mRNA_7254 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131714
Unique NamemRNA_7254
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|131714 vs. uniprot
Match: A0A835YQZ4_9STRA (Phorbol-ester/DAG-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQZ4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 7.190e-50
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 VPAQVSYAPTAIAAVATHGHSYQPCLLQLPCRCAACGETAWGALGLSRVCICLTCGVRVHRQCARSAAVPRCAARAEF 234
            VPAQVSYAPTAIAAVATHGHSYQPCLLQLPCRCAACGETAWGALGLSRVCICLTCGVRVHRQCARSAAVPRCAARAEF
Sbjct:    1 VPAQVSYAPTAIAAVATHGHSYQPCLLQLPCRCAACGETAWGALGLSRVCICLTCGVRVHRQCARSAAVPRCAARAEF 78
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131714 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQZ4_9STRA7.190e-50100.00Phorbol-ester/DAG-type domain-containing protein (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_55contigContig_55:149396..149629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131714|gw1.55.11.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase C-like, phorbol ester/diacylglycerol-binding domain
Ec32 orthologEc-01_004820.1
TranscriptId132036
TrackFilteredModels1
ProteinId131714
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131714gene_7254Tribonema minus UTEX_B_3156 geneContig_55 149396..149629 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7254_1exon_7254_1Tribonema minus UTEX_B_3156 exonContig_55 149396..149629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7254CDS_7254Tribonema minus UTEX_B_3156 CDSContig_55 149396..149629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131714Trimin1|131714|gw1.55.11.1Tribonema minus UTEX_B_3156 polypeptideContig_55 149396..149629 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7254 ID=mRNA_7254|Name=jgi.p|Trimin1|131714|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_55:149396..149629+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCCCGCGCAGGTGAGCTACGCGCCCACCGCCATCGCCGCCGTCGCAAC
GCACGGCCACTCGTACCAGCCGTGCCTGCTGCAGCTCCCGTGCCGCTGCG
CTGCGTGCGGCGAGACGGCGTGGGGCGCGCTGGGCCTCTCGCGCGTCTGC
ATCTGCCTCACGTGCGGCGTGCGCGTGCACCGCCAGTGCGCGCGGAGCGC
TGCTGTGCCGCGCTGCGCCGCGCGCGCCGAGTTC
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protein sequence of jgi.p|Trimin1|131714

>Trimin1|131714|gw1.55.11.1 ID=Trimin1|131714|gw1.55.11.1|Name=jgi.p|Trimin1|131714|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=78bp
VPAQVSYAPTAIAAVATHGHSYQPCLLQLPCRCAACGETAWGALGLSRVC
ICLTCGVRVHRQCARSAAVPRCAARAEF
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mRNA from alignment at Contig_55:149396..149629+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7254 ID=mRNA_7254|Name=jgi.p|Trimin1|131714|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=234bp|location=Sequence derived from alignment at Contig_55:149396..149629+ (Tribonema minus UTEX_B_3156 )
GTGCCCGCGCAGGTGAGCTACGCGCCCACCGCCATCGCCGCCGTCGCAAC
GCACGGCCACTCGTACCAGCCGTGCCTGCTGCAGCTCCCGTGCCGCTGCG
CTGCGTGCGGCGAGACGGCGTGGGGCGCGCTGGGCCTCTCGCGCGTCTGC
ATCTGCCTCACGTGCGGCGTGCGCGTGCACCGCCAGTGCGCGCGGAGCGC
TGCTGTGCCGCGCTGCGCCGCGCGCGCCGAGTTC
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Coding sequence (CDS) from alignment at Contig_55:149396..149629+

>mRNA_7254 ID=mRNA_7254|Name=jgi.p|Trimin1|131714|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=234bp|location=Sequence derived from alignment at Contig_55:149396..149629+ (Tribonema minus UTEX_B_3156 )
GTGCCCGCGCAGGTGAGCTACGCGCCCACCGCCATCGCCGCCGTCGCAAC
GCACGGCCACTCGTACCAGCCGTGCCTGCTGCAGCTCCCGTGCCGCTGCG
CTGCGTGCGGCGAGACGGCGTGGGGCGCGCTGGGCCTCTCGCGCGTCTGC
ATCTGCCTCACGTGCGGCGTGCGCGTGCACCGCCAGTGCGCGCGGAGCGC
TGCTGTGCCGCGCTGCGCCGCGCGCGCCGAGTTC
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