mRNA_7212 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162554
Unique NamemRNA_7212
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162554 vs. uniprot
Match: A0A835Z288_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z288_9STRA)

HSP 1 Score: 479 bits (1234), Expect = 3.740e-171
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 1 
Query:    1 MQIASGLALRSHIAPDVPYAQQRSCLLARSATAPPTTACAAYARSERYARMLDVWRSYNYLSAGASRYYALAAHMEEDGDCCGFGAPRGCVPDARAFPAAPTRGQLHWGGDYESDARYVCGAEPGWYGETYYCSQSVDESALEPVVGGCSGCGAEVDAAMARRITGDARAIVALGIVYAAGLAVAVCLAAKRPALDVLPDHVEGVFARRRDLYGASKARAGGPEAVLARLLGKPGEALKR 720
            MQIASGLALRSHIAPDVPYAQQRSCLLARSATAPPTTACAAYARSERYARMLDVWRSYNYLSAGASRYYALAAHMEEDGDCCGFGAPRGCVPDARAFPAAPTRGQLHWGGDYESDARYVCGAEPGWYGETYYCSQSVDESALEPVVGGCSGCGAEVDAAMARRITGDARAIVALGIVYAAGLAVAVCLAAKRPALDVLPDHVEGVFARRRDLYGASKARAGGPEAVLARLLGKPGEALKR
Sbjct:    1 MQIASGLALRSHIAPDVPYAQQRSCLLARSATAPPTTACAAYARSERYARMLDVWRSYNYLSAGASRYYALAAHMEEDGDCCGFGAPRGCVPDARAFPAAPTRGQLHWGGDYESDARYVCGAEPGWYGETYYCSQSVDESALEPVVGGCSGCGAEVDAAMARRITGDARAIVALGIVYAAGLAVAVCLAAKRPALDVLPDHVEGVFARRRDLYGASKARAGGPEAVLARLLGKPGEALKR 240
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BLAST of jgi.p|Trimin1|162554 vs. uniprot
Match: D8LF60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF60_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.890e-28
Identity = 84/238 (35.29%), Postives = 115/238 (48.32%), Query Frame = 1 
Query:    1 MQIASGLALRSHIAPDVPYAQQRSCLLARSATAPPTTACAAYARSERYARMLDVWRSYNYLSAGASRYYALAAHMEEDGDCCGFGAPRGCVPDARAFPAAPTRGQLHWGGDYESDARYVCGAEPGWYGETYYCSQSVDESALEPVVGGCSGCGAEVDAAMARRITGDARAIVALGIVYAAGLAVAVCLAAKRPALDVLPDHVEGVFA----RRRDLYGASKA-------RAGGPEAVL 681
            +Q+  G  + S   P+   + Q  CLL       P   C  Y RS+RYA M+ VWRSY YLS   ++YY     +E+DG CCGFG P  C  DAR FP+  +  Q+ +G    +D RYVCGAE G     Y   Q +D      V+ G  GC  E++  M  ++   A  I+ L  +  A +    C+  KR   D +PDHV+        + +DL G +K        R GGP A L
Sbjct:   12 IQLTLGGTMYSRTLPEYDESFQLDCLLKEPVVNSPDD-CLGYIRSDRYAGMMLVWRSYVYLSLDYTKYYQRLVTIEQDGVCCGFGPPTRCTGDARDFPSYFSENQVGFG----TDRRYVCGAEIGGCKYDYPMGQCMDIDV--DVLEGARGCAFELEMHMTNKVIVHAFFIMGLSALMFASMLSGCCMFWKRAYDDSMPDHVDSHVPWDPFKNKDLLGENKGTKSKRAGREGGPAATL 242
