFLDAAGCSE--------ADAILLAGS--LGKRYEAQ----------------LRETTAAEDQALLEGGTLSPK-EALAVQFRLALK 939
L +TDFF+E+ L M+Q P VV+ET R L E YE I+ QM S +G + T+ L+WA +++ SRVLTV + A +LLIP IDM NHD SPH+LTGR G +LKVLAG DVKAG ++I Y GGV +DRFIQDYGFLD G E ADA + +G+R L+ TT ED+ LL + E LA+++R+ +K
Sbjct: 152 LGSTDFFSESALEMMQSPIVVEETLLRRQLVEARYERDIETMAQMSSNLYRWGNEEGSGSSIATLSHLQWATWLITSRVLTVQGSPEETVAHRLLIPLIDMCNHDRDSPHLLTGRAMPGGTLKVLAGTDVKAGDAIDIGYGGGVEGNDRFIQDYGFLDEGGSKERNNSKFNVADAYKIVAKTLVGRRSGGSGMTKLTVADQERALEALKATTLEEDEELLSSEKVEKSDELLALEYRIGMK 392 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350092 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7334 ID=mRNA_7334|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=960bp|location=Sequence derived from alignment at Contig_55:765261..769541+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCAGCCAAGAAGCCTGCAAAGAAGCAAGCTGCAACGAAGATCAGCCTback to top protein sequence of jgi.p|Trimin1|350092 >Trimin1|350092|estExt_Genemark1.C_Ctg_550091 ID=Trimin1|350092|estExt_Genemark1.C_Ctg_550091|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=320bp MAAKKPAKKQAATKISLRGFGGTAAKPSKEAAAAGSAGDGTLIRDASTLAback to top mRNA from alignment at Contig_55:765261..769541+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7334 ID=mRNA_7334|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4281bp|location=Sequence derived from alignment at Contig_55:765261..769541+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_55:765261..769541+ >mRNA_7334 ID=mRNA_7334|Name=jgi.p|Trimin1|350092|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=960bp|location=Sequence derived from alignment at Contig_55:765261..769541+ (Tribonema minus UTEX_B_3156 )back to top |