mRNA_7149 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162498
Unique NamemRNA_7149
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: A0A836CCQ3_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCQ3_9STRA)

HSP 1 Score: 334 bits (856), Expect = 2.850e-116
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 
Query:    1 MQQVTVSTEHAGQRLVLELTPVGARWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLVDWEVAGRIGDCVFWRGKAEHMPPDVKIGSAWEPWMDLWQLGKVMKEHVYLLPKGSAGRRFMTALLDGAFAAGTEALRSIWQPGQ 471
            MQQVTVSTEHAGQRLVLELTPVGARWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLVDWEVAGRIGDCVFWRGKAEHMPPDVKIGSAWEPWMDLWQLGKVMKEHVYLLPKGSAGRRFMTALLDGAFAAGTEALRSIWQPGQ
Sbjct:    1 MQQVTVSTEHAGQRLVLELTPVGARWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLVDWEVAGRIGDCVFWRGKAEHMPPDVKIGSAWEPWMDLWQLGKVMKEHVYLLPKGSAGRRFMTALLDGAFAAGTEALRSIWQPGQ 157
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: A0A835YH77_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH77_9STRA)

HSP 1 Score: 132 bits (333), Expect = 3.470e-33
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 1 
Query:   10 VTVSTEHAGQRLVLELTPVGARWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLVDWEVAGRIGDCVFWRGKAEHMPPDVKIGSAWEPWMDLWQLGKVMKEHVYLLPKGSAGR-------RFMTALLDGAFAAGTEALRSI 456
            + +  + A Q + L+L PV  RW +     L  +C DVL  L AVH+RGFVHRD+R  NIL   +GY L+DWE+A R+GD VFW  K EH+PP V+  ++W+PWMD+WQLG+V+     L P   AG        R  TA  +  F +   AL+++
Sbjct:  451 IKMDPQPAMQTVRLQLEPVAVRWVVHTAKDLQSMCADVLQALCAVHDRGFVHRDVRQDNILLADTGYVLIDWELAARVGDTVFWDPKPEHVPPTVRRDTSWQPWMDVWQLGRVIHA---LQPSRHAGSARADFVDRLCTANAERRFPSARVALQNV 603
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: A0A8J9RWH1_9CHLO (Probable crinkler effector protein 8 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RWH1_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 2.180e-17
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 1 
Query:   43 LVLELTPVGARWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLVDWEVAGRIGDCVFWRGKAEHMPPDVKIGSAWEPWM---DLWQLGKVMKEHVYLLPKGSAGRRFMTALLDGAFAAGTEALRSIW 459
            +VLEL PVGA + +  E  L  L   +L+ L  +HE G+VHRDIR  NI+ +   + L+DWE+AGR+   V+W G A  +P  V++     P+    DLWQ+GK+M     +  + +  + F   L++G F +  +A   IW
Sbjct:  411 VVLELEPVGACFTITDETELRSLVVSLLSTLCRLHEAGYVHRDIRVDNIVKYFQQWVLIDWELAGRVDQDVWWEGSA--LPEPVRLHQ--RPYTVKTDLWQVGKLMMTQQVVASREA--KLFAQKLVNGDFQSAAQAEGGIW 546
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: A0A6H5K7A9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.160e-7
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1 
Query:  100 LW--QLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLVDW--EVAGRIGDCVF-WRGKAEHMPPDVKIGSAWEPWMDLWQLG 342
            LW  ++CRD+L  L  +HERGF+HRD++ AN+L    G  LVD+   + GR  +C     G    M P+      + P  DLW  G
Sbjct:  282 LWLSRVCRDILEALRYLHERGFIHRDVKPANVLLGPGGARLVDFGSTIDGREDECGGRMHGTVRFMSPERLCARPYWPSSDLWAAG 367
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: A0A7I4DS66_PHYPA (Protein kinase domain-containing protein n=10 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DS66_PHYPA)

HSP 1 Score: 57.0 bits (136), Expect = 1.560e-6
Identity = 41/147 (27.89%), Postives = 69/147 (46.94%), Query Frame = 1 
Query:   34 GQRLVLELTPVGARWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYF-LVDWEVAGRIGDCVFWRGKAEHM----PPDVKIGSAWEPWMDLWQLGKVMKEHVYLLPKGSAGRRFMTALLDGAFAAGTEALRSIW 459
            G    + + P+G    +  E     L + V   L  +HE+GFVHRD+R  NI+  T G F L+D E    + +  F+   + H       D+   S + P  D++QLGK++ +      +  + ++F++ L+     A T AL   W
Sbjct:  409 GDSYKVTIGPLGYSPRIRSEEDTKMLAKSVCNALKVLHEKGFVHRDVRLPNIVEITHGQFMLIDLET---VAESPFFVHPSFHYLTDWSRDMLENSHYTPKSDMYQLGKLLGDKFATFTRSPSAQQFISRLMSKQVDANT-ALEDPW 551
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: D7FS87_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS87_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.110e-6
Identity = 33/93 (35.48%), Postives = 45/93 (48.39%), Query Frame = 1 
Query:   91 EAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLVDW---------EVAGRIGDCVFWRGKAEHMPPDVKIGSAWEPWMDLWQLG 342
            E  L ++CRD+L  L  +HERGF+HRD++ AN+L    G  LVD+         E  GR+       G    M P+      + P  DLW  G
Sbjct:  280 EMWLPRVCRDMLEALRYLHERGFIHRDVKPANVLLGPGGARLVDFGSTIDDREDECGGRM------HGTVRFMSPERLCARPYRPSSDLWAAG 366
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: X6MKQ7_RETFI (Protein kinase domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MKQ7_RETFI)

HSP 1 Score: 54.3 bits (129), Expect = 7.360e-6
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:   91 EAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHT----SGYFLVDWEVAGRI--GDCVFWRGKAEHMPPDVKIGSAWEPWMDLWQLGKVM 351
            E A   + R V++ L  +HERGFVHRD++  NI+Y T    S   ++D+ +AG    G C    G A +  P+V    ++   +D+W LG ++
Sbjct:   23 ETAASHVIRQVVSGLQHLHERGFVHRDLKPDNIMYSTKDEDSPVKVIDFGLAGNTIGGPCTTPCGTAHYAAPEVLENQSYGIEVDIWSLGVII 115
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: A0A6I3BPW1_9ACTN (Non-specific serine/threonine protein kinase n=2 Tax=root TaxID=1 RepID=A0A6I3BPW1_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 1.280e-5
Identity = 40/113 (35.40%), Postives = 56/113 (49.56%), Query Frame = 1 
Query:   43 LVLELTP-------VGARWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILYHTSGYFLV-DWEVAGRIGDCVFWRGKAEHMPPDVKIGSAWEPWMDLWQLGKVMKE 357
            +VLEL P       V  R  L    A+  +  D+   LGA HERG VHRD++  N+L HTSG   V D+ VAG         G  +++ P+   G   +   D++ LG V+ E
Sbjct:   87 IVLELVPGETLKELVRRRGSLLPNEAV-AIALDIAAGLGAAHERGLVHRDVKPHNVLLHTSGVAKVTDFGVAGSGASGGRLFGTCDYLSPEQVRGEELDARADVYALGAVLYE 198
[Close]
BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: UPI00190E5EEF (serine/threonine protein kinase n=1 Tax=Ramlibacter algicola TaxID=2795217 RepID=UPI00190E5EEF)

HSP 1 Score: 53.5 bits (127), Expect = 1.520e-5
Identity = 33/85 (38.82%), Postives = 42/85 (49.41%), Query Frame = 1 
Query:  115 RDVLTILGAVHERGFVHRDIRSANILYHTSGYF-LVDWEVAGRIGDCVF---WRGKAEHMPPDVKIGSAWEPWMDLWQLGKVMKE 357
            R     L  VH RGFVHRD++ AN+L  T G   L D+  A RIG+        G   H  P+   GS   P  D++ LG V+ E
Sbjct:   96 RQAAGALAHVHARGFVHRDVKPANLLVRTDGSLALADFGSAVRIGEGASDATAAGSPRHAAPEQSAGSPASPGADVYALGTVLHE 180
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BLAST of jgi.p|Trimin1|162498 vs. uniprot
Match: A0A150GGY4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GGY4_GONPE)

HSP 1 Score: 53.9 bits (128), Expect = 1.830e-5
Identity = 36/82 (43.90%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:   34 GQRLVLELTPVGA--RWHLEHEAALWQLCRDVLTILGAVHERGFVHRDIRSANILY-------HTSGYFLVDWEVAGRIGDC 252
            G  LVL L PVG   R   E  AAL +  RDVL  L A+H  GFVHRD+R AN+++           + L+D E A R  DC
Sbjct:  425 GTTLVLHLVPVGVPQRGPPEDMAALKRAVRDVLIALAALHAAGFVHRDVRWANVVWVPGATSDAAGSFVLIDLEHAAR-SDC 505
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162498 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A836CCQ3_9STRA2.850e-116100.00Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A835YH77_9STRA3.470e-3342.95Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A8J9RWH1_9CHLO2.180e-1736.62Probable crinkler effector protein 8 n=1 Tax=Cocco... [more]
A0A6H5K7A9_9PHAE9.160e-738.37Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7I4DS66_PHYPA1.560e-627.89Protein kinase domain-containing protein n=10 Tax=... [more]
D7FS87_ECTSI5.110e-635.48Protein kinase domain-containing protein n=1 Tax=E... [more]
X6MKQ7_RETFI7.360e-634.41Protein kinase domain-containing protein n=1 Tax=R... [more]
A0A6I3BPW1_9ACTN1.280e-535.40Non-specific serine/threonine protein kinase n=2 T... [more]
UPI00190E5EEF1.520e-538.82serine/threonine protein kinase n=1 Tax=Ramlibacte... [more]
A0A150GGY4_GONPE1.830e-543.90Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:354264..354737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162498|e_gw1.21.161.1
KEGG TC1.A.13.2.2,1.A.13.2.3
BRITEko00000,ko02000
KEGG koko:K07114
Descriptionserine threonine protein kinase
COG categoryKLT
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0515@1|root,COG0515@2|Bacteria,1FZWQ@1117|Cyanobacteria,1H896@1150|Oscillatoriales
Evalue5.27e-08
Seed ortholog1173027.Mic7113_2405
Hectar predicted targeting categoryother localisation
TranscriptId162820
TrackFilteredModels1
ProteinId162498
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162498gene_7149Tribonema minus UTEX_B_3156 geneContig_21 354264..354737 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7149_1exon_7149_1Tribonema minus UTEX_B_3156 exonContig_21 354264..354737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7149CDS_7149Tribonema minus UTEX_B_3156 CDSContig_21 354264..354737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162498Trimin1|162498|e_gw1.21.161.1Tribonema minus UTEX_B_3156 polypeptideContig_21 354264..354737 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7149 ID=mRNA_7149|Name=jgi.p|Trimin1|162498|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_21:354264..354737- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGGTCACTGTCAGCACTGAGCACGCGGGTCAGCGACTAGTGCT
GGAACTCACGCCGGTCGGCGCCAGGTGGCATCTGGAGCACGAGGCTGCTC
TGTGGCAGCTGTGCCGTGACGTACTCACCATTCTTGGTGCTGTCCATGAG
CGTGGATTCGTGCACAGGGACATCCGCAGTGCGAACATACTGTACCACAC
CAGCGGTTACTTTCTCGTAGACTGGGAGGTGGCCGGACGCATCGGTGACT
GTGTGTTCTGGCGGGGTAAAGCTGAGCATATGCCCCCTGATGTTAAGATT
GGAAGTGCATGGGAGCCGTGGATGGACCTGTGGCAGCTGGGCAAGGTGAT
GAAAGAGCACGTATATTTGCTCCCGAAAGGAAGCGCCGGGCGCCGCTTCA
TGACTGCGCTGCTTGATGGCGCATTTGCTGCTGGTACGGAAGCTCTGCGC
AGCATCTGGCAGCCGGGGCAGTGA
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protein sequence of jgi.p|Trimin1|162498

>Trimin1|162498|e_gw1.21.161.1 ID=Trimin1|162498|e_gw1.21.161.1|Name=jgi.p|Trimin1|162498|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
MQQVTVSTEHAGQRLVLELTPVGARWHLEHEAALWQLCRDVLTILGAVHE
RGFVHRDIRSANILYHTSGYFLVDWEVAGRIGDCVFWRGKAEHMPPDVKI
GSAWEPWMDLWQLGKVMKEHVYLLPKGSAGRRFMTALLDGAFAAGTEALR
SIWQPGQ*
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mRNA from alignment at Contig_21:354264..354737-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7149 ID=mRNA_7149|Name=jgi.p|Trimin1|162498|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_21:354264..354737- (Tribonema minus UTEX_B_3156 )
ATGCAGCAGGTCACTGTCAGCACTGAGCACGCGGGTCAGCGACTAGTGCT
GGAACTCACGCCGGTCGGCGCCAGGTGGCATCTGGAGCACGAGGCTGCTC
TGTGGCAGCTGTGCCGTGACGTACTCACCATTCTTGGTGCTGTCCATGAG
CGTGGATTCGTGCACAGGGACATCCGCAGTGCGAACATACTGTACCACAC
CAGCGGTTACTTTCTCGTAGACTGGGAGGTGGCCGGACGCATCGGTGACT
GTGTGTTCTGGCGGGGTAAAGCTGAGCATATGCCCCCTGATGTTAAGATT
GGAAGTGCATGGGAGCCGTGGATGGACCTGTGGCAGCTGGGCAAGGTGAT
GAAAGAGCACGTATATTTGCTCCCGAAAGGAAGCGCCGGGCGCCGCTTCA
TGACTGCGCTGCTTGATGGCGCATTTGCTGCTGGTACGGAAGCTCTGCGC
AGCATCTGGCAGCCGGGGCAGTGA
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Coding sequence (CDS) from alignment at Contig_21:354264..354737-

>mRNA_7149 ID=mRNA_7149|Name=jgi.p|Trimin1|162498|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_21:354264..354737- (Tribonema minus UTEX_B_3156 )
ATGCAGCAGGTCACTGTCAGCACTGAGCACGCGGGTCAGCGACTAGTGCT
GGAACTCACGCCGGTCGGCGCCAGGTGGCATCTGGAGCACGAGGCTGCTC
TGTGGCAGCTGTGCCGTGACGTACTCACCATTCTTGGTGCTGTCCATGAG
CGTGGATTCGTGCACAGGGACATCCGCAGTGCGAACATACTGTACCACAC
CAGCGGTTACTTTCTCGTAGACTGGGAGGTGGCCGGACGCATCGGTGACT
GTGTGTTCTGGCGGGGTAAAGCTGAGCATATGCCCCCTGATGTTAAGATT
GGAAGTGCATGGGAGCCGTGGATGGACCTGTGGCAGCTGGGCAAGGTGAT
GAAAGAGCACGTATATTTGCTCCCGAAAGGAAGCGCCGGGCGCCGCTTCA
TGACTGCGCTGCTTGATGGCGCATTTGCTGCTGGTACGGAAGCTCTGCGC
AGCATCTGGCAGCCGGGGCAGTGA
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