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162554 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z288_9STRA3.740e-171100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LF60_ECTSI1.890e-2835.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:976348..978970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162554|e_gw1.21.171.1
Max annot lvl2759|Eukaryota
EggNOG OGs2CYC1@1|root,2S3GC@2759|Eukaryota
Evalue3.1e-29
Seed ortholog2880.D8LF60
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_001800.1
TranscriptId162876
TrackFilteredModels1
ProteinId162554
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162554gene_7212Tribonema minus UTEX_B_3156 geneContig_21 976348..978970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162554Trimin1|162554|e_gw1.21.171.1Tribonema minus UTEX_B_3156 polypeptideContig_21 976348..978970 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7212_2exon_7212_2Tribonema minus UTEX_B_3156 exonContig_21 976348..976621 -
exon_7212_1exon_7212_1Tribonema minus UTEX_B_3156 exonContig_21 978522..978970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7212CDS_7212Tribonema minus UTEX_B_3156 CDSContig_21 978522..978970 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7212 ID=mRNA_7212|Name=jgi.p|Trimin1|162554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=723bp|location=Sequence derived from alignment at Contig_21:976348..978970- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGATCGCCTCCGGCCTCGCGCTCCGCTCCCACATCGCGCCGGACGT
CCCCTATGCGCAGCAGCGCTCGTGCCTGCTTGCGCGCAGCGCCACCGCGC
CGCCTACCACCGCCTGCGCCGCCTACGCACGCTCCGAGCGCTACGCGCGC
ATGCTCGACGTGTGGCGCTCGTACAACTACCTGAGCGCCGGCGCGTCGCG
CTACTACGCGCTCGCCGCGCACATGGAGGAGGACGGCGACTGCTGCGGCT
TCGGCGCGCCAAGGGGGTGCGTTCCGGATGCGCGCGCGTTTCCCGCGGCG
CCCACGCGCGGCCAGCTGCACTGGGGCGGGGACTATGAGAGCGACGCGCG
GTACGTGTGCGGCGCGGAGCCGGGGTGGTACGGCGAGACGTACTACTGCT
CGCAGAGCGTGGACGAGTCTGCGCTGGAGCCCGTGGTCGGGGGGTGCAGC
GGGTGCGGCGCGGAAGTGGACGCGGCGATGGCGCGCCGCATCACGGGCGA
CGCGCGCGCGATCGTCGCGCTCGGCATCGTCTACGCCGCCGGCCTCGCCG
TTGCGGTGTGCCTCGCCGCCAAGCGCCCCGCGCTCGACGTGCTGCCAGAC
CACGTCGAAGGCGTCTTTGCGCGCCGCCGCGACCTGTACGGCGCCAGTAA
GGCGCGCGCCGGCGGCCCCGAGGCCGTGCTCGCGCGCCTGCTCGGCAAGC
CCGGCGAGGCGCTGAAGAGATGA
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protein sequence of jgi.p|Trimin1|162554

