mRNA_7150 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348225
Unique NamemRNA_7150
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348225 vs. uniprot
Match: A0A835Z1A9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A9_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.190e-60
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 MTGGGTAKDVAQEMLLDGVALWKMEPEAVKDLAIDEKGTSVTGAAGLTKGKALAVVMHRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 285
            MTGGGTAKDVAQEMLLDGVALWKMEPEAVKDLAIDEKGTSVTGAAGLTKGKALAVVMHRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA
Sbjct:    1 MTGGGTAKDVAQEMLLDGVALWKMEPEAVKDLAIDEKGTSVTGAAGLTKGKALAVVMHRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 95
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BLAST of jgi.p|Trimin1|348225 vs. uniprot
Match: A0A836CK79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK79_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.120e-44
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:   22 KDVAQEMLLDGVALWKMEPEAVKDLAIDEKGTSVTGAAGLTKGKALAVVMHRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 285
            KD A++M LDGVALWKM+PEAVKDLAIDEKGTSVTG AGLTKGKALAVVM RYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA
Sbjct:  531 KDFARQMQLDGVALWKMKPEAVKDLAIDEKGTSVTGTAGLTKGKALAVVMDRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA 618
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348225 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z1A9_9STRA2.190e-60100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CK79_9STRA2.120e-4492.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:374404..375553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348225|estExt_Genemark1.C_Ctg_210039
Hectar predicted targeting categoryother localisation
TranscriptId348547
TrackFilteredModels1
ProteinId348225
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348225gene_7150Tribonema minus UTEX_B_3156 geneContig_21 374404..375553 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7150_1exon_7150_1Tribonema minus UTEX_B_3156 exonContig_21 374404..374427 +
exon_7150_2exon_7150_2Tribonema minus UTEX_B_3156 exonContig_21 374634..374699 +
exon_7150_3exon_7150_3Tribonema minus UTEX_B_3156 exonContig_21 375266..375553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7150CDS_7150Tribonema minus UTEX_B_3156 CDSContig_21 374404..374427 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7150UTR3_7150Tribonema minus UTEX_B_3156 three_prime_UTRContig_21 375464..375553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348225Trimin1|348225|estExt_Genemark1.C_Ctg_210039Tribonema minus UTEX_B_3156 polypeptideContig_21 374404..375463 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7150 ID=mRNA_7150|Name=jgi.p|Trimin1|348225|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=378bp|location=Sequence derived from alignment at Contig_21:374404..375553+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGGCGGCGGCACGGCAAAGGACGTCGCGCAGGAGATGCTGTTGGA
TGGGGTGGCCCTCTGGAAGATGGAGCCTGAAGCTGTTAAAGACTTGGCCA
TAGATGAGAAGGGCACGTCGGTGACGGGTGCGGCTGGCCTGACCAAGGGC
AAGGCGCTGGCAGTAGTCATGCATCGATACAACACGGGTCAGCAGATCTA
CCAGACAGTGCTGCCCAGCATCCACCCTGCCGGTTATAGGCCTGTGACAC
TCAAAGCTGTTCAGAGGCCGCCTCCGTCTTCCGCTTGAGTTGAGGGCAGC
TGTGGTCCAGCGCACATGTCATCATTGCTGGTACACACAGTGCAAATTTC
GGGAGCTTTTCAAGGTTGCTCACGGGGG
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protein sequence of jgi.p|Trimin1|348225

>Trimin1|348225|estExt_Genemark1.C_Ctg_210039 ID=Trimin1|348225|estExt_Genemark1.C_Ctg_210039|Name=jgi.p|Trimin1|348225|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp
MTGGGTAKDVAQEMLLDGVALWKMEPEAVKDLAIDEKGTSVTGAAGLTKG
KALAVVMHRYNTGQQIYQTVLPSIHPAGYRPVTLKAVQRPPPSSA*
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mRNA from alignment at Contig_21:374404..375553+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7150 ID=mRNA_7150|Name=jgi.p|Trimin1|348225|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1150bp|location=Sequence derived from alignment at Contig_21:374404..375553+ (Tribonema minus UTEX_B_3156 )
ATGACTGGCGGCGGCACGGCAAAGGTGTAGCACAGCACACTGCAGCAACT
GCCGCTCCATGTTCGCCCAGCGAGTCTGGCGCTCCCGTGCATGTTGCAGT
GCCCTCACCTGTCAAAAGAGCAGAGACATATGTAATCATGCATTTAAACA
CAACTGCTCATGGCTTTGTGTTGCTATTATGCCATACCGCTGCAGGTCTG
AAAAGGTGCAAGGCTGGTGACAACGTGCAGGACGTCGCGCAGGAGATGCT
GTTGGATGGGGTGGCCCTCTGGAAGATGGAGCCTGAAGCTGTTAAAGTGA
GTGCAAAACACTTAAGCTCTCAGACCTCTTGATACCACAATGACATCAAG
GAGACACTTCAGTGGACAACTTGTGTCGTTACTTGATCAAGCATGCGTGC
AGCCGTGTTGTACACGCCTGATATCTGGCTTGTCAGTGAGGGACCCATGC
TTGTTCTACAACACCTCGAACAAGCTTTGTGCATGCGGCACCAGCTAGAG
AACGCTTCGTTGAGTGCATTTGTGGCCCAGCCGCGTCACGCAGGGTAATT
GCAGTATATTGATCATCATGTTCATTTTTTTCCGCGTCTTTGTAGTGATC
TGATGTGTTGGCACATCAGTAGTGTAGAGGCAGCCATGCGATGCGAGGGT
CCTTCAATTCGATCCTGATATGCGGTGCAACTTGAGCATGCCCGGGTACT
GCAGTTGTACACTCTGGATCGGTGCCTGTCGCAGCACCTGCGCCTGCGAC
GTGCGGCAAGTGTTGGACTTCAGCAGAGACGTGCTCCACTGCCCCAAGCC
TTATCAAATGCAGCTGCTGCATGCTGATTGTAAGTTCATGTCTGCTGTCG
CTGCTGCCGCAGGACTTGGCCATAGATGAGAAGGGCACGTCGGTGACGGG
TGCGGCTGGCCTGACCAAGGGCAAGGCGCTGGCAGTAGTCATGCATCGAT
ACAACACGGGTCAGCAGATCTACCAGACAGTGCTGCCCAGCATCCACCCT
GCCGGTTATAGGCCTGTGACACTCAAAGCTGTTCAGAGGCCGCCTCCGTC
TTCCGCTTGAGTTGAGGGCAGCTGTGGTCCAGCGCACATGTCATCATTGC
TGGTACACACAGTGCAAATTTCGGGAGCTTTTCAAGGTTGCTCACGGGGG
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Coding sequence (CDS) from alignment at Contig_21:374404..375553+

>mRNA_7150 ID=mRNA_7150|Name=jgi.p|Trimin1|348225|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_21:374404..375553+ (Tribonema minus UTEX_B_3156 )
ATGACTGGCGGCGGCACGGCAAAGGACGTCGCGCAGGAGATGCTGTTGGA
TGGGGTGGCCCTCTGGAAGATGGAGCCTGAAGCTGTTAAAGACTTGGCCA
TAGATGAGAAGGGCACGTCGGTGACGGGTGCGGCTGGCCTGACCAAGGGC
AAGGCGCTGGCAGTAGTCATGCATCGATACAACACGGGTCAGCAGATCTA
CCAGACAGTGCTGCCCAGCATCCACCCTGCCGGTTATAGGCCTGTGACAC
TCAAAGCTGTTCAGAGGCCGCCTCCGTCTTCCGCTTGA
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