mRNA_7092 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167925
Unique NamemRNA_7092
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A836CBQ6_9STRA (Ribosomal_S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.680e-30
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYNI 153
            MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYNI
Sbjct:    1 MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYNI 51
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: B7T1V6_VAULI (30S ribosomal protein S10, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1V6_VAULI)

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-18
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    4 SKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            SK+L+EACKKI S+IS   + ENIKGPIPLPTRKRIYCVLRSPHVD
Sbjct:   16 SKILEEACKKIFSIISPIINSENIKGPIPLPTRKRIYCVLRSPHVD 61
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: M1KFS2_DIALT (30S ribosomal protein S10, chloroplastic n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1KFS2_DIALT)

HSP 1 Score: 62.8 bits (151), Expect = 1.610e-11
Identity = 25/45 (55.56%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            +L+++ C KI S+++ T +  N+KGP+PLPTR++IYCVLRSPHV+
Sbjct:   13 RLMNQVCDKICSIVTLTNA--NLKGPVPLPTRRKIYCVLRSPHVN 55
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A516ZAG4_9STRA (30S ribosomal protein S10, chloroplastic n=1 Tax=Pseudopedinella elastica TaxID=35684 RepID=A0A516ZAG4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.770e-11
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            KLLD AC++I++ +  T+S   + GPIPLPT+KR+YCVLRSPHV+
Sbjct:   19 KLLDNACQQIINEVEKTQS--KVVGPIPLPTKKRVYCVLRSPHVN 61
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A516ZA04_9STRA (30S ribosomal protein S10, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA04_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.560e-11
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    7 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            KLLD +CK+I+  I+AT++   + GPIPLPT++RIYCVLRSPHV+
Sbjct:   19 KLLDLSCKQIIESINATQA--KVVGPIPLPTKQRIYCVLRSPHVN 61
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A2I4Q2K6_9PHAE (30S ribosomal protein S10, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2K6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.510e-10
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    7 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            K+L+E+C KI+++IS  E P    GPI LPT KR YCVLRSPHV+
Sbjct:   16 KILNESCNKIINLISQEELPIKFWGPISLPTTKRSYCVLRSPHVN 60
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A1C9C7V5_RHOPU (Ribosomal protein S10 n=1 Tax=Rhodymenia pseudopalmata TaxID=31502 RepID=A0A1C9C7V5_RHOPU)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-10
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    4 SKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            SKLL E+C  I   +S T+    + GP+PLPT++RIYCVLRSPHVD
Sbjct:   16 SKLLAESCNNIRKTVSRTDV--KVVGPVPLPTKRRIYCVLRSPHVD 59
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A4D6X1C1_9FLOR (Ribosomal protein S10 n=1 Tax=Ptilothamnion sphaericum TaxID=1498216 RepID=A0A4D6X1C1_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.040e-10
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 LLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            LL E+C +I+  I  TES   + GPIPLPT+++IYCVLRSPHVD
Sbjct:   19 LLKESCNRIIEAIKRTES--KLIGPIPLPTKRKIYCVLRSPHVD 60
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A1C9CFP4_9FLOR (Ribosomal protein S10 n=1 Tax=Hildenbrandia rivularis TaxID=135206 RepID=A0A1C9CFP4_9FLOR)