>Trimin1|162554|e_gw1.21.171.1 ID=Trimin1|162554|e_gw1.21.171.1|Name=jgi.p|Trimin1|162554|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=241bp
MQIASGLALRSHIAPDVPYAQQRSCLLARSATAPPTTACAAYARSERYAR
MLDVWRSYNYLSAGASRYYALAAHMEEDGDCCGFGAPRGCVPDARAFPAA
PTRGQLHWGGDYESDARYVCGAEPGWYGETYYCSQSVDESALEPVVGGCS
GCGAEVDAAMARRITGDARAIVALGIVYAAGLAVAVCLAAKRPALDVLPD
HVEGVFARRRDLYGASKARAGGPEAVLARLLGKPGEALKR*
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mRNA from alignment at Contig_21:976348..978970-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7212 ID=mRNA_7212|Name=jgi.p|Trimin1|162554|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2623bp|location=Sequence derived from alignment at Contig_21:976348..978970- (Tribonema minus UTEX_B_3156 )
ATGCAGATCGCCTCCGGCCTCGCGCTCCGCTCCCACATCGCGCCGGACGT
CCCCTATGCGCAGCAGCGCTCGTGCCTGCTTGCGCGCAGCGCCACCGCGC
CGCCTACCACCGCCTGCGCCGCCTACGCACGCTCCGAGCGCTACGCGCGC
ATGCTCGACGTGTGGCGCTCGTACAACTACCTGAGCGCCGGCGCGTCGCG
CTACTACGCGCTCGCCGCGCACATGGAGGAGGACGGCGACTGCTGCGGCT
TCGGCGCGCCAAGGGGGTGCGTTCCGGATGCGCGCGCGTTTCCCGCGGCG
CCCACGCGCGGCCAGCTGCACTGGGGCGGGGACTATGAGAGCGACGCGCG
GTACGTGTGCGGCGCGGAGCCGGGGTGGTACGGCGAGACGTACTACTGCT
CGCAGAGCGTGGACGAGTCTGCGCTGGAGCCCGTGGTCGGGGGGTGCAGG
TGAGAGACGTGGTGTGGTTGGGCTATTGTGACTAGTGGTAAGTGGTTTTG
GGGCTCAGTTCGGGGGATGTGATACTTACATGTGTGTTGAGGAAGTGTGA
TGCCAATGTCAACTCGCCTTCGCCTGATCCCACGAGCACGTAAATGGACT
CCAGCAGGAAAAAAGGTGTGGGTGCATGTCAAATGTTGCTAAGCTGGGCT
ATGCAGGCAGGCACAACGCTACCAGTGCATAGCAGCAGAGGAAGCAGGGG
ACACTGGCCGGTGTGAAAGTAGAGAAGTGATCATTTTGTCAGATGCACCA
AACACATTGCGGAATTACTTCCATCGCGCGCGTGGGGGCATAACCTTCCC
CAGAAAATGACAGAACCTGCCAGAACTTGCAAAGAAGCTTCCAAGCAACT
TGATTTGCAGCAGGCTTCCCAGCGAAAGATCCTGAGCTCTTCCTGAACTA
CCGTTGTTCTTACACAAAACGTGTGCCGATGGGCTTCAACTACGCTACAC
CCCCCTATGTCATGCAGCTGTGATGCAACTAGCACCCATTACTGCAGAGG
CGCACACCTGCAGCACACGGCTTGCCTCACGCGACCGCTGCTGCTGCATC
GCGTTCACCGATGCCGTGTCAGGTTCGACTACCCGCTCGGCGAGTGCAAG
AACCAGCCCGTCATTGACGGCACGTCAAGGTGAGCAACTCTGACGCACGT
CTCAACGTACTTGCGGCTTGCTGTTGCTGACAGGTCTTGAACGACAGCAT
CATGTTCATGCCGTGTGTCAAGTGCACTAGTCATTGTAGGACCTCTGTGA
TGGCTTGTTCGTTCCCGTGAGGCCTTGGCATCTGCCGCATGTGCCGCCCC
CATCTGCTGACTTGAACTGCGTACGCATGAGAAGTAATTGAGACTGGGTG
TCATTGAGACACTTTCAGAATTGTCACACGACATGTAGATTCCGTACAGC
AATCTTCAAGTGATACCATTCATCTGGGCTTTTTCGCGCCCTGATCGATA
ATGAACAAGTACTGAGACCCGAATGCCTACTGACGGTAGAACATGACAAA
GCAGGTCAGCCCCATCTCGTATAATGGCATTGCAGTTTTGAGCGCTTGAT
CAACGTCAGTCCAGGCCATGCATGCGTGGCACATTGCGCCTGTCACTGCC
CAGCAGCATCGGTCACGAATGCAATATCCGGTTGCTCTTGCACTCGGAGG
CGAGCCCCACATCTTTTTGTTAGCAGCCCTCATCTTCAATGTGATGTTCA
GGCTCTCACTGCCACCTTCCCGTGCCCTTCCATCACCATTGTCATTCATG
CCCTACAATGACAGCGAAACCCTCAACAGCAAGTCCCCCCCTTGTCAGCA
CCCCCGAGGTGGATGCAGCGATGGCACGGCGCACTCACCCTAACCCTAAC
CCTAACCCTAGTGCCATAACTGTACATATCTTCGTCTACGCTGGCAGTCT
CGCCATCATGCACAAGCCTGCATCGCACCATCACAAGCACATCGACAACC
CCCATCCTCACTGCACACCAACAGTGCCTGCCCCCGCCCCCTCCCCCCCC
CGCAGCGGGCGCGGCGCACAAGTGGACGCGGCGATGGCGCGCTGCATCAC
GGTGACACGTTCCTCTGCCTACCGCCGCCATTGCCGACACACTCGTTCAT
ACCGTACAATGCCTTTGAAACGCTTACTCCCCCCCCCCCCCCCCCCCTCA
CAGTGGGTGCGGTGCGGAAGTGGACGCGGCGATGGCGCGCCGCATCACCG
GCGACGCGCGCGCGATCGTCGCGCTCGGCTTCGTCTACGCCGCCGGCCTC
ACCACCATGCTCAACTGTGCAGCCCAGCATCACAAGCGTCTTCACAGGCC
CCCGTCCAACGTTGCCTCCCCCCACCCACCCCTGTCCCCCTCCCCGCAGC
GGGTGCGGCGCGGAAGTGGACGCGGCGATGGCGCGCCGCATCACGGGCGA
CGCGCGCGCGATCGTCGCGCTCGGCATCGTCTACGCCGCCGGCCTCGCCG
TTGCGGTGTGCCTCGCCGCCAAGCGCCCCGCGCTCGACGTGCTGCCAGAC
CACGTCGAAGGCGTCTTTGCGCGCCGCCGCGACCTGTACGGCGCCAGTAA
GGCGCGCGCCGGCGGCCCCGAGGCCGTGCTCGCGCGCCTGCTCGGCAAGC
CCGGCGAGGCGCTGAAGAGATGA
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Coding sequence (CDS) from alignment at Contig_21:976348..978970-

>mRNA_7212 ID=mRNA_7212|Name=jgi.p|Trimin1|162554|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=723bp|location=Sequence derived from alignment at Contig_21:976348..978970- (Tribonema minus UTEX_B_3156 )
ATGCAGATCGCCTCCGGCCTCGCGCTCCGCTCCCACATCGCGCCGGACGT
CCCCTATGCGCAGCAGCGCTCGTGCCTGCTTGCGCGCAGCGCCACCGCGC
CGCCTACCACCGCCTGCGCCGCCTACGCACGCTCCGAGCGCTACGCGCGC
ATGCTCGACGTGTGGCGCTCGTACAACTACCTGAGCGCCGGCGCGTCGCG
CTACTACGCGCTCGCCGCGCACATGGAGGAGGACGGCGACTGCTGCGGCT
TCGGCGCGCCAAGGGGGTGCGTTCCGGATGCGCGCGCGTTTCCCGCGGCG
CCCACGCGCGGCCAGCTGCACTGGGGCGGGGACTATGAGAGCGACGCGCG
GTACGTGTGCGGCGCGGAGCCGGGGTGGTACGGCGAGACGTACTACTGCT
CGCAGAGCGTGGACGAGTCTGCGCTGGAGCCCGTGGTCGGGGGGTGCAGC
GGGTGCGGCGCGGAAGTGGACGCGGCGATGGCGCGCCGCATCACGGGCGA
CGCGCGCGCGATCGTCGCGCTCGGCATCGTCTACGCCGCCGGCCTCGCCG
TTGCGGTGTGCCTCGCCGCCAAGCGCCCCGCGCTCGACGTGCTGCCAGAC
CACGTCGAAGGCGTCTTTGCGCGCCGCCGCGACCTGTACGGCGCCAGTAA
GGCGCGCGCCGGCGGCCCCGAGGCCGTGCTCGCGCGCCTGCTCGGCAAGC
CCGGCGAGGCGCTGAAGAGATGA
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