HSP 1 Score: 60.1 bits (144), Expect = 2.040e-10
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 KLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            +LL+++C+KI+   + T+S   + GPIPLPT++R+YCVLRSPHVD
Sbjct:   18 QLLNQSCQKIVDTANTTQS--KVIGPIPLPTKRRVYCVLRSPHVD 60
[Close]
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Match: A0A8F0FC51_9PHAE (Ribosomal protein S10 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FC51_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.130e-10
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 LLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVD 141
            +L EACK IL V++  ES + I GP+  PT+KR YCVLRSPHV+
Sbjct:   17 ILKEACKNILDVLANEESIDKIAGPVSFPTKKRSYCVLRSPHVN 60
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167925 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CBQ6_9STRA6.680e-30100.00Ribosomal_S10 domain-containing protein n=1 Tax=Tr... [more]
B7T1V6_VAULI1.100e-1880.4330S ribosomal protein S10, chloroplastic n=1 Tax=V... [more]
M1KFS2_DIALT1.610e-1155.5630S ribosomal protein S10, chloroplastic n=2 Tax=P... [more]
A0A516ZAG4_9STRA1.770e-1160.0030S ribosomal protein S10, chloroplastic n=1 Tax=P... [more]
A0A516ZA04_9STRA3.560e-1162.2230S ribosomal protein S10, chloroplastic n=1 Tax=F... [more]
A0A2I4Q2K6_9PHAE1.510e-1060.0030S ribosomal protein S10, chloroplastic n=1 Tax=D... [more]
A0A1C9C7V5_RHOPU1.990e-1058.70Ribosomal protein S10 n=1 Tax=Rhodymenia pseudopal... [more]
A0A4D6X1C1_9FLOR2.040e-1061.36Ribosomal protein S10 n=1 Tax=Ptilothamnion sphaer... [more]
A0A1C9CFP4_9FLOR2.040e-1055.56Ribosomal protein S10 n=1 Tax=Hildenbrandia rivula... [more]
A0A8F0FC51_9PHAE2.130e-1059.09Ribosomal protein S10 n=1 Tax=Desmarestia aculeata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_54contigContig_54:627240..627395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167925|e_gw1.54.209.1
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
KEGG ModuleM00178,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02946
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred namerpsJ
DescriptionInvolved in the binding of tRNA to the ribosomes
COG categoryJ
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0051@1|root,COG0051@2|Bacteria,1G5TJ@1117|Cyanobacteria
Evalue3.42e-11
Seed ortholog1527444.ucyna2_00322
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId168247
TrackFilteredModels1
ProteinId167925
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167925gene_7092Tribonema minus UTEX_B_3156 geneContig_54 627240..627395 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7092_1exon_7092_1Tribonema minus UTEX_B_3156 exonContig_54 627240..627395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7092CDS_7092Tribonema minus UTEX_B_3156 CDSContig_54 627240..627395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167925Trimin1|167925|e_gw1.54.209.1Tribonema minus UTEX_B_3156 polypeptideContig_54 627240..627395 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7092 ID=mRNA_7092|Name=jgi.p|Trimin1|167925|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_54:627240..627395+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTAAATTATTAGATGAAGCCTGTAAAAAAATACTTTCTGTTATTTC
CGCAACAGAAAGCCCAGAAAACATTAAAGGACCTATTCCTTTGCCAACAC
GGAAAAGGATATATTGTGTATTACGTTCACCGCATGTAGATAACTACAAT
ATCTAA
back to top

protein sequence of jgi.p|Trimin1|167925

>Trimin1|167925|e_gw1.54.209.1 ID=Trimin1|167925|e_gw1.54.209.1|Name=jgi.p|Trimin1|167925|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=52bp
MSKLLDEACKKILSVISATESPENIKGPIPLPTRKRIYCVLRSPHVDNYN
I*
back to top

mRNA from alignment at Contig_54:627240..627395+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7092 ID=mRNA_7092|Name=jgi.p|Trimin1|167925|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_54:627240..627395+ (Tribonema minus UTEX_B_3156 )
ATGAGTAAATTATTAGATGAAGCCTGTAAAAAAATACTTTCTGTTATTTC
CGCAACAGAAAGCCCAGAAAACATTAAAGGACCTATTCCTTTGCCAACAC
GGAAAAGGATATATTGTGTATTACGTTCACCGCATGTAGATAACTACAAT
ATCTAA
back to top

Coding sequence (CDS) from alignment at Contig_54:627240..627395+

>mRNA_7092 ID=mRNA_7092|Name=jgi.p|Trimin1|167925|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=156bp|location=Sequence derived from alignment at Contig_54:627240..627395+ (Tribonema minus UTEX_B_3156 )
ATGAGTAAATTATTAGATGAAGCCTGTAAAAAAATACTTTCTGTTATTTC
CGCAACAGAAAGCCCAGAAAACATTAAAGGACCTATTCCTTTGCCAACAC
GGAAAAGGATATATTGTGTATTACGTTCACCGCATGTAGATAACTACAAT
ATCTAA
back